ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__11 (TPF updated: 2017-09-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-236N23
alt_ctg11_2_1
zC236N23
CU104650.5
finished
2 DKEY-38O15
alt_ctg11_2_1
zK38O15
CR855388.18
finished
3 CH73-329L6
alt_ctg11_2_1
zH329L6
CU062484.10
finished
  GAP (type-3) length unknown    
5 CH211-69B7
alt_ctg11_2_2
zC69B7
BX004880.9
finished
6 DKEY-87G10
alt_ctg11_2_2
zK87G10
CR925739.5
finished
7 CH211-156L18
alt_ctg11_2_2
zC156L18
BX469912.6
finished
  GAP (type-3) length unknown    
9 DKEY-184M12
alt_ctg11_2_4
zK184M12
CR385028.15
finished
10 CH211-198E12
alt_ctg11_2_4
zC198E12
BX640548.14
finished
11 CH211-119G22
alt_ctg11_2_4
zC119G22
BX950873.9
finished
  GAP (type-3) length unknown    
13 DKEY-228N9
alt_ctg11_2_5
zK228N9
CR854846.8
finished
14 DKEY-170I11
alt_ctg11_2_5
zK170I11
BX323086.4
finished
15 DKEY-266L9
alt_ctg11_2_5
zK266L9
CR854847.7
finished
  GAP (type-3) length unknown    
17 DKEYP-74F12
alt_ctg11_2_6
zKp74F12
CT955969.9
finished
18 CH211-145C5
alt_ctg11_2_6
zC145C5
AL929306.4
finished
19 DKEY-168M18
alt_ctg11_2_6
zK168M18
CT573310.9
finished
  GAP (type-3) length unknown    
21 CH211-146M8
alt_ctg11_2_7
zC146M8
CU019544.14
finished
22 DKEY-216M6
alt_ctg11_2_7
zK216M6
CR847999.10
finished
23 CH73-43M12
alt_ctg11_2_7
zH43M12
LO017800.1
contiguous
  GAP (type-3) length unknown    
25 DKEY-85P17
alt_ctg11_2_8
zK85P17
CR848745.16
finished
26 CH211-195H1
alt_ctg11_2_8
zC195H1
BX927242.14
finished
27 CH211-252P18
alt_ctg11_2_8
zC252P18
CR812468.17
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 48838 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU104650.5 1 48838 +
48839 159388 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR855388.18 3 110552 -
159389 170622 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU062484.10 1 11234 -
170623 220622 4 N 50000 contig no
220623 413461 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004880.9 1 192839 +
413462 544984 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR925739.5 1 131523 +
544985 587592 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX469912.6 1 42608 -
587593 637592 8 N 50000 contig no
637593 700262 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR385028.15 1 62670 +
700263 916929 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX640548.14 7996 224662 -
916930 1049468 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX950873.9 1 132539 -
1049469 1099468 12 N 50000 contig no
1099469 1147692 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR854846.8 1 48224 +
1147693 1330718 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX323086.4 1 183026 +
1330719 1359197 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR854847.7 20377 48855 +
1359198 1409197 16 N 50000 contig no
1409198 1562074 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CT955969.9 1 152877 +
1562075 1738296 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL929306.4 1 176222 -
1738297 1758285 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CT573310.9 25082 45070 +
1758286 1808285 20 N 50000 contig no
1808286 1831221 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 CU019544.14 1 22936 +
1831222 2023412 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 CR847999.10 1 192191 +
2023413 2066685 23 A LO017800.1 90418 133690 +
2066686 2116685 24 N 50000 contig no
2116686 2236654 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR848745.16 14396 134364 -
2236655 2431264 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX927242.14 1 194610 +
2431265 2528857 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR812468.17 1 97593 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
21
Clone HTGS Phases
contiguous
1
finished
20
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
764,407
Total finished length of fin clones w/ overlap
2,909,889
Total finished length of fin clones w/o overlap
2,145,482
Total overlap length of fin+unfin clones
854,824
Total finished length of fin+unfin clones w/ overlap
3,043,579
Total finished length of fin+unfin clones w/o overlap
2,188,755

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