ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__5 (TPF updated: 2018-01-16)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CH211-155M12
alt_ctg5_2_1
zC155M12
EPN details
AL928901.8
finished
2 CH211-12E13
alt_ctg5_2_1
CONTAINER
zC12E13
EPN details
AL845369.7
finished
3 CH73-346N20
alt_ctg5_2_1
CONTAINED
zH346N20
EPN details
CT009603.14
finished
2 CH211-12E13
alt_ctg5_2_1
CONTAINER
zC12E13
EPN details
AL845369.7
finished
  GAP (type-3) length unknown    
5 CH73-126P21
alt_ctg5_2_2
zH126P21
EPN details
FP015875.13
finished
6 CH211-125F4
alt_ctg5_2_2
zC125F4
EPN details
CU655815.21
finished
7 CH211-241P16
alt_ctg5_2_2
zC241P16
EPN details
CR847974.29
finished
  GAP (type-3) length unknown    
9 CH211-133N22
alt_ctg5_2_3
zC133N22
EPN details
BX666060.8
finished
10 CH211-153K23
alt_ctg5_2_3
zC153K23
EPN details
AL935064.7
finished
11 DKEY-21K4
alt_ctg5_2_3
zK21K4
EPN details
AL929297.10
finished
  GAP (type-3) length unknown    
13 DKEY-287M11
alt_ctg5_2_4
zK287M11
EPN details
BX901915.5
finished
14 CH211-287K8
alt_ctg5_2_4
zC287K8
EPN details
AL844899.33
finished
15 DKEY-99O2
alt_ctg5_2_4
zK99O2
EPN details
CR450846.7
finished
16 CH73-223A15
alt_ctg5_2_4
zH223A15
EPN details
CU467983.7
finished
  GAP (type-3) length unknown    
18 RP71-10D23
alt_ctg5_2_5
bZ10D23
EPN details
BX470066.7
finished
19 DKEY-61L1
alt_ctg5_2_5
CONTAINER
zK61L1
EPN details
CT956057.9
finished
20 DKEY-254K18
alt_ctg5_2_5
CONTAINED
zK254K18
EPN details
CR392005.15
finished
19 DKEY-61L1
alt_ctg5_2_5
CONTAINER
zK61L1
EPN details
CT956057.9
finished
  GAP (type-3) length unknown    
22 CH211-215C18
alt_ctg5_2_6
CONTAINER
zC215C18
EPN details
BX276128.8
finished
23 DKEY-30K9
alt_ctg5_2_6
CONTAINED
zK30K9
EPN details
CR381654.7
finished
22 CH211-215C18
alt_ctg5_2_6
CONTAINER
zC215C18
EPN details
BX276128.8
finished
  GAP (type-3) length unknown    
25 CH211-208H16
alt_ctg5_2_7
zC208H16
EPN details
CR925757.8
finished
26 DKEYP-57C9
alt_ctg5_2_7
zKp57C9
EPN details
BX324171.9
finished
27 DKEY-2N12
alt_ctg5_2_7
zK2N12
EPN details
CR855258.6
finished
  GAP (type-3) length unknown    
29 DKEY-17O15
alt_ctg5_2_8
zK17O15
EPN details
BX927261.8
finished
30 DKEY-40N8
alt_ctg5_2_8
zK40N8
EPN details
BX897689.5
finished
31 CH211-1C14
alt_ctg5_2_8
zC1C14
EPN details
CT025762.7
finished
  GAP (type-3) length unknown    
33 DKEY-199L1
alt_ctg5_2_9
zK199L1
EPN details
BX005419.7
finished
34 CH211-183C15
alt_ctg5_2_9
zC183C15
EPN details
CR558303.7
finished
35 CH211-222C11
alt_ctg5_2_9
zC222C11
EPN details
CR735112.10
finished
36 DKEYP-30C3
alt_ctg5_2_9
zKp30C3
EPN details
CR854992.5
finished
  GAP (type-3) length unknown    
38 CH211-15O14
alt_ctg5_2_10
CONTAINER
zC15O14
EPN details
BX950187.14
finished
39 CH211-184N21
alt_ctg5_2_10
CONTAINED
zC184N21
EPN details
BX324184.10
finished
38 CH211-15O14
alt_ctg5_2_10
CONTAINER
zC15O14
EPN details
BX950187.14
finished
  GAP (type-3) length unknown    
41 CH73-64N4
alt_ctg5_2_11
zH64N4
EPN details
FP015854.16
finished
42 DKEY-200F8
alt_ctg5_2_11
zK200F8
EPN details
BX088527.5
finished
43 CH73-201I7
alt_ctg5_2_11
zH201I7
EPN details
CU915819.9
finished
  GAP (type-3) length unknown    
45 DKEY-271M10
alt_ctg5_2_12
zK271M10
EPN details
CR392034.10
finished
46 DKEY-277F23
alt_ctg5_2_12
zK277F23
EPN details
CT737171.3
finished
  GAP (type-3) length unknown    
48 CH211-127D4
alt_ctg5_2_13
CONTAINER
zC127D4
EPN details
AL928954.9
finished
49 CH211-61G16
alt_ctg5_2_13
CONTAINED
zC61G16
EPN details
BX942836.11
finished
48 CH211-127D4
alt_ctg5_2_13
CONTAINER
zC127D4
EPN details
AL928954.9
finished
  GAP (type-3) length unknown    
51 CH211-69I3
alt_ctg5_2_14
zC69I3
EPN details
CR925761.26
finished
52 DKEY-202B10
alt_ctg5_2_14
zK202B10
EPN details
BX324226.16
finished
53 CH211-202F5
alt_ctg5_2_14
zC202F5
EPN details
BX510338.7
finished
  GAP (type-3) length unknown    
55 CH211-275J6
alt_ctg5_2_15
zC275J6
EPN details
CR847941.14
finished
56 CH211-286A10
alt_ctg5_2_15
zC286A10
EPN details
BX072578.10
finished
57 CH211-154E10
alt_ctg5_2_15
zC154E10
EPN details
CR753888.14
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 145957 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL928901.8 1 145957 +
145958 145958 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL845369.7 2001 2001 +
145959 215498 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CT009603.14 1 69540 -
215499 344256 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL845369.7 62224 190981 +
344257 394256 5 N 50000 contig no
394257 482921 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 FP015875.13 30301 118965 -
