ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__4 (TPF updated: 2017-11-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-153K10
alt_ctg4_2_1
zK153K10
BX901962.8
finished
2 DKEYP-67G10
alt_ctg4_2_1
zKp67G10
BX465859.13
finished
3 DKEY-22L11
alt_ctg4_2_1
zK22L11
BX248111.7
finished
  GAP (type-3) length unknown    
5 DKEY-97C7
alt_ctg4_2_2
zK97C7
AL935187.13
finished
6 CH211-215E7
alt_ctg4_2_2
zC215E7
BX001003.6
finished
7 CH211-149P5
alt_ctg4_2_2
zC149P5
AL929141.7
finished
  GAP (type-3) length unknown    
9 DKEY-56L2
alt_ctg4_2_3
zK56L2
AL935319.8
finished
10 CH211-33H21
alt_ctg4_2_3
zC33H21
CT025717.13
finished
11 CH211-198D18
alt_ctg4_2_3
zC198D18
AL935165.5
finished
  GAP (type-3) length unknown    
13 DKEY-193G4
alt_ctg4_2_4
zK193G4
CU137645.14
finished
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
BX088697.9
finished
15 CH211-15L13
alt_ctg4_2_4
CONTAINED
zC15L13
BX470126.27
finished
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
BX088697.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 140434 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX901962.8 1 140434 +
140435 354639 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX465859.13 1 214205 -
354640 440223 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248111.7 99440 185023 +
440224 490223 4 N 50000 contig no
490224 698536 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL935187.13 55205 263517 -
698537 910939 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX001003.6 1 212403 +
910940 976672 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL929141.7 1 65733 -
976673 1026672 8 N 50000 contig no
1026673 1076016 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935319.8 57463 106806 -
1076017 1242841 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CT025717.13 1 166825 -
1242842 1350469 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935165.5 1 107628 -
1350470 1400469 12 N 50000 contig no
1400470 1693453 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 CU137645.14 1 292984 -
1693454 1786599 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX088697.9 61312 154457 -
1786600 1820799 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX470126.27 118983 153182 +
1820800 1847994 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX088697.9 1 27195 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
669,706
Total finished length of fin clones w/ overlap
2,340,506
Total finished length of fin clones w/o overlap
1,670,800
Total overlap length of fin+unfin clones
669,706
Total finished length of fin+unfin clones w/ overlap
2,340,506
Total finished length of fin+unfin clones w/o overlap
1,670,800

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