ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__1 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-142E15
alt_ctg1_2_1
zC142E15
AL929210.4
finished
2 CH211-12K18
alt_ctg1_2_1
zC12K18
CR753839.12
finished
3 DKEY-13D23
alt_ctg1_2_1
zK13D23
CR762406.12
finished
  GAP (type-3) length unknown    
5 CH211-152J23
alt_ctg1_2_2
zC152J23
BX511095.9
finished
6 DKEY-21O10
alt_ctg1_2_2
zK21O10
BX537295.7
finished
7 DKEY-16N16
alt_ctg1_2_2
zK16N16
BX000470.24
finished
8 CH211-142C4
alt_ctg1_2_2
zC142C4
CR381587.14
finished
  GAP (type-3) length unknown    
10 CH211-245D9
alt_ctg1_2_3
zC245D9
AL929044.17
finished
11 DKEY-253I9
alt_ctg1_2_3
zK253I9
CR762427.15
finished
  GAP (type-3) length unknown    
13 CH73-173K21
alt_ctg1_2_4
zH173K21
CU468286.4
finished
14 DKEYP-30A5
alt_ctg1_2_4
zKp30A5
CR376728.12
finished
15 CH73-357C10
alt_ctg1_2_4
zH357C10
CT827864.4
finished
  GAP (type-3) length unknown    
17 DKEY-285J13
alt_ctg1_2_5
zK285J13
CR388092.29
finished
18 CH211-263O4
alt_ctg1_2_5
zC263O4
BX537165.3
finished
19 CH211-103D12
alt_ctg1_2_5
zC103D12
AL928917.9
finished
20 CH211-240P12
alt_ctg1_2_5
zC240P12
CR376846.9
finished
  GAP (type-3) length unknown    
22 CH73-207I17
alt_ctg1_2_6
zH207I17
FP245458.6
finished
23 CH211-283K4
alt_ctg1_2_6
zC283K4
BX276182.13
finished
24 DKEY-92J12
alt_ctg1_2_6
zK92J12
BX908795.10
finished
  GAP (type-3) length unknown    
26 DKEYP-26A9
alt_ctg1_2_7
zKp26A9
CR391911.15
finished
27 DKEY-54K9
alt_ctg1_2_7
zK54K9
CR762426.15
finished
  GAP (type-3) length unknown    
29 DKEY-40H17
alt_ctg1_2_8
zK40H17
BX005068.13
finished
30 DKEY-148P7
alt_ctg1_2_8
zK148P7
BX005473.5
finished
31 DKEY-7E20
alt_ctg1_2_8
zK7E20
AL844514.12
finished
32 DKEY-73J8
alt_ctg1_2_8
zK73J8
BX511105.8
finished
33 CH211-242P18
alt_ctg1_2_8
zC242P18
AL954386.11
finished
34 DKEY-104E13
alt_ctg1_2_8
zK104E13
BX005016.8
finished
  GAP (type-3) length unknown    
36 DKEYP-9C8
alt_ctg1_2_9
zKp9C8
CR846097.4
finished
37 DKEY-13P3
alt_ctg1_2_9
zK13P3
BX649492.6
finished
38 DKEY-114F6
alt_ctg1_2_9
zK114F6
BX000462.10
finished
  GAP (type-3) length unknown    
40 DKEY-22O12
alt_ctg1_2_10
CONTAINER
zK22O12
CR382370.13
finished
41 CH211-150K4
alt_ctg1_2_10
CONTAINED
zC150K4
BX510343.8
finished
40 DKEY-22O12
alt_ctg1_2_10
CONTAINER
zK22O12
CR382370.13
finished
  GAP (type-3) length unknown    
43 DKEY-7M11
alt_ctg1_2_11
zK7M11
BX284697.8
finished
44 DKEY-115J2
alt_ctg1_2_11
zK115J2
CR931938.9
finished
45 ZFOS-1821A5
alt_ctg1_2_11
zF1821A5
FO818671.2
contiguous
  GAP (type-3) length unknown    
47 CH211-247C17
alt_ctg1_2_12
zC247C17
CR536615.10
finished
48 CH211-274J15
alt_ctg1_2_12
zC274J15
AL954670.11
finished
49 DKEY-24H22
alt_ctg1_2_12
CONTAINER
zK24H22
BX901972.12
finished
50 DKEYP-110H2
alt_ctg1_2_12
CONTAINED
zKp110H2
CR925787.5
finished
49 DKEY-24H22
alt_ctg1_2_12
CONTAINER
zK24H22
BX901972.12
finished
  GAP (type-3) length unknown    
52 DKEY-27H10
alt_ctg1_2_13
zK27H10
BX322570.4
finished
53 CH211-18G18
alt_ctg1_2_13
zC18G18
BX901953.5
finished
54 CH211-194G2
alt_ctg1_2_13
zC194G2
BX276105.6
finished
  GAP (type-3) length unknown    
56 CH211-188M17
alt_ctg1_2_14
zC188M17
AL929576.7
finished
57 CH211-154P6
alt_ctg1_2_14
zC154P6
CT030717.12
finished
58 CH211-164D19
alt_ctg1_2_14
zC164D19
BX511116.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 155652 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL929210.4 12732 168383 -
155653 324716 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR753839.12 1 169064 +
324717 429963 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR762406.12 35353 140599 +
429964 479963 4 N 50000 contig no
479964 627303 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX511095.9 1 147340 +
627304 792669 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX537295.7 1 165366 +
792670 1028478 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX000470.24 2001 237809 +
1028479 1161240 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR381587.14 1 132762 -
1161241 1211240 9 N 50000 contig no
1211241 1361635 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL929044.17 1 150395 +
1361636 1506844 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 CR762427.15 63795 209003 +
1506845 1556844 12 N 50000 contig no
1556845 1639777 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU468286.4 1 82933 +
