ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__6 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-15G22
alt_ctg6_2_1
zK15G22
BX088724.6
finished
2 DKEYP-110B6
alt_ctg6_2_1
zKp110B6
BX890550.10
finished
3 CH211-48E20
alt_ctg6_2_1
zC48E20
CT027745.11
finished
4 CH211-223I3
alt_ctg6_2_1
zC223I3
BX119909.5
finished
  GAP (type-3) length unknown    
6 CH211-186M12
alt_ctg6_2_2
CONTAINER
zC186M12
BX649631.8
finished
7 CH73-6G23
alt_ctg6_2_2
CONTAINED
zH6G23
CU407320.10
finished
6 CH211-186M12
alt_ctg6_2_2
CONTAINER
zC186M12
BX649631.8
finished
  GAP (type-3) length unknown    
9 DKEY-45D16
alt_ctg6_2_3
zK45D16
BX537277.15
finished
10 DKEY-164L15
alt_ctg6_2_3
zK164L15
CR931800.13
finished
11 DKEYP-7C3
alt_ctg6_2_3
zKp7C3
BX323032.6
finished
  GAP (type-3) length unknown    
13 DKEY-31G6
alt_ctg6_2_4
zK31G6
CR854963.9
finished
14 DKEY-181I1
alt_ctg6_2_4
zK181I1
CU457793.10
finished
15 DKEY-166L1
alt_ctg6_2_4
zK166L1
CR589950.13
finished
16 DKEY-260O3
alt_ctg6_2_4
zK260O3
CU137721.9
finished
  GAP (type-3) length unknown    
18 CH211-260P11
alt_ctg6_2_6
zC260P11
CR387927.9
finished
19 DKEY-247F18
alt_ctg6_2_6
zK247F18
BX908749.6
finished
20 CH211-183E19
alt_ctg6_2_6
zC183E19
CU929170.9
finished
  GAP (type-3) length unknown    
22 DKEYP-85H7
alt_ctg6_2_7
zKp85H7
BX927081.20
finished
23 DKEY-197A14
alt_ctg6_2_7
zK197A14
CU137682.11
finished
24 CH211-149L13
alt_ctg6_2_7
zC149L13
AL929019.4
finished
  GAP (type-3) length unknown    
26 DKEY-107I22
alt_ctg6_2_8
zK107I22
CR626936.8
finished
27 DKEY-240N8
alt_ctg6_2_8
zK240N8
BX005335.9
finished
28 CH73-14H10
alt_ctg6_2_8
zH14H10
FP101882.5
finished
  GAP (type-3) length unknown    
30 DKEY-149G8
alt_ctg6_2_9
zK149G8
AL954637.6
finished
31 CH211-258N9
alt_ctg6_2_9
zC258N9
CT573327.6
finished
32 CH73-13M21
alt_ctg6_2_9
zH13M21
CU459069.6
finished
  GAP (type-3) length unknown    
34 DKEY-1K24
alt_ctg6_2_10
CONTAINER
zK1K24
BX936440.20
finished
35 CH211-157E20
alt_ctg6_2_10
CONTAINED
zC157E20
BX510348.6
finished
34 DKEY-1K24
alt_ctg6_2_10
CONTAINER
zK1K24
BX936440.20
finished
  GAP (type-3) length unknown    
37 CH211-113B13
alt_ctg6_2_11
zC113B13
CR394554.6
finished
38 CH211-207G4
alt_ctg6_2_11
zC207G4
AL773598.5
finished
39 DKEY-60G10
alt_ctg6_2_11
zK60G10
CR933860.7
finished
  GAP (type-3) length unknown    
41 DKEY-87O12
alt_ctg6_2_12
zK87O12
CR855206.9
finished
42 CH211-222N24
alt_ctg6_2_12
zC222N24
AL807381.6
finished
43 CH211-286N19
alt_ctg6_2_12
zC286N19
CR936976.15
finished
44 CH73-208B20
alt_ctg6_2_12
zH208B20
LO018007.2
contiguous
  GAP (type-3) length unknown    
46 DKEY-52N11
alt_ctg6_2_13
zK52N11
BX890631.11
finished
47 DKEY-238I7
alt_ctg6_2_13
zK238I7
BX072568.5
finished
48 DKEY-50M7
alt_ctg6_2_13
zK50M7
CR385041.16
finished
  GAP (type-3) length unknown    
50 CH73-187P21
alt_ctg6_2_14
zH187P21
CU467856.6
finished
51 DKEYP-59A2
alt_ctg6_2_14
zKp59A2
AL928872.7
finished
52 CH211-233B16
alt_ctg6_2_14
zC233B16
AL954698.9
finished
  GAP (type-3) length unknown    
54 CH211-139G10
alt_ctg6_2_15
zC139G10
BX005101.8
finished
55 DKEY-38L7
alt_ctg6_2_15
zK38L7
BX255933.7
finished
56 DKEY-7K24
alt_ctg6_2_15
zK7K24
BX546446.15
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 140285 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX088724.6 58084 198368 -
140286 314598 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX890550.10 1 174313 -
314599 457564 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CT027745.11 1 142966 -
457565 630440 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX119909.5 1 172876 -
630441 680440 5 N 50000 contig no
680441 782017 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX649631.8 66779 168355 -
782018 833526 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 CU407320.10 5404 56912 -
833527 843635 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX649631.8 1 10109 -
843636 893635 9 N 50000 contig no
893636 1116491 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX537277.15 1 222856 +
1116492 1312447 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CR931800.13 1 195956 +
1312448 1411178 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX323032.6 68376 167106 +
