ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__8 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-184N1
alt_ctg8_2_1
zK184N1
CR925863.7
finished
2 CH211-199J6
alt_ctg8_2_1
zC199J6
BX248323.8
finished
3 DKEY-190G11
alt_ctg8_2_1
zK190G11
BX510928.5
finished
  GAP (type-3) length unknown    
5 CH211-222G19
alt_ctg8_2_2
zC222G19
BX296553.6
finished
6 DKEY-11I10
alt_ctg8_2_2
zK11I10
BX004761.10
finished
7 RP71-56H12
alt_ctg8_2_2
bZ56H12
BX511068.5
finished
  GAP (type-3) length unknown    
9 CH211-157C18
alt_ctg8_2_3
zC157C18
BX072561.8
finished
10 DKEY-70P6
alt_ctg8_2_3
zK70P6
AL831748.7
finished
11 CH211-215H12
alt_ctg8_2_3
zC215H12
BX649575.18
finished
  GAP (type-3) length unknown    
13 DKEY-16K6
alt_ctg8_2_4
zK16K6
AL845328.7
finished
14 CH211-267J10
alt_ctg8_2_4
zC267J10
CR847806.15
finished
15 CH211-198G1
alt_ctg8_2_4
zC198G1
BX927185.16
finished
  GAP (type-3) length unknown    
17 CH211-247L22
alt_ctg8_2_5
zC247L22
AL807792.6
finished
18 DKEY-67K20
alt_ctg8_2_5
zK67K20
BX005025.16
finished
19 CH73-222K8
alt_ctg8_2_5
zH222K8
CT956087.6
finished
  GAP (type-3) length unknown    
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
CR376747.28
finished
22 CH73-231O19
alt_ctg8_2_6
CONTAINED
zH231O19
CT956088.5
finished
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
CR376747.28
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 83611 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR925863.7 50778 134388 -
83612 261325 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248323.8 1 177714 -
261326 442426 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX510928.5 16847 197947 +
442427 492426 4 N 50000 contig no
492427 510838 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX296553.6 89804 108215 -
510839 642646 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004761.10 1034 132841 +
642647 725166 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX511068.5 1 82520 -
725167 775166 8 N 50000 contig no
775167 878449 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX072561.8 1 103283 +
878450 1080806 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL831748.7 1 202357 -
1080807 1130640 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX649575.18 1 49834 -
1130641 1180640 12 N 50000 contig no
1180641 1323489 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL845328.7 1 142849 +
1323490 1474943 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR847806.15 2 151455 +
1474944 1493362 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX927185.16 105212 123630 +
1493363 1543362 16 N 50000 contig no
1543363 1662217 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL807792.6 1 118855 +
1662218 1858592 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX005025.16 1 196375 +
1858593 1860340 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CT956087.6 1 1748 -
1860341 1910340 20 N 50000 contig no
1910341 1963749 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR376747.28 99986 153394 -
1963750 1998829 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CT956088.5 1 35080 +
1998830 2056980 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR376747.28 1 58151 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
767,821
Total finished length of fin clones w/ overlap
2,521,392
Total finished length of fin clones w/o overlap
1,753,571
Total overlap length of fin+unfin clones
767,821
Total finished length of fin+unfin clones w/ overlap
2,521,392
Total finished length of fin+unfin clones w/o overlap
1,753,571

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