ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__18 (TPF updated: 2017-09-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEYP-1H4
alt_ctg18_2_1
zKp1H4
CR318588.10
finished
2 DKEYP-86F2
alt_ctg18_2_1
zKp86F2
BX640480.22
finished
3 CH73-141F8
alt_ctg18_2_1
zH141F8
LO018377.1
contiguous
  GAP (type-3) length unknown    
5 DKEY-95H12
alt_ctg18_2_2
CONTAINER
zK95H12
BX927293.16
finished
6 CH211-184L6
alt_ctg18_2_2
CONTAINED
zC184L6
BX119988.9
finished
5 DKEY-95H12
alt_ctg18_2_2
CONTAINER
zK95H12
BX927293.16
finished
  GAP (type-3) length unknown    
8 CH211-141E22
alt_ctg18_2_3
zC141E22
BX005474.6
finished
9 CH211-91P22
alt_ctg18_2_3
zC91P22
BX470181.7
finished
10 DKEY-239K7
alt_ctg18_2_3
zK239K7
BX470100.6
finished
11 DKEY-16J24
alt_ctg18_2_3
CONTAINER
zK16J24
BX247877.13
finished
12 CH211-11F20
alt_ctg18_2_3
CONTAINED
zC11F20
BX936328.7
finished
11 DKEY-16J24
alt_ctg18_2_3
CONTAINER
zK16J24
BX247877.13
finished
  GAP (type-3) length unknown    
14 CH211-245J22
alt_ctg18_2_4
zC245J22
BX928740.16
finished
15 DKEY-68I6
alt_ctg18_2_4
zK68I6
BX005289.15
finished
16 CH211-219A15
alt_ctg18_2_4
zC219A15
CR753897.9
finished
  GAP (type-3) length unknown    
18 CH211-154H20
alt_ctg18_2_5
zC154H20
BX649507.3
finished
19 DKEY-66C4
alt_ctg18_2_5
zK66C4
BX000347.7
finished
20 CH73-166M15
alt_ctg18_2_5
zH166M15
CT027613.6
finished
  GAP (type-3) length unknown    
22 DKEY-8L13
alt_ctg18_2_6
zK8L13
BX005395.9
finished
23 CH211-196M2
alt_ctg18_2_6
zC196M2
BX323598.9
finished
24 CH211-218C6
alt_ctg18_2_6
zC218C6
BX950194.9
finished
  GAP (type-3) length unknown    
26 DKEY-9I9
alt_ctg18_2_7
zK9I9
BX890624.9
finished
27 DKEY-244F16
alt_ctg18_2_7
zK244F16
BX544871.4
finished
28 CH211-127F10
alt_ctg18_2_7
zC127F10
BX324138.6
finished
  GAP (type-3) length unknown    
30 DKEY-25F3
alt_ctg18_2_8
CONTAINER
zK25F3
BX470160.9
finished
31 DKEY-16F19
alt_ctg18_2_8
CONTAINED
zK16F19
BX088714.18
finished
30 DKEY-25F3
alt_ctg18_2_8
CONTAINER
zK25F3
BX470160.9
finished
  GAP (type-3) length unknown    
33 CH211-201B11
alt_ctg18_2_9
zC201B11
BX548157.5
finished
34 CH211-265B3
alt_ctg18_2_9
zC265B3
BX927199.5
finished
35 DKEY-16N13
alt_ctg18_2_9
zK16N13
BX927240.11
finished
36 CH73-186J5
alt_ctg18_2_9
zH186J5
CT573204.5
finished
  GAP (type-3) length unknown    
38 CH211-69M14
alt_ctg18_2_10
zC69M14
AL929030.7
finished
39 DKEY-25K11
alt_ctg18_2_10
zK25K11
CT967325.1
finished
40 DKEY-24L11
alt_ctg18_2_10
zK24L11
BX470164.10
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 108008 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR318588.10 1 108008 +
108009 294266 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 BX640480.22 1 186258 -
294267 360367 3 A LO018377.1 29388 95488 +
360368 410367 4 N 50000 contig no
410368 414681 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX927293.16 145886 150199 -
414682 556611 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX119988.9 1 141930 +
556612 572825 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX927293.16 1 16214 -
572826 622825 8 N 50000 contig no
622826 651066 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX005474.6 77855 106095 -
651067 837150 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX470181.7 1 186084 +
837151 952454 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX470100.6 2001 117304 +
952455 954451 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX247877.13 162795 164791 -
954452 1066267 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX936328.7 1223 113038 -
1066268 1120474 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 BX247877.13 1 54207 -
1120475 1170474 15 N 50000 contig no
1170475 1322607 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX928740.16 2001 154133 -
1322608 1449968 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX005289.15 28545 155905 -
1449969 1556607 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CR753897.9 17751 124389 +
1556608 1606607 19 N 50000 contig no
1606608 1628272 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 BX649507.3 144521 166185 -
1628273 1783478 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 BX000347.7 1 155206 -
1783479 1797069 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 CT027613.6 1 13591 -
1797070 1847069 23 N 50000 contig no
1847070 1939837 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 BX005395.9 78248 171015 -
1939838 2137166 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 BX323598.9 1 197329 +
2137167 2159515 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 BX950194.9 1 22349 -
2159516 2209515 27 N 50000 contig no
2209516 2316122 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX890624.9 45497 152103 -
2316123 2519558 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX544871.4 1 203436 -
2519559 2586475 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX324138.6 106253 173169 +
2586476 2636475 31 N 50000 contig no
2636476 2649118 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX470160.9 194859 207501 -
2649119 2797726 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX088714.18 18541 167148 +
2797727 2845563 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX470160.9 1 47837 -
2845564 2895563 35 N 50000 contig no
2895564 3028346 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 BX548157.5 62839 195621 -
3028347 3113327 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 BX927199.5 1 84981 -
3113328 3354505 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 BX927240.11 1791 242968 -
3354506 3424107 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 CT573204.5 1 69602 -
3424108 3474107 40 N 50000 contig no
3474108 3580120 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 AL929030.7 1 106013 +
3580121 3847127 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 CT967325.1 820 267826 +
3847128 4059360 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX470164.10 1 212233 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
9
Gap types
type-3
9
Total clones
31
Clone HTGS Phases
contiguous
1
finished
30
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,399,825
Total finished length of fin clones w/ overlap
4,891,682
Total finished length of fin clones w/o overlap
3,491,857
Total overlap length of fin+unfin clones
1,429,212
Total finished length of fin+unfin clones w/ overlap
4,987,170
Total finished length of fin+unfin clones w/o overlap
3,557,958

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