1639778 1742914 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR376728.12 1 103137 -
1742915 1753739 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CT827864.4 84924 95748 +
1753740 1803739 16 N 50000 contig no
1803740 1916981 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR388092.29 48127 161368 -
1916982 2071876 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX537165.3 3452 158346 +
2071877 2246837 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AL928917.9 2001 176961 +
2246838 2390245 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR376846.9 1 143408 -
2390246 2440245 21 N 50000 contig no
2440246 2473184 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 FP245458.6 1 32939 +
2473185 2619077 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX276182.13 1 145893 +
2619078 2644351 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX908795.10 117195 142468 +
2644352 2694351 25 N 50000 contig no
2694352 2699368 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CR391911.15 189099 194115 -
2699369 2863825 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CR762426.15 1 164457 -
2863826 2913825 28 N 50000 contig no
2913826 3031625 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 BX005068.13 97208 215007 -
3031626 3126591 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 BX005473.5 1 94966 +
3126592 3352918 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 AL844514.12 1 226327 -
3352919 3505366 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 BX511105.8 2001 154448 +
3505367 3634925 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 AL954386.11 30701 160259 +
3634926 3781200 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 34 BX005016.8 2001 148275 +
3781201 3831200 35 N 50000 contig no
3831201 3853254 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 CR846097.4 31570 53623 -
3853255 4043098 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX649492.6 1 189844 -
4043099 4052798 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX000462.10 157972 167671 +
4052799 4102798 39 N 50000 contig no
4102799 4149753 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 CR382370.13 1 46955 +
4149754 4305034 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 BX510343.8 1 155281 +
4305035 4364553 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 CR382370.13 197986 257504 +
4364554 4414553 43 N 50000 contig no
4414554 4535371 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 BX284697.8 89129 209946 -
4535372 4615477 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 CR931938.9 1308 81413 +
4615478 4648788 46 A FO818671.2 1 33311 -
4648789 4698788 47 N 50000 contig no
4698789 4841042 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 52 CR536615.10 1 142254 +
4841043 4978633 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 52 AL954670.11 11175 148765 +
4978634 4980635 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 52 BX901972.12 142179 144180 -
4980636 5070321 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 52 CR925787.5 1 89686 +
5070322 5112839 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 52 BX901972.12 1 42518 -
5112840 5162839 53 N 50000 contig no
5162840 5247846 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX322570.4 1 85007 +
5247847 5414450 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX901953.5 1 166604 -
5414451 5560558 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX276105.6 63379 209486 +
5560559 5610558 57 N 50000 contig no
5610559 5751311 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 AL929576.7 1 140753 +
5751312 5923004 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 CT030717.12 1 171693 +
5923005 5940528 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 BX511116.4 34874 52397 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
13
Gap types
type-3
13
Total clones
45
Clone HTGS Phases
contiguous
1
finished
44
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,730,877
Total finished length of fin clones w/ overlap
6,901,628
Total finished length of fin clones w/o overlap
5,170,751
Total overlap length of fin+unfin clones
1,737,276
Total finished length of fin+unfin clones w/ overlap
6,936,687
Total finished length of fin+unfin clones w/o overlap
5,199,411

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