ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__24 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-11P5
alt_ctg24_2_1
zK11P5
EPN details
CU041413.4
finished
2 CH211-284C3
alt_ctg24_2_1
zC284C3
EPN details
BX005418.11
finished
3 CH211-171B20
alt_ctg24_2_1
zC171B20
EPN details
CR318587.6
finished
  GAP (type-3) length unknown    
5 DKEY-106N13
alt_ctg24_2_2
zK106N13
EPN details
CT573489.5
finished
6 CH211-220I12
alt_ctg24_2_2
zC220I12
EPN details
BX276112.19
finished
7 DKEY-40H20
alt_ctg24_2_2
zK40H20
EPN details
BX005378.13
finished
  GAP (type-3) length unknown    
9 CH211-80N22
alt_ctg24_2_3
zC80N22
EPN details
CT574587.12
finished
10 CH211-250A24
alt_ctg24_2_3
zC250A24
EPN details
AL929225.6
finished
  GAP (type-3) length unknown    
12 DKEY-25O1
alt_ctg24_2_4
CONTAINER
zK25O1
EPN details
CR383669.17
finished
13 DKEY-178I20
alt_ctg24_2_4
CONTAINED
zK178I20
EPN details
CU302293.12
finished
12 DKEY-25O1
alt_ctg24_2_4
CONTAINER
zK25O1
EPN details
CR383669.17
finished
  GAP (type-3) length unknown    
15 DKEYP-25A6
alt_ctg24_2_5
zKp25A6
EPN details
BX323068.15
finished
16 DKEY-175H17
alt_ctg24_2_5
zK175H17
EPN details
CR548632.13
finished
17 CH211-189O17
alt_ctg24_2_5
zC189O17
EPN details
BX682238.10
finished
  GAP (type-3) length unknown    
19 CH211-262K18
alt_ctg24_2_6
zC262K18
EPN details
BX322565.11
finished
20 DKEY-240N24
alt_ctg24_2_6
zK240N24
EPN details
CU041404.15
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 73916 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU041413.4 1 73916 +
73917 221616 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX005418.11 1 147700 +
221617 238927 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR318587.6 1 17311 -
238928 288927 4 N 50000 contig no
288928 301636 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CT573489.5 1 12709 +
301637 435125 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX276112.19 1 133489 -
435126 504583 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX005378.13 98558 168015 +
504584 554583 8 N 50000 contig no
554584 566530 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 CT574587.12 1 11947 +
566531 717199 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AL929225.6 399 151067 +
717200 767199 11 N 50000 contig no
767200 771431 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 CR383669.17 181021 185252 -
771432 845096 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 CU302293.12 105480 179144 -
845097 956105 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 CR383669.17 1 111009 -
956106 1006105 15 N 50000 contig no
1006106 1128051 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX323068.15 1 121946 +
1128052 1306155 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CR548632.13 290 178393 +
1306156 1313849 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX682238.10 1 7694 -
1313850 1363849 19 N 50000 contig no
1363850 1522830 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 BX322565.11 1 158981 -
1522831 1536400 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 CU041404.15 1 13570 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-11P5
alt_ctg24_2_1
zK11P5
-
-
CU041413.4
finished
80804 DanioKey 3' / 5'
73916 / 1
- / -
6888
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-284C3
alt_ctg24_2_1
zC284C3
-
-
BX005418.11
finished
156060 CHORI-211 3' / 3'
147700 / 17311
- / -
155380
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-171B20
alt_ctg24_2_1
zC171B20
-
-
CR318587.6
finished
164331 CHORI-211        
  GAP (type-3) length unknown                  
5 DKEY-106N13
alt_ctg24_2_2
zK106N13
-
-
CT573489.5
finished
23226 DanioKey 3' / 3'
12709 / 133489
- / -
23093
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-220I12
alt_ctg24_2_2
zC220I12
-
-
BX276112.19
finished
146065 CHORI-211 5' / 5'
1 / 98558
- / -
98557
0
Identified
2017-03-07
agp2oracle
humpub
 
7 DKEY-40H20
alt_ctg24_2_2
zK40H20
-
-
BX005378.13
finished
168015 DanioKey        
  GAP (type-3) length unknown                  
9 CH211-80N22
alt_ctg24_2_3
zC80N22
-
-
CT574587.12
finished
160942 CHORI-211 3' / 5'
11947 / 399
- / -
149393
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-250A24
alt_ctg24_2_3
zC250A24
-
-
AL929225.6
finished
151067 CHORI-211        
  GAP (type-3) length unknown                  
12 DKEY-25O1
alt_ctg24_2_4
CONTAINER
zK25O1
-
-
CR383669.17
finished
185252 DanioKey 5' / 3'
181021 / 179144
- / -
179144
0
Identified
2017-03-31
agp2oracle
humpub
 
13 DKEY-178I20
alt_ctg24_2_4
CONTAINED
zK178I20
-
-
CU302293.12
finished
179144 DanioKey 5' / 3'
105480 / 111009
- / -
179144
0
Identified
2017-03-31
agp2oracle
humpub
 
12 DKEY-25O1
alt_ctg24_2_4
CONTAINER
zK25O1
-
-
CR383669.17
finished
185252 DanioKey        
  GAP (type-3) length unknown                  
15 DKEYP-25A6
alt_ctg24_2_5
zKp25A6
-
-
BX323068.15
finished
156749 DanioKeypilot 3' / 5'
121946 / 290
- / -
35092
0
Identified
2017-03-07
agp2oracle
humpub
 
16 DKEY-175H17
alt_ctg24_2_5
zK175H17
-
-
CR548632.13
finished
178393 DanioKey 3' / 3'
178393 / 7694
- / -
135518
0
Identified
2017-03-07
agp2oracle
humpub
 
17 CH211-189O17
alt_ctg24_2_5
zC189O17
-
-
BX682238.10
finished
143212 CHORI-211        
  GAP (type-3) length unknown                  
19 CH211-262K18
alt_ctg24_2_6
zC262K18
-
-
BX322565.11
finished
158981 CHORI-211 5' / 3'
1 / 13570
- / -
28101
0
Identified
2017-03-07
agp2oracle
humpub
 
20 DKEY-240N24
alt_ctg24_2_6
zK240N24
-
-
CU041404.15
finished
41671 DanioKey        

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
15
Clone HTGS Phases
finished
15
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
811,744
Total finished length of fin clones w/ overlap
2,093,912
Total finished length of fin clones w/o overlap
1,282,168
Total overlap length of fin+unfin clones
811,744
Total finished length of fin+unfin clones w/ overlap
2,093,912
Total finished length of fin+unfin clones w/o overlap
1,282,168

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