ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_COX (TPF updated: 2010-03-26)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH502-254L4
Hschr6_MHC_COX_ctg1
bCX254L4
AL671879.2
finished
2 CH502-419D21
Hschr6_MHC_COX_ctg1
bCX419D21
AL901607.1
finished
3 CH502-57P4
Hschr6_MHC_COX_ctg1
bCX57P4
AL669978.3
finished
4 CH502-196D17
Hschr6_MHC_COX_ctg1
bCX196D17
AL662859.5
finished
5 CH502-216M5
Hschr6_MHC_COX_ctg1
bCX216M5
AL662865.4
finished
6 CH502-228J24
Hschr6_MHC_COX_ctg1
bCX228J24
AL662852.9
finished
7 CH502-150E11
Hschr6_MHC_COX_ctg1
bCX150E11
AL671755.4
finished
8 CH502-147D4
Hschr6_MHC_COX_ctg1
bCX147D4
AL662857.3
finished
9 CH502-92J3
Hschr6_MHC_COX_ctg1
bCX92J3
AL732432.3
finished
10 CH502-128A13
Hschr6_MHC_COX_ctg1
bCX128A13
AL662869.2
finished
11 CH502-101I20
Hschr6_MHC_COX_ctg1
bCX101I20
AL662826.11
finished
12 CH502-231I11
Hschr6_MHC_COX_ctg1
bCX231I11
AL669813.6
finished
13 CH502-209H21
Hschr6_MHC_COX_ctg1
bCX209H21
AL671561.7
finished
14 CH502-67J3
Hschr6_MHC_COX_ctg1
bCX67J3
AL645935.7
finished
15 CH502-218N7
Hschr6_MHC_COX_ctg1
bCX218N7
AL671859.3
finished
16 CH502-300M20
Hschr6_MHC_COX_ctg1
bCX300M20
AL845450.3
finished
17 CH502-141O14
Hschr6_MHC_COX_ctg1
bCX141O14
AL662832.5
finished
18 CH502-22J1
Hschr6_MHC_COX_ctg1
bCX22J1
AL662831.3
finished
19 CH502-17K10
Hschr6_MHC_COX_ctg1
bCX17K10
AL662822.4
finished
20 CH502-98J21
Hschr6_MHC_COX_ctg1
bCX98J21
AL662825.5
finished
21 CH502-48F10
Hschr6_MHC_COX_ctg1
bCX48F10
AL732442.7
finished
22 CH502-111D4
Hschr6_MHC_COX_ctg1
bCX111D4
AL662848.6
finished
23 CH502-105N19
Hschr6_MHC_COX_ctg1
bCX105N19
AL662854.7
finished
24 CH502-31G15
Hschr6_MHC_COX_ctg1
bCX31G15
AL663093.10
finished
25 CH502-34D1
Hschr6_MHC_COX_ctg1
bCX34D1
AL662867.5
finished
26 CH502-101P6
Hschr6_MHC_COX_ctg1
bCX101P6
AL662833.4
finished
27 CH502-426A24
Hschr6_MHC_COX_ctg1
bCX426A24
AL845556.2
finished
28 CH502-25O20
Hschr6_MHC_COX_ctg1
bCX25O20
AL669854.8
finished
29 CH502-205D4
Hschr6_MHC_COX_ctg1
bCX205D4
AL662866.7
finished
30 CH502-270M2
Hschr6_MHC_COX_ctg1
bCX270M2
AL662847.6
finished
31 CH502-88C14
Hschr6_MHC_COX_ctg1
bCX88C14
AL670886.6
finished
32 CH502-40G17
Hschr6_MHC_COX_ctg1
bCX40G17
AL662834.8
finished
33 CH502-116I9
Hschr6_MHC_COX_ctg1
bCX116I9
AL662849.8
finished
34 CH502-105D18
Hschr6_MHC_COX_ctg1
bCX105D18
AL662828.5
finished
35 CH502-173E2
Hschr6_MHC_COX_ctg1
bCX173E2
AL662830.14
finished
36 CH502-556A18
Hschr6_MHC_COX_ctg1
bCX556A18
AL845557.1
finished
37 CH502-213L12
Hschr6_MHC_COX_ctg1
bCX213L12
AL670296.7
finished
38 CH502-181I15
Hschr6_MHC_COX_ctg1
bCX181I15
AL662842.3
finished
39 CH502-300D23
Hschr6_MHC_COX_ctg1
bCX300D23
AL928759.1
finished
40 CH502-254C11
Hschr6_MHC_COX_ctg1
bCX254C11
AL731683.12
finished
41 CH502-231H22
Hschr6_MHC_COX_ctg1
bCX231H22
AL713890.7
finished
42 CH502-32M13
Hschr6_MHC_COX_ctg1
bCX32M13
AL671681.4
finished
43 CH502-136A3
Hschr6_MHC_COX_ctg1
bCX136A3
AL662845.5
finished
44 CH502-22I16
Hschr6_MHC_COX_ctg1
bCX22I16
AL662824.9
finished
45 CH502-269C15
Hschr6_MHC_COX_ctg1
bCX269C15
AL713971.7
finished
46 CH502-165D10
Hschr6_MHC_COX_ctg1
bCX165D10
AL662827.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 176995 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL671879.2 1 176995 +
176996 233747 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL901607.1 2001 58752 +
233748 295252 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL669978.3 2001 63505 +
295253 354485 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662859.5 2001 61233 +
354486 486242 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662865.4 2001 133757 +
486243 626804 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662852.9 2001 142562 +
626805 633792 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL671755.4 2001 8988 +
633793 768479 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662857.3 2001 136687 +
768480 819143 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL732432.3 2001 52664 +
