ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__23 (TPF updated: 2017-11-25)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-90A13
alt_ctg23_2_1
zK90A13
BX897727.17
finished
2 DKEYP-12B1
alt_ctg23_2_1
zKp12B1
CT737136.8
finished
3 DKEY-279C17
alt_ctg23_2_1
zK279C17
CR936486.7
finished
  GAP (type-3) length unknown    
5 CH211-218G4
alt_ctg23_2_2
zC218G4
CR352242.13
finished
6 DKEYP-117H10
alt_ctg23_2_2
zKp117H10
BX957247.4
finished
7 DKEYP-84G9
alt_ctg23_2_2
zKp84G9
BX537335.12
finished
  GAP (type-3) length unknown    
9 CH211-224L10
alt_ctg23_2_3
zC224L10
BX296551.4
finished
10 CH211-15J16
alt_ctg23_2_3
zC15J16
BX927368.13
finished
11 RP71-1K13
alt_ctg23_2_3
bZ1K13
AL732515.15
finished
  GAP (type-3) length unknown    
13 CH73-289A15
alt_ctg23_2_4
zH289A15
CT573385.8
finished
14 DKEY-47C8
alt_ctg23_2_4
zK47C8
CR450723.12
finished
15 DKEY-93L1
alt_ctg23_2_4
zK93L1
CR352234.11
finished
  GAP (type-3) length unknown    
17 DKEY-68L7
alt_ctg23_2_5
zK68L7
BX005235.9
finished
18 CH211-222H22
alt_ctg23_2_5
zC222H22
AL954133.5
finished
19 DKEYP-77G7
alt_ctg23_2_5
zKp77G7
BX571765.6
finished
20 DKEY-155K21
alt_ctg23_2_5
zK155K21
CR354612.18
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 210080 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX897727.17 26198 236277 -
210081 391946 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT737136.8 27 181892 +
391947 442239 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR936486.7 1 50293 -
442240 492239 4 N 50000 contig no
492240 579721 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR352242.13 36022 123503 -
579722 735794 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX957247.4 1 156073 -
735795 802999 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX537335.12 119362 186566 +
803000 852999 8 N 50000 contig no
853000 926050 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX296551.4 1 73051 +
926051 1102488 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX927368.13 1 176438 +
1102489 1205023 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL732515.15 51892 154426 +
1205024 1255023 12 N 50000 contig no
1255024 1307255 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CT573385.8 1 52232 +
1307256 1538356 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR450723.12 3887 234987 -
1538357 1669585 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR352234.11 66889 198117 +
1669586 1719585 16 N 50000 contig no
1719586 1848171 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX005235.9 83033 211618 -
1848172 2054452 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AL954133.5 1 206281 -
2054453 2192440 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX571765.6 2001 139988 +
2192441 2231394 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR354612.18 85885 124838 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
16
Clone HTGS Phases
finished
16
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
665,025
Total finished length of fin clones w/ overlap
2,696,419
Total finished length of fin clones w/o overlap
2,031,394
Total overlap length of fin+unfin clones
665,025
Total finished length of fin+unfin clones w/ overlap
2,696,419
Total finished length of fin+unfin clones w/o overlap
2,031,394

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