482922 645623 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 CU655815.21 1 162702 -
645624 698152 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 CR847974.29 1 52529 -
698153 748152 9 N 50000 contig no
748153 828091 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX666060.8 100410 180348 -
828092 981079 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 AL935064.7 4269 157256 -
981080 1037689 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 AL929297.10 1 56610 -
1037690 1087689 13 N 50000 contig no
1087690 1155925 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 BX901915.5 19836 88071 -
1155926 1323782 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 AL844899.33 1 167857 +
1323783 1351634 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CR450846.7 1 27852 -
1351635 1362704 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CU467983.7 11276 22345 +
1362705 1412704 18 N 50000 contig no
1412705 1591203 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 22 BX470066.7 1 178499 -
1591204 1591204 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 22 CT956057.9 131161 131161 -
1591205 1625935 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 22 CR392005.15 20374 55104 -
1625936 1721125 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 22 CT956057.9 1 95190 -
1721126 1771125 23 N 50000 contig no
1771126 1850867 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 BX276128.8 96720 176461 -
1850868 1924625 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 CR381654.7 1582 75339 -
1924626 1945081 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 BX276128.8 1 20456 -
1945082 1995081 27 N 50000 contig no
1995082 2123848 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CR925757.8 25851 154617 -
2123849 2274916 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX324171.9 1 151068 -
2274917 2307948 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CR855258.6 1 33032 -
2307949 2357948 31 N 50000 contig no
2357949 2366152 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX927261.8 219119 227322 -
2366153 2582781 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX897689.5 1 216629 -
2582782 2633497 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 CT025762.7 1 50716 -
2633498 2683497 35 N 50000 contig no
2683498 2813455 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 BX005419.7 1 129958 +
2813456 2968553 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 CR558303.7 1 155098 +
2968554 3123096 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 CR735112.10 1 154543 -
3123097 3200400 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 CR854992.5 1 77304 -
3200401 3250400 40 N 50000 contig no
3250401 3356130 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX950187.14 54527 160256 -
3356131 3415101 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX324184.10 60 59030 +
3415102 3419772 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX950187.14 1 4671 -
3419773 3469772 44 N 50000 contig no
3469773 3532253 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 FP015854.16 1 62481 +
3532254 3544978 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 BX088527.5 1 12725 +
3544979 3649648 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 CU915819.9 5 104674 +
3649649 3699648 48 N 50000 contig no
3699649 3751666 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CR392034.10 1 52018 +
3751667 3913697 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CT737171.3 1 162031 +
3913698 3963697 51 N 50000 contig no
3963698 3977659 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL928954.9 1 13962 +
3977660 4146267 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX942836.11 1 168608 -
4146268 4173098 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL928954.9 196058 222888 +
4173099 4223098 55 N 50000 contig no
4223099 4235748 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR925761.26 1 12650 +
4235749 4357167 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX324226.16 1 121419 +
4357168 4501212 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX510338.7 65293 209337 +
4501213 4551212 59 N 50000 contig no
4551213 4619311 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 CR847941.14 83737 151835 -
4619312 4802809 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 BX072578.10 1 183498 -
4802810 4903253 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 CR753888.14 1 100444 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-155M12
alt_ctg5_2_1
zC155M12
-
-
AL928901.8
finished
145957 CHORI-211 3' / 5'
145957 / 2001
- / -
2000
0
Identified
2018-01-16
agp2oracle
humpub
 