819144 950979 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662869.2 2001 133836 +
950980 1094410 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662826.11 2001 145431 +
1094411 1207543 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL669813.6 2001 115133 +
1207544 1311176 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL671561.7 2001 105633 +
1311177 1438787 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL645935.7 2001 129611 +
1438788 1580956 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL671859.3 2001 144169 +
1580957 1607860 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL845450.3 2001 28904 +
1607861 1767208 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662832.5 2001 161348 +
1767209 1800038 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662831.3 2001 34830 +
1800039 1960986 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662822.4 2001 162948 +
1960987 2040754 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662825.5 2001 81768 +
2040755 2110172 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL732442.7 2001 71418 +
2110173 2293789 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662848.6 2001 185617 +
2293790 2376263 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662854.7 2001 84474 +
2376264 2491590 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL663093.10 2001 117327 +
2491591 2559878 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662867.5 2001 70288 +
2559879 2726765 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662833.4 2001 168887 +
2726766 2767768 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL845556.2 2001 43003 +
2767769 2834148 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL669854.8 2001 68380 +
2834149 2929463 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662866.7 2001 97315 +
2929464 3063247 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662847.6 2001 135784 +
3063248 3151979 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL670886.6 2001 90732 +
3151980 3329873 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662834.8 2001 179894 +
3329874 3416332 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662849.8 2001 88459 +
3416333 3553324 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662828.5 2001 138992 +
3553325 3654651 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662830.14 2001 103327 +
3654652 3701929 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL845557.1 2001 49278 +
3701930 3860552 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL670296.7 2001 160623 +
3860553 3989371 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662842.3 2001 130819 +
3989372 3993279 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL928759.1 2001 5908 +
3993280 4075157 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL731683.12 2001 83878 +
4075158 4108568 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL713890.7 2001 35411 +
4108569 4273371 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL671681.4 2001 166803 +
4273372 4368499 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662845.5 2001 97128 +
4368500 4554463 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662824.9 2001 187964 +
4554464 4623084 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL713971.7 2001 70621 +
4623085 4731878 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 46 AL662827.3 2001 110794 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
46
Clone HTGS Phases
finished
46
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
90,000
Total finished length of fin clones w/ overlap
4,821,878
Total finished length of fin clones w/o overlap
4,731,878
Total overlap length of fin+unfin clones
90,000
Total finished length of fin+unfin clones w/ overlap
4,821,878
Total finished length of fin+unfin clones w/o overlap
4,731,878

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Other links

* quick link - http://q.sanger.ac.uk/6ckjug0y