1411179 1461178 13 N 50000 contig no
1461179 1542235 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CR854963.9 100325 181381 -
1542236 1711051 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CU457793.10 1 168816 +
1711052 1918215 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CR589950.13 2001 209164 +
1918216 2050085 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CU137721.9 74619 206488 +
2050086 2100085 18 N 50000 contig no
2100086 2241365 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CR387927.9 1 141280 +
2241366 2427138 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX908749.6 242 186014 +
2427139 2545247 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CU929170.9 53695 171803 +
2545248 2595247 22 N 50000 contig no
2595248 2627047 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX927081.20 105951 137750 -
2627048 2832425 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CU137682.11 1 205378 -
2832426 2879290 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AL929019.4 1 46865 -
2879291 2929290 26 N 50000 contig no
2929291 2933801 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CR626936.8 71290 75800 -
2933802 3144895 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX005335.9 1 211094 -
3144896 3170982 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 FP101882.5 116468 142554 +
3170983 3220982 30 N 50000 contig no
3220983 3305757 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AL954637.6 1 84775 +
3305758 3402632 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CT573327.6 98 96972 +
3402633 3485718 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CU459069.6 6125 89210 +
3485719 3535718 34 N 50000 contig no
3535719 3557903 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX936440.20 175560 197744 -
3557904 3727177 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX510348.6 1 169274 -
3727178 3732103 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX936440.20 1 4926 -
3732104 3782103 38 N 50000 contig no
3782104 3830569 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 CR394554.6 120528 168993 -
3830570 4040444 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AL773598.5 1 209875 +
4040445 4117780 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 CR933860.7 1 77336 -
4117781 4167780 42 N 50000 contig no
4167781 4236908 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 CR855206.9 80654 149781 -
4236909 4467626 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AL807381.6 1 230718 -
4467627 4618998 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 CR936976.15 1 151372 -
4618999 4685278 46 A LO018007.2 40959 107238 +
4685279 4735278 47 N 50000 contig no
4735279 4783390 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX890631.11 1 48112 +
4783391 4931712 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX072568.5 1 148322 +
4931713 5067245 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 CR385041.16 55901 191433 +
5067246 5117245 51 N 50000 contig no
5117246 5156173 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CU467856.6 1 38928 +
5156174 5356933 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL928872.7 1 200760 +
5356934 5424710 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL954698.9 1 67777 -
5424711 5474710 55 N 50000 contig no
5474711 5573330 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX005101.8 1 98620 +
5573331 5798467 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX255933.7 1 225137 -
5798468 5949026 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX546446.15 1 150559 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
13
Gap types
type-3
13
Total clones
43
Clone HTGS Phases
contiguous
1
finished
42
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,014,890
Total finished length of fin clones w/ overlap
7,123,875
Total finished length of fin clones w/o overlap
5,108,985
Total overlap length of fin+unfin clones
2,055,848
Total finished length of fin+unfin clones w/ overlap
7,231,113
Total finished length of fin+unfin clones w/o overlap
5,175,265

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