2 CH211-12E13
alt_ctg5_2_1
CONTAINER
zC12E13
-
-
AL845369.7
finished
190981 CHORI-211 3' / 3'
2001 / 69540
- / -
69540
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH73-346N20
alt_ctg5_2_1
CONTAINED
zH346N20
-
-
CT009603.14
finished
69540 CHORI-73 5' / 5'
1 / 62224
- / -
69540
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-12E13
alt_ctg5_2_1
CONTAINER
zC12E13
-
-
AL845369.7
finished
190981 CHORI-211        
  GAP (type-3) length unknown                  
5 CH73-126P21
alt_ctg5_2_2
zH126P21
-
-
FP015875.13
finished
118965 CHORI-73 5' / 3'
30301 / 162702
- / -
30363
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-125F4
alt_ctg5_2_2
zC125F4
-
-
CU655815.21
finished
162765 CHORI-211 5' / 3'
1 / 52529
- / -
136938
0
Identified
2011-03-30
agp2oracle
jt8
 
7 CH211-241P16
alt_ctg5_2_2
zC241P16
-
-
CR847974.29
finished
189467 CHORI-211        
  GAP (type-3) length unknown                  
9 CH211-133N22
alt_ctg5_2_3
zC133N22
-
-
BX666060.8
finished
180348 CHORI-211 5' / 3'
100410 / 157256
- / -
100409
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-153K23
alt_ctg5_2_3
zC153K23
-
-
AL935064.7
finished
157256 CHORI-211 5' / 3'
4269 / 56610
- / -
51732
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-21K4
alt_ctg5_2_3
zK21K4
-
-
AL929297.10
finished
104074 DanioKey        
  GAP (type-3) length unknown                  
13 DKEY-287M11
alt_ctg5_2_4
zK287M11
-
-
BX901915.5
finished
88071 DanioKey 5' / 5'
19836 / 1
- / -
19835
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-287K8
alt_ctg5_2_4
zC287K8
-
-
AL844899.33
finished
167857 CHORI-211 3' / 3'
167857 / 27852
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
15 DKEY-99O2
alt_ctg5_2_4
zK99O2
-
-
CR450846.7
finished
29852 DanioKey 5' / 5'
1 / 11276
- / -
11275
0
Identified
2017-03-07
agp2oracle
humpub
 
