ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__4 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-153K10
alt_ctg4_2_1
zK153K10
EPN details
BX901962.8
finished
2 DKEYP-67G10
alt_ctg4_2_1
zKp67G10
EPN details
BX465859.13
finished
3 DKEY-22L11
alt_ctg4_2_1
zK22L11
EPN details
BX248111.7
finished
  GAP (type-3) length unknown    
5 DKEY-97C7
alt_ctg4_2_2
zK97C7
EPN details
AL935187.13
finished
6 CH211-215E7
alt_ctg4_2_2
zC215E7
EPN details
BX001003.6
finished
7 CH211-149P5
alt_ctg4_2_2
zC149P5
EPN details
AL929141.7
finished
  GAP (type-3) length unknown    
9 DKEY-56L2
alt_ctg4_2_3
zK56L2
EPN details
AL935319.8
finished
10 CH211-33H21
alt_ctg4_2_3
zC33H21
EPN details
CT025717.13
finished
11 CH211-198D18
alt_ctg4_2_3
zC198D18
EPN details
AL935165.5
finished
  GAP (type-3) length unknown    
13 DKEY-193G4
alt_ctg4_2_4
zK193G4
EPN details
CU137645.14
finished
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
EPN details
BX088697.9
finished
15 CH211-15L13
alt_ctg4_2_4
CONTAINED
zC15L13
EPN details
BX470126.27
finished
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
EPN details
BX088697.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 140434 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX901962.8 1 140434 +
140435 354639 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX465859.13 1 214205 -
354640 440223 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248111.7 99440 185023 +
440224 490223 4 N 50000 contig no
490224 698536 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL935187.13 55205 263517 -
698537 910939 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX001003.6 1 212403 +
910940 976672 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL929141.7 1 65733 -
976673 1026672 8 N 50000 contig no
1026673 1076016 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935319.8 57463 106806 -
1076017 1242841 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CT025717.13 1 166825 -
1242842 1350469 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935165.5 1 107628 -
1350470 1400469 12 N 50000 contig no
1400470 1693453 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 CU137645.14 1 292984 -
1693454 1786599 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX088697.9 61312 154457 -
1786600 1820799 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX470126.27 118983 153182 +
1820800 1847994 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 BX088697.9 1 27195 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-153K10
alt_ctg4_2_1
zK153K10
-
-
BX901962.8
finished
182550 DanioKey 3' / 3'
140434 / 214205
- / -
42116
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEYP-67G10
alt_ctg4_2_1
zKp67G10
-
-
BX465859.13
finished
214205 DanioKeypilot 5' / 5'
1 / 99440
- / -
99439
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-22L11
alt_ctg4_2_1
zK22L11
-
-
BX248111.7
finished
185023 DanioKey        
  GAP (type-3) length unknown                  
5 DKEY-97C7
alt_ctg4_2_2
zK97C7
-
-
AL935187.13
finished
263517 DanioKey 5' / 5'
55205 / 1
- / -
55204
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-215E7
alt_ctg4_2_2
zC215E7
-
-
BX001003.6
finished
212403 CHORI-211 3' / 3'
212403 / 65733
- / -
116383
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH211-149P5
alt_ctg4_2_2
zC149P5
-
-
AL929141.7
finished
182116 CHORI-211        
  GAP (type-3) length unknown                  
9 DKEY-56L2
alt_ctg4_2_3
zK56L2
-
-
AL935319.8
finished
106806 DanioKey 5' / 3'
57463 / 166825
- / -
57462
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-33H21
alt_ctg4_2_3
zC33H21
-
-
CT025717.13
finished
166825 CHORI-211 5' / 3'
1 / 107628
- / -
75120
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-198D18
alt_ctg4_2_3
zC198D18
-
-
AL935165.5
finished
182748 CHORI-211        
  GAP (type-3) length unknown                  
13 DKEY-193G4
alt_ctg4_2_4
zK193G4
-
-
CU137645.14
finished
292984 DanioKey 5' / 3'
1 / 154457
- / -
43689
0
Identified
2016-02-24
fetch_ncbi...
humpub
 
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
-
-
BX088697.9
finished
198147 CHORI-211 5' / 5'
61312 / 118983
- / -
153182
0
Identified
2017-03-07
agp2oracle
humpub
 
15 CH211-15L13
alt_ctg4_2_4
CONTAINED
zC15L13
-
-
BX470126.27
finished
153182 CHORI-211 3' / 3'
153182 / 27195
- / -
153182
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-224C7
alt_ctg4_2_4
CONTAINER
zC224C7
-
-
BX088697.9
finished
198147 CHORI-211        

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
669,706
Total finished length of fin clones w/ overlap
2,340,506
Total finished length of fin clones w/o overlap
1,670,800
Total overlap length of fin+unfin clones
669,706
Total finished length of fin+unfin clones w/ overlap
2,340,506
Total finished length of fin+unfin clones w/o overlap
1,670,800

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