ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__25 (TPF updated: 2017-11-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-51L3
alt_ctg25_2_1
zC51L3
AL929309.6
finished
2 DKEY-17G17
alt_ctg25_2_1
zK17G17
CR383674.8
finished
3 CH211-169K21
alt_ctg25_2_1
zC169K21
CR388067.9
finished
  GAP (type-3) length unknown    
5 CH73-189J12
alt_ctg25_2_2
zH189J12
CU929454.9
finished
6 DKEY-65P15
alt_ctg25_2_2
zK65P15
BX004889.8
finished
7 DKEY-208B15
alt_ctg25_2_2
zK208B15
CR759963.12
finished
  GAP (type-3) length unknown    
9 CH211-12K12
alt_ctg25_2_3
zC12K12
CU457815.12
finished
10 DKEY-24J21
alt_ctg25_2_3
zK24J21
BX005464.7
finished
11 CH211-142M8
alt_ctg25_2_3
zC142M8
AL929183.14
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 153251 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL929309.6 1 153251 +
153252 365337 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR383674.8 1 212086 +
365338 477156 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388067.9 1 111819 -
477157 527156 4 N 50000 contig no
527157 559175 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU929454.9 14787 46805 -
559176 812597 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004889.8 1 253422 +
812598 871491 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR759963.12 9601 68494 +
871492 921491 8 N 50000 contig no
921492 979265 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU457815.12 1 57774 +
979266 1178904 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX005464.7 1 199639 +
1178905 1278301 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL929183.14 1 99397 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
276,191
Total finished length of fin clones w/ overlap
1,454,492
Total finished length of fin clones w/o overlap
1,178,301
Total overlap length of fin+unfin clones
276,191
Total finished length of fin+unfin clones w/ overlap
1,454,492
Total finished length of fin+unfin clones w/o overlap
1,178,301

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