ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__8 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-184N1
alt_ctg8_2_1
zK184N1
EPN details
CR925863.7
finished
2 CH211-199J6
alt_ctg8_2_1
zC199J6
EPN details
BX248323.8
finished
3 DKEY-190G11
alt_ctg8_2_1
zK190G11
EPN details
BX510928.5
finished
  GAP (type-3) length unknown    
5 CH211-222G19
alt_ctg8_2_2
zC222G19
EPN details
BX296553.6
finished
6 DKEY-11I10
alt_ctg8_2_2
zK11I10
EPN details
BX004761.10
finished
7 RP71-56H12
alt_ctg8_2_2
bZ56H12
EPN details
BX511068.5
finished
  GAP (type-3) length unknown    
9 CH211-157C18
alt_ctg8_2_3
zC157C18
EPN details
BX072561.8
finished
10 DKEY-70P6
alt_ctg8_2_3
zK70P6
EPN details
AL831748.7
finished
11 CH211-215H12
alt_ctg8_2_3
Cl/Pr zC215H12/zC117M24 swap
EPN details
BX649575.18
finished
  GAP (type-3) length unknown    
13 DKEY-16K6
alt_ctg8_2_4
zK16K6
EPN details
AL845328.7
finished
14 CH211-267J10
alt_ctg8_2_4
zC267J10
EPN details
CR847806.15
finished
15 CH211-198G1
alt_ctg8_2_4
zC198G1
EPN details
BX927185.16
finished
  GAP (type-3) length unknown    
17 CH211-247L22
alt_ctg8_2_5
zC247L22
EPN details
AL807792.6
finished
18 DKEY-67K20
alt_ctg8_2_5
zK67K20
EPN details
BX005025.16
finished
19 CH73-222K8
alt_ctg8_2_5
zH222K8
EPN details
CT956087.6
finished
  GAP (type-3) length unknown    
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
EPN details
CR376747.28
finished
22 CH73-231O19
alt_ctg8_2_6
CONTAINED
zH231O19
EPN details
CT956088.5
finished
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
EPN details
CR376747.28
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 83611 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR925863.7 50778 134388 -
83612 261325 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248323.8 1 177714 -
261326 442426 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX510928.5 16847 197947 +
442427 492426 4 N 50000 contig no
492427 510838 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX296553.6 89804 108215 -
510839 642646 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004761.10 1034 132841 +
642647 725166 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX511068.5 1 82520 -
725167 775166 8 N 50000 contig no
775167 878449 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX072561.8 1 103283 +
878450 1080806 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL831748.7 1 202357 -
1080807 1130640 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX649575.18 1 49834 -
1130641 1180640 12 N 50000 contig no
1180641 1323489 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL845328.7 1 142849 +
1323490 1474943 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR847806.15 2 151455 +
1474944 1493362 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX927185.16 105212 123630 +
1493363 1543362 16 N 50000 contig no
1543363 1662217 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL807792.6 1 118855 +
1662218 1858592 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX005025.16 1 196375 +
1858593 1860340 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CT956087.6 1 1748 -
1860341 1910340 20 N 50000 contig no
1910341 1963749 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR376747.28 99986 153394 -
1963750 1998829 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CT956088.5 1 35080 +
1998830 2056980 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR376747.28 1 58151 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-184N1
alt_ctg8_2_1
zK184N1
-
-
CR925863.7
finished
134388 DanioKey 5' / 3'
50778 / 177714
- / -
50777
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-199J6
alt_ctg8_2_1
zC199J6
-
-
BX248323.8
finished
177714 CHORI-211 5' / 5'
1 / 16847
- / -
16846
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-190G11
alt_ctg8_2_1
zK190G11
-
-
BX510928.5
finished
197947 DanioKey        
  GAP (type-3) length unknown                  
5 CH211-222G19
alt_ctg8_2_2
zC222G19
-
-
BX296553.6
finished
108215 CHORI-211 5' / 5'
89804 / 1034
- / -
90836
0
Identified
2017-03-07
agp2oracle
humpub
 
6 DKEY-11I10
alt_ctg8_2_2
zK11I10
-
-
BX004761.10
finished
132841 DanioKey 3' / 3'
132841 / 82520
- / -
25511
0
Identified
2017-03-07
agp2oracle
humpub
 
7 RP71-56H12
alt_ctg8_2_2
bZ56H12
-
-
BX511068.5
finished
108031 RPCI-71        
  GAP (type-3) length unknown                  
9 CH211-157C18
alt_ctg8_2_3
zC157C18
-
-
BX072561.8
finished
179087 CHORI-211 3' / 3'
103283 / 202357
- / -
75804
0
Identified
2017-03-07
agp2oracle
humpub
 
10 DKEY-70P6
alt_ctg8_2_3
zK70P6
-
-
AL831748.7
finished
202357 DanioKey 5' / 3'
1 / 49834
- / -
121659
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-215H12
alt_ctg8_2_3
zC215H12
-
-
BX649575.18
finished
171493 CHORI-211        
  GAP (type-3) length unknown                  
13 DKEY-16K6
alt_ctg8_2_4
zK16K6
-
-
AL845328.7
finished
196248 DanioKey 3' / 5'
142849 / 2
- / -
53400
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-267J10
alt_ctg8_2_4
zC267J10
-
-
CR847806.15
finished
151455 CHORI-211 3' / 5'
151455 / 105212
- / -
105211
0
Identified
2017-03-07
agp2oracle
humpub
 
15 CH211-198G1
alt_ctg8_2_4
zC198G1
-
-
BX927185.16
finished
123630 CHORI-211        
  GAP (type-3) length unknown                  
17 CH211-247L22
alt_ctg8_2_5
zC247L22
-
-
AL807792.6
finished
160553 CHORI-211 3' / 5'
118855 / 1
- / -
41698
0
Identified
2017-03-07
agp2oracle
humpub
 
18 DKEY-67K20
alt_ctg8_2_5
zK67K20
-
-
BX005025.16
finished
196375 DanioKey 3' / 3'
196375 / 1748
- / -
90836
0
Identified
2017-03-07
agp2oracle
humpub
 
19 CH73-222K8
alt_ctg8_2_5
zH222K8
-
-
CT956087.6
finished
92584 CHORI-73        
  GAP (type-3) length unknown                  
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
-
-
CR376747.28
finished
153394 CHORI-211 5' / 5'
99986 / 1
- / -
35080
0
Identified
2017-03-31
agp2oracle
humpub
 
22 CH73-231O19
alt_ctg8_2_6
CONTAINED
zH231O19
-
-
CT956088.5
finished
35080 CHORI-73 3' / 3'
35080 / 58151
- / -
35080
0
Identified
2017-03-31
agp2oracle
humpub
 
21 CH211-248D20
alt_ctg8_2_6
CONTAINER
zC248D20
-
-
CR376747.28
finished
153394 CHORI-211        

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
767,821
Total finished length of fin clones w/ overlap
2,521,392
Total finished length of fin clones w/o overlap
1,753,571
Total overlap length of fin+unfin clones
767,821
Total finished length of fin+unfin clones w/ overlap
2,521,392
Total finished length of fin+unfin clones w/o overlap
1,753,571

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