ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__7 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-172H23
alt_ctg7_2_1
CONTAINER
zK172H23
CU280645.6
finished
2 CH211-189B21
alt_ctg7_2_1
CONTAINED
zC189B21
BX005095.6
finished
1 DKEY-172H23
alt_ctg7_2_1
CONTAINER
zK172H23
CU280645.6
finished
  GAP (type-3) length unknown    
4 DKEY-11F12
alt_ctg7_2_2
zK11F12
BX005323.10
finished
5 DKEY-126D11
alt_ctg7_2_2
zK126D11
BX470146.8
finished
6 DKEY-165A24
alt_ctg7_2_2
zK165A24
BX470211.11
finished
  GAP (type-3) length unknown    
8 CH211-151K15
alt_ctg7_2_3
zC151K15
CR352332.11
finished
9 CH211-194E11
alt_ctg7_2_3
zC194E11
BX296521.18
finished
10 DKEY-24G18
alt_ctg7_2_3
zK24G18
CR318658.11
finished
  GAP (type-3) length unknown    
12 CH211-112G6
alt_ctg7_2_4
zC112G6
CR450827.5
finished
13 DKEY-34K23
alt_ctg7_2_4
zK34K23
CR352335.10
finished
14 DKEY-182O15
alt_ctg7_2_4
zK182O15
BX927082.9
finished
  GAP (type-3) length unknown    
16 DKEY-287H22
alt_ctg7_2_5
CONTAINER
zK287H22
BX663616.13
finished
17 CH211-231L18
alt_ctg7_2_5
CONTAINED
zC231L18
AL732635.7
finished
16 DKEY-287H22
alt_ctg7_2_5
CONTAINER
zK287H22
BX663616.13
finished
  GAP (type-3) length unknown    
19 DKEY-286H2
alt_ctg7_2_6
zK286H2
CT737190.13
finished
20 CH211-137K20
alt_ctg7_2_6
zC137K20
CU138529.9
finished
21 CH211-160M3
alt_ctg7_2_6
zC160M3
BX324153.4
finished
  GAP (type-3) length unknown    
23 CH211-149K24
alt_ctg7_2_7
zC149K24
CR759742.10
finished
24 CH211-202D15
alt_ctg7_2_7
zC202D15
CR847959.16
finished
25 CH211-245P24
alt_ctg7_2_7
zC245P24
AL954648.7
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 14593 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU280645.6 1 14593 +
14594 152936 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX005095.6 1 138343 -
152937 152980 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU280645.6 154202 154245 +
152981 202980 4 N 50000 contig no
202981 380363 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX005323.10 1 177383 +
380364 548917 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX470146.8 1 168554 -
548918 663026 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX470211.11 26408 140516 +
663027 713026 8 N 50000 contig no
713027 789847 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR352332.11 102367 179187 -
789848 975664 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX296521.18 1 185817 +
975665 1062523 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR318658.11 96429 183287 +
1062524 1112523 12 N 50000 contig no
1112524 1162823 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR450827.5 1 50300 +
1162824 1308134 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR352335.10 1 145311 +
1308135 1406195 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX927082.9 59080 157140 +
1406196 1456195 16 N 50000 contig no
1456196 1492573 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX663616.13 1 36378 +
1492574 1568131 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL732635.7 1 75558 -
1568132 1607816 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX663616.13 110326 150010 +
1607817 1657816 20 N 50000 contig no
1657817 1704679 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CT737190.13 72498 119360 -
1704680 1853517 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CU138529.9 1 148838 +
1853518 1929945 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX324153.4 19443 95870 +
1929946 1979945 24 N 50000 contig no
1979946 2061575 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR759742.10 49165 130794 -
2061576 2268145 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR847959.16 1 206570 -
2268146 2425662 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL954648.7 1 157517 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
19
Clone HTGS Phases
finished
19
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
892,983
Total finished length of fin clones w/ overlap
2,978,916
Total finished length of fin clones w/o overlap
2,085,933
Total overlap length of fin+unfin clones
892,983
Total finished length of fin+unfin clones w/ overlap
2,978,916
Total finished length of fin+unfin clones w/o overlap
2,085,933

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