16 CH73-223A15
alt_ctg5_2_4
zH223A15
-
-
CU467983.7
finished
22345 CHORI-73        
  GAP (type-3) length unknown                  
18 RP71-10D23
alt_ctg5_2_5
bZ10D23
-
-
BX470066.7
finished
178499 RPCI-71 5' / 3'
1 / 131161
- / -
2000
0
Identified
2018-01-16
agp2oracle
humpub
 
19 DKEY-61L1
alt_ctg5_2_5
CONTAINER
zK61L1
-
-
CT956057.9
finished
133161 DanioKey 5' / 3'
131161 / 55104
- / -
55105
0
Identified
2017-03-07
agp2oracle
humpub
 
20 DKEY-254K18
alt_ctg5_2_5
CONTAINED
zK254K18
-
-
CR392005.15
finished
55105 DanioKey 5' / 3'
20374 / 95190
- / -
55105
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEY-61L1
alt_ctg5_2_5
CONTAINER
zK61L1
-
-
CT956057.9
finished
133161 DanioKey        
  GAP (type-3) length unknown                  
22 CH211-215C18
alt_ctg5_2_6
CONTAINER
zC215C18
-
-
BX276128.8
finished
176461 CHORI-211 5' / 3'
96720 / 75339
- / -
75485
0
Identified
2017-03-31
agp2oracle
humpub
 
23 DKEY-30K9
alt_ctg5_2_6
CONTAINED
zK30K9
-
-
CR381654.7
finished
75485 DanioKey 5' / 3'
1582 / 20456
- / -
75485
0
Identified
2017-03-31
agp2oracle
humpub
 
22 CH211-215C18
alt_ctg5_2_6
CONTAINER
zC215C18
-
-
BX276128.8
finished
176461 CHORI-211        
  GAP (type-3) length unknown                  
25 CH211-208H16
alt_ctg5_2_7
zC208H16
-
-
CR925757.8
finished
154617 CHORI-211 5' / 3'
25851 / 151068
- / -
25850
0
Identified
2017-03-07
agp2oracle
humpub
 
26 DKEYP-57C9
alt_ctg5_2_7
zKp57C9
-
-
BX324171.9
finished
151068 DanioKeypilot 5' / 3'
1 / 33032
- / -
108586
0
Identified
2017-03-07
agp2oracle
humpub
 
27 DKEY-2N12
alt_ctg5_2_7
zK2N12
-
-
CR855258.6
finished
141618 DanioKey        
  GAP (type-3) length unknown                  
29 DKEY-17O15
alt_ctg5_2_8
zK17O15
-
-
BX927261.8
finished
227322 DanioKey 5' / 3'
219119 / 216629
- / -
219118
0
Identified
2017-03-07
agp2oracle
humpub
 
30 DKEY-40N8
alt_ctg5_2_8
zK40N8
-
-
BX897689.5
finished
216629 DanioKey 5' / 3'
1 / 50716
- / -
14786
0
Identified
2017-03-07
agp2oracle
humpub
 
31 CH211-1C14
alt_ctg5_2_8
zC1C14
-
-
CT025762.7
finished
65502 CHORI-211        
  GAP (type-3) length unknown                  
33 DKEY-199L1
alt_ctg5_2_9
zK199L1
-
-
BX005419.7
finished
179474 DanioKey 3' / 5'
129958 / 1
- / -
49516
0
Identified
2017-03-07
agp2oracle
humpub
 
34 CH211-183C15
alt_ctg5_2_9
zC183C15
-
-
CR558303.7
finished
155098 CHORI-211 3' / 3'
155098 / 154543
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
35 CH211-222C11
alt_ctg5_2_9
zC222C11
-
-
CR735112.10
finished
156543 CHORI-211 5' / 3'
1 / 77304
- / -
27044
0
Identified
2017-03-07
agp2oracle
humpub
 
36 DKEYP-30C3
alt_ctg5_2_9
zKp30C3
-
-
CR854992.5
finished
104348 DanioKeypilot        
  GAP (type-3) length unknown                  
38 CH211-15O14
alt_ctg5_2_10
CONTAINER
zC15O14
-
-
BX950187.14
finished
160256 CHORI-211 5' / 5'
54527 / 60
- / -
59030
0
Identified
2017-03-31
agp2oracle
humpub
 
