ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__3 (TPF updated: 2017-11-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-18I3
alt_ctg3_2_1
zC18I3
EPN details
BX000701.25
finished
2 CH211-134G21
alt_ctg3_2_1
zC134G21
EPN details
BX323888.8
finished
3 CH211-271N3
alt_ctg3_2_1
zC271N3
EPN details
AL935284.13
finished
  GAP (type-3) length unknown    
5 DKEY-110G7
alt_ctg3_2_2
zK110G7
EPN details
CR812472.9
finished
6 CH211-261F22
alt_ctg3_2_2
zC261F22
EPN details
AL837515.9
finished
7 CH211-260M3
alt_ctg3_2_2
zC260M3
EPN details
CR790377.18
finished
  GAP (type-3) length unknown    
9 DKEY-16L2
alt_ctg3_2_3
zK16L2
EPN details
BX571714.7
finished
10 CH211-129K16
alt_ctg3_2_3
zC129K16
EPN details
BX005142.4
finished
11 DKEY-215O18
alt_ctg3_2_3
zK215O18
EPN details
BX649211.10
finished
12 DKEY-242N9
alt_ctg3_2_3
zK242N9
EPN details
CR392003.9
finished
  GAP (type-3) length unknown    
14 CH211-114M9
alt_ctg3_2_4
zC114M9
EPN details
BX682551.5
finished
15 DKEY-66M24
alt_ctg3_2_4
zK66M24
EPN details
AL935265.4
finished
16 DKEY-62J22
alt_ctg3_2_4
zK62J22
EPN details
BX769173.6
finished
  GAP (type-3) length unknown    
18 CH211-191C10
alt_ctg3_2_5
zC191C10
EPN details
BX936302.13
finished
19 DKEY-87M9
alt_ctg3_2_5
zK87M9
EPN details
CR352221.10
finished
20 CH211-241F5
alt_ctg3_2_5
Cl/Pr zC241F5/zC238G2 swap
EPN details
BX511096.7
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 19266 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX000701.25 1 19266 +
19267 194668 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX323888.8 1 175402 -
194669 364224 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935284.13 2001 171556 +
364225 414224 4 N 50000 contig no
414225 472099 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR812472.9 1 57875 +
472100 620815 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL837515.9 1 148716 -
620816 762168 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR790377.18 1 141353 -
762169 812168 8 N 50000 contig no
812169 965239 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX571714.7 87035 240105 -
965240 1135439 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX005142.4 1 170200 -
1135440 1259431 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX649211.10 1 123992 -
1259432 1372779 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR392003.9 1 113348 -
1372780 1422779 13 N 50000 contig no
1422780 1561527 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX682551.5 28480 167227 -
1561528 1758664 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 AL935265.4 1 197137 +
1758665 1845392 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX769173.6 1 86728 -
1845393 1895392 17 N 50000 contig no
1895393 1930039 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX936302.13 44403 79049 -
1930040 2113615 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CR352221.10 1 183576 -
2113616 2118649 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX511096.7 1 5034 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-18I3
alt_ctg3_2_1
zC18I3
-
-
BX000701.25
finished
181568 CHORI-211 3' / 3'
19266 / 175402
- / -
165507
0
Identified
2017-04-18
agp2oracle
humpub
 
2 CH211-134G21
alt_ctg3_2_1
zC134G21
-
-
BX323888.8
finished
178607 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-271N3
alt_ctg3_2_1
zC271N3
-
-
AL935284.13
finished
171556 CHORI-211        
  GAP (type-3) length unknown                  
5 DKEY-110G7
alt_ctg3_2_2
zK110G7
-
-
CR812472.9
finished
194804 DanioKey 3' / 3'
57875 / 148716
- / -
142193
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-261F22
alt_ctg3_2_2
zC261F22
-
-
AL837515.9
finished
153980 CHORI-211 5' / 3'
1 / 141353
- / -
6237
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH211-260M3
alt_ctg3_2_2
zC260M3
-
-
CR790377.18
finished
147590 CHORI-211        
  GAP (type-3) length unknown                  
9 DKEY-16L2
alt_ctg3_2_3
zK16L2
-
-
BX571714.7
finished
240105 DanioKey 5' / 3'
87035 / 170200
- / -
87034
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-129K16
alt_ctg3_2_3
zC129K16
-
-
BX005142.4
finished
170200 CHORI-211 5' / 3'
1 / 123992
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-215O18
alt_ctg3_2_3
zK215O18
-
-
BX649211.10
finished
125992 DanioKey 5' / 3'
1 / 113348
- / -
68695
0
Identified
2017-03-07
agp2oracle
humpub
 
12 DKEY-242N9
alt_ctg3_2_3
zK242N9
-
-
CR392003.9
finished
182043 DanioKey        
  GAP (type-3) length unknown                  
14 CH211-114M9
alt_ctg3_2_4
zC114M9
-
-
BX682551.5
finished
167227 CHORI-211 5' / 5'
28480 / 1
- / -
28479
0
Identified
2017-03-07
agp2oracle
humpub
 
15 DKEY-66M24
alt_ctg3_2_4
zK66M24
-
-
AL935265.4
finished
197137 DanioKey 3' / 3'
197137 / 86728
- / -
107861
0
Identified
2017-03-07
agp2oracle
humpub
 
16 DKEY-62J22
alt_ctg3_2_4
zK62J22
-
-
BX769173.6
finished
194589 DanioKey        
  GAP (type-3) length unknown                  
18 CH211-191C10
alt_ctg3_2_5
zC191C10
-
-
BX936302.13
finished
79049 CHORI-211 5' / 3'
44403 / 183576
- / -
44415
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEY-87M9
alt_ctg3_2_5
zK87M9
-
-
CR352221.10
finished
183589 DanioKey 5' / 3'
1 / 5034
- / -
139364
0
Identified
2017-03-07
agp2oracle
humpub
 
20 CH211-241F5
alt_ctg3_2_5
zC241F5
-
-
BX511096.7
finished
144398 CHORI-211        

Statistics

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Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
16
Clone HTGS Phases
finished
16
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
774,986
Total finished length of fin clones w/ overlap
2,712,434
Total finished length of fin clones w/o overlap
1,937,448
Total overlap length of fin+unfin clones
774,986
Total finished length of fin+unfin clones w/ overlap
2,712,434
Total finished length of fin+unfin clones w/o overlap
1,937,448

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