ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__22 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-192M14
alt_ctg22_2_1
zK192M14
EPN details
BX908392.13
finished
2 CH211-270E10
alt_ctg22_2_1
zC270E10
EPN details
BX649373.4
finished
3 CH211-190N7
alt_ctg22_2_1
zC190N7
EPN details
BX908733.16
finished
  GAP (type-3) length unknown    
5 DKEY-21E2
alt_ctg22_2_2
CONTAINER
zK21E2
EPN details
BX927243.9
finished
6 CH211-184B9
alt_ctg22_2_2
CONTAINED
zC184B9
EPN details
BX072569.6
finished
5 DKEY-21E2
alt_ctg22_2_2
CONTAINER
zK21E2
EPN details
BX927243.9
finished
  GAP (type-3) length unknown    
8 CH211-130L20
alt_ctg22_2_3
zC130L20
EPN details
CR318670.8
finished
9 DKEY-164M7
alt_ctg22_2_3
zK164M7
EPN details
BX005388.20
finished
10 DKEY-53B10
alt_ctg22_2_3
zK53B10
EPN details
BX936311.13
finished
11 DKEY-193B19
alt_ctg22_2_3
zK193B19
EPN details
BX936370.5
finished
12 CH211-87N12
alt_ctg22_2_3
zC87N12
EPN details
BX784032.4
finished
  GAP (type-3) length unknown    
14 DKEY-4C23
alt_ctg22_2_4
zK4C23
EPN details
AL929032.10
finished
15 DKEY-179J5
alt_ctg22_2_4
zK179J5
EPN details
CR932977.11
finished
16 CH211-154A22
alt_ctg22_2_4
zC154A22
EPN details
BX548076.6
finished
  GAP (type-3) length unknown    
18 CH211-213C4
alt_ctg22_2_5
CONTAINER
zC213C4
EPN details
BX649245.16
finished
19 CH73-31I8
alt_ctg22_2_5
CONTAINED
zH31I8
EPN details
CT009669.5
finished
18 CH211-213C4
alt_ctg22_2_5
CONTAINER
zC213C4
EPN details
BX649245.16
finished
  GAP (type-3) length unknown    
21 CH211-270P4
alt_ctg22_2_6
zC270P4
EPN details
BX957348.32
finished
22 CH211-182N24
alt_ctg22_2_6
zC182N24
EPN details
BX005078.32
finished
  GAP (type-3) length unknown    
24 DKEYP-92A5
alt_ctg22_2_7
zKp92A5
EPN details
BX649256.12
finished
25 CH211-159C12
alt_ctg22_2_7
zC159C12
EPN details
BX005362.6
finished
26 CH211-223C9
alt_ctg22_2_7
zC223C9
EPN details
BX649294.7
finished
  GAP (type-3) length unknown    
28 CH211-257F16
alt_ctg22_2_8
zC257F16
EPN details
BX537350.25
finished
29 CH211-195G6
alt_ctg22_2_8
CONTAINER
zC195G6
EPN details
CR392343.30
finished
30 DKEY-180K24
alt_ctg22_2_8
CONTAINED
zK180K24
EPN details
BX927070.10
finished
29 CH211-195G6
alt_ctg22_2_8
CONTAINER
zC195G6
EPN details
CR392343.30
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 177577 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX908392.13 2001 179577 -
177578 227517 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX649373.4 1 49940 -
227518 304486 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX908733.16 57187 134155 +
304487 354486 4 N 50000 contig no
354487 581349 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX927243.9 1 226863 +
581350 581471 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX072569.6 82870 82991 +
581472 581490 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX927243.9 226985 227003 +
581491 631490 8 N 50000 contig no
631491 643463 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CR318670.8 1 11973 +
643464 863296 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX005388.20 1 219833 -
863297 1054046 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX936311.13 2001 192750 +
1054047 1149908 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX936370.5 1 95862 -
1149909 1201708 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX784032.4 60254 112053 +
1201709 1251708 14 N 50000 contig no
1251709 1395967 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL929032.10 1 144259 +
1395968 1493331 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR932977.11 1 97364 -
1493332 1666492 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 BX548076.6 2001 175161 +
1666493 1716492 18 N 50000 contig no
1716493 1803180 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX649245.16 1 86688 +
1803181 1894204 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CT009669.5 1 91024 -
1894205 1916164 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX649245.16 179132 201091 +
1916165 1966164 22 N 50000 contig no
1966165 2007305 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 BX957348.32 106916 148056 -
2007306 2141709 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 BX005078.32 1 134404 -
2141710 2191709 25 N 50000 contig no
2191710 2318155 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX649256.12 1 126446 +
2318156 2496306 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX005362.6 1 178151 -
2496307 2653120 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX649294.7 52410 209223 +
2653121 2703120 29 N 50000 contig no
2703121 2889613 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 BX537350.25 1 186493 -
2889614 2889614 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR392343.30 2001 2001 +
2889615 2957514 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 BX927070.10 4071 71970 -
2957515 2986878 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR392343.30 60884 90247 +

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-192M14
alt_ctg22_2_1
zK192M14
-
-
BX908392.13
finished
179577 DanioKey 5' / 3'
2001 / 49940
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-270E10
alt_ctg22_2_1
zC270E10
-
-
BX649373.4
finished
49940 CHORI-211 5' / 5'
1 / 57187
- / -
57186
0
Identified
2017-03-11
agp2oracle
humpub
 