39 CH211-184N21
alt_ctg5_2_10
CONTAINED
zC184N21
-
-
BX324184.10
finished
59030 CHORI-211 3' / 3'
59030 / 4671
- / -
59030
0
Identified
2017-03-31
agp2oracle
humpub
 
38 CH211-15O14
alt_ctg5_2_10
CONTAINER
zC15O14
-
-
BX950187.14
finished
160256 CHORI-211        
  GAP (type-3) length unknown                  
41 CH73-64N4
alt_ctg5_2_11
zH64N4
-
-
FP015854.16
finished
77078 CHORI-73 3' / 5'
62481 / 1
- / -
14597
0
Identified
2017-03-07
agp2oracle
humpub
 
42 DKEY-200F8
alt_ctg5_2_11
zK200F8
-
-
BX088527.5
finished
148904 DanioKey 3' / 5'
12725 / 5
- / -
136183
0
Identified
2017-03-07
agp2oracle
humpub
 
43 CH73-201I7
alt_ctg5_2_11
zH201I7
-
-
CU915819.9
finished
104674 CHORI-73        
  GAP (type-3) length unknown                  
45 DKEY-271M10
alt_ctg5_2_12
zK271M10
-
-
CR392034.10
finished
189356 DanioKey 3' / 5'
52018 / 1
- / -
137338
0
Identified
2013-01-18
fetch_ncbi...
humpub
 
46 DKEY-277F23
alt_ctg5_2_12
zK277F23
-
-
CT737171.3
finished
162031 DanioKey        
  GAP (type-3) length unknown                  
48 CH211-127D4
alt_ctg5_2_13
CONTAINER
zC127D4
-
-
AL928954.9
finished
222888 CHORI-211 3' / 3'
13962 / 168608
- / -
168608
0
Identified
2017-03-07
agp2oracle
humpub
 
49 CH211-61G16
alt_ctg5_2_13
CONTAINED
zC61G16
-
-
BX942836.11
finished
168608 CHORI-211 5' / 5'
1 / 196058
- / -
168608
0
Identified
2017-03-07
agp2oracle
humpub
 
48 CH211-127D4
alt_ctg5_2_13
CONTAINER
zC127D4
-
-
AL928954.9
finished
222888 CHORI-211        
  GAP (type-3) length unknown                  
51 CH211-69I3
alt_ctg5_2_14
zC69I3
-
-
CR925761.26
finished
85755 CHORI-211 3' / 5'
12650 / 1
- / -
73105
0
Identified
2017-03-07
agp2oracle
humpub
 
52 DKEY-202B10
alt_ctg5_2_14
zK202B10
-
-
BX324226.16
finished
121419 DanioKey 3' / 5'
121419 / 65293
- / -
65292
0
Identified
2017-03-07
agp2oracle
humpub
 
53 CH211-202F5
alt_ctg5_2_14
zC202F5
-
-
BX510338.7
finished
209337 CHORI-211        
  GAP (type-3) length unknown                  
55 CH211-275J6
alt_ctg5_2_15
zC275J6
-
-
CR847941.14
finished
151835 CHORI-211 5' / 3'
83737 / 183498
- / -
83736
0
Identified
2017-03-07
agp2oracle
humpub
 
56 CH211-286A10
alt_ctg5_2_15
zC286A10
-
-
BX072578.10
finished
183498 CHORI-211 5' / 3'
1 / 100444
- / -
60711
0
Identified
2017-03-07
agp2oracle
humpub
 
57 CH211-154E10
alt_ctg5_2_15
zC154E10
-
-
CR753888.14
finished
161155 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
14
Gap types
type-3
14
Total clones
43
Clone HTGS Phases
finished
43
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,216,652
Total finished length of fin clones w/ overlap
6,004,232
Total finished length of fin clones w/o overlap
3,787,580
Total overlap length of fin+unfin clones
2,216,652
Total finished length of fin+unfin clones w/ overlap
6,004,232
Total finished length of fin+unfin clones w/o overlap
3,787,580

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