3 CH211-190N7
alt_ctg22_2_1
zC190N7
-
-
BX908733.16
finished
134155 CHORI-211        
  GAP (type-3) length unknown                  
5 DKEY-21E2
alt_ctg22_2_2
CONTAINER
zK21E2
-
-
BX927243.9
finished
227003 DanioKey 3' / 5'
226863 / 82870
- / -
144729
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-184B9
alt_ctg22_2_2
CONTAINED
zC184B9
-
-
BX072569.6
finished
144729 CHORI-211 3' / 5'
82991 / 226985
- / -
144729
0
Identified
2017-03-07
agp2oracle
humpub
 
5 DKEY-21E2
alt_ctg22_2_2
CONTAINER
zK21E2
-
-
BX927243.9
finished
227003 DanioKey        
  GAP (type-3) length unknown                  
8 CH211-130L20
alt_ctg22_2_3
zC130L20
-
-
CR318670.8
finished
22152 CHORI-211 3' / 3'
11973 / 219833
- / -
11086
0
Identified
2017-03-07
agp2oracle
humpub
 
9 DKEY-164M7
alt_ctg22_2_3
zK164M7
-
-
BX005388.20
finished
220740 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
10 DKEY-53B10
alt_ctg22_2_3
zK53B10
-
-
BX936311.13
finished
192750 DanioKey 3' / 3'
192750 / 95862
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-193B19
alt_ctg22_2_3
zK193B19
-
-
BX936370.5
finished
97862 DanioKey 5' / 5'
1 / 60254
- / -
60253
0
Identified
2017-03-07
agp2oracle
humpub
 
12 CH211-87N12
alt_ctg22_2_3
zC87N12
-
-
BX784032.4
finished
112053 CHORI-211        
  GAP (type-3) length unknown                  
14 DKEY-4C23
alt_ctg22_2_4
zK4C23
-
-
AL929032.10
finished
236775 DanioKey 3' / 3'
144259 / 97364
- / -
94019
0
Identified
2017-03-30
agp2oracle
humpub
 
15 DKEY-179J5
alt_ctg22_2_4
zK179J5
-
-
CR932977.11
finished
98867 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2006-08-03
find_overl...
badger
 
16 CH211-154A22
alt_ctg22_2_4
zC154A22
-
-
BX548076.6
finished
175161 CHORI-211        
  GAP (type-3) length unknown                  
18 CH211-213C4
alt_ctg22_2_5
CONTAINER
zC213C4
-
-
BX649245.16
finished
201091 CHORI-211 3' / 3'
86688 / 91024
- / -
91024
0
Identified
2017-03-07
agp2oracle
humpub
 
19 CH73-31I8
alt_ctg22_2_5
CONTAINED
zH31I8
-
-
CT009669.5
finished
91024 CHORI-73 5' / 5'
1 / 179132
- / -
91024
0
Identified
2017-03-07
agp2oracle
humpub
 
18 CH211-213C4
alt_ctg22_2_5
CONTAINER
zC213C4
-
-
BX649245.16
finished
201091 CHORI-211        
  GAP (type-3) length unknown                  
21 CH211-270P4
alt_ctg22_2_6
zC270P4
-
-
BX957348.32
finished
148056 CHORI-211 5' / 3'
106916 / 134404
- / -
107799
0
Identified
2017-03-07
agp2oracle
humpub
 
22 CH211-182N24
alt_ctg22_2_6
zC182N24
-
-
BX005078.32
finished
135288 CHORI-211        
  GAP (type-3) length unknown                  
24 DKEYP-92A5
alt_ctg22_2_7
zKp92A5
-
-
BX649256.12
finished
128446 DanioKeypilot 3' / 3'
126446 / 178151
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
25 CH211-159C12
alt_ctg22_2_7
zC159C12
-
-
BX005362.6
finished
178151 CHORI-211 5' / 5'
1 / 52410
- / -
52409
0
Identified
2017-03-07
agp2oracle
humpub
 
26 CH211-223C9
alt_ctg22_2_7
zC223C9
-
-
BX649294.7
finished
209223 CHORI-211        
  GAP (type-3) length unknown                  
28 CH211-257F16
alt_ctg22_2_8
zC257F16
-
-
BX537350.25
finished
186493 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2017-09-19
agp2oracle
humpub
 
29 CH211-195G6
alt_ctg22_2_8
CONTAINER
zC195G6
-
-
CR392343.30
finished
90247 CHORI-211 3' / 3'
2001 / 71970
- / -
71970
0
Identified
2017-03-07
agp2oracle
humpub
 
30 DKEY-180K24
alt_ctg22_2_8
CONTAINED
zK180K24
-
-
BX927070.10
finished
71970 DanioKey 5' / 5'
4071 / 60884
- / -
71970
0
Identified
2017-03-07
agp2oracle
humpub
 
29 CH211-195G6
alt_ctg22_2_8
CONTAINER
zC195G6
-
-
CR392343.30
finished
90247 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
23
Clone HTGS Phases
finished
23
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
681,870
Total finished length of fin clones w/ overlap
3,331,753
Total finished length of fin clones w/o overlap
2,649,883
Total overlap length of fin+unfin clones
681,870
Total finished length of fin+unfin clones w/ overlap
3,331,753
Total finished length of fin+unfin clones w/o overlap
2,649,883

Dovetails

Help

# rank accession status length date
1 2 BX649373 unfinished 9 Tue, 19 Sep 2017 10:25

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