ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__10 (TPF updated: 2017-11-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH73-234B20
alt_ctg10_2_1
zH234B20
CU074419.13
finished
2 CH211-138M21
alt_ctg10_2_1
zC138M21
CR352251.11
finished
  GAP (type-3) length unknown    
4 DKEYP-66D7
alt_ctg10_2_2
zKp66D7
CR450836.14
finished
5 DKEY-88J18
alt_ctg10_2_2
zK88J18
CR555296.6
finished
6 DKEY-159K22
alt_ctg10_2_2
zK159K22
CR381599.11
finished
  GAP (type-3) length unknown    
8 DKEY-5G14
alt_ctg10_2_3
CONTAINER
zK5G14
CT027781.7
finished
9 CH211-145A11
alt_ctg10_2_3
CONTAINED
zC145A11
BX323039.6
finished
8 DKEY-5G14
alt_ctg10_2_3
CONTAINER
zK5G14
CT027781.7
finished
  GAP (type-3) length unknown    
11 DKEY-88P24
alt_ctg10_2_4
zK88P24
BX248510.4
finished
12 CH211-103D22
alt_ctg10_2_4
zC103D22
AL732562.8
finished
13 DKEY-30E1
alt_ctg10_2_4
zK30E1
CR847960.14
finished
14 DKEY-156L9
alt_ctg10_2_4
zK156L9
AL844197.7
finished
  GAP (type-3) length unknown    
16 CH211-55I2
alt_ctg10_2_5
zC55I2
CR381694.8
finished
17 CH211-154C10
alt_ctg10_2_5
zC154C10
CR762467.7
finished
18 DKEY-222J15
alt_ctg10_2_5
zK222J15
BX005366.19
finished
  GAP (type-3) length unknown    
20 DKEY-189I22
alt_ctg10_2_6
zK189I22
CR394538.6
finished
21 CH211-160F13
alt_ctg10_2_6
zC160F13
CR626961.6
finished
22 DKEYP-10A10
alt_ctg10_2_6
zKp10A10
CR555290.8
finished
  GAP (type-3) length unknown    
24 CH211-215A9
alt_ctg10_2_7
CONTAINER
zC215A9
BX088524.16
finished
25 CH211-120G21
alt_ctg10_2_7
CONTAINED
zC120G21
AL845438.21
finished
24 CH211-215A9
alt_ctg10_2_7
CONTAINER
zC215A9
BX088524.16
finished
  GAP (type-3) length unknown    
27 DKEY-96F1
alt_ctg10_2_8
zK96F1
CR931806.15
finished
28 DKEY-147H15
alt_ctg10_2_8
zK147H15
BX000353.8
finished
29 CH211-55A7
alt_ctg10_2_8
zC55A7
AL929310.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 37553 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU074419.13 1 37553 +
37554 213400 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR352251.11 1 175847 +
213401 263400 3 N 50000 contig no
263401 320306 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CR450836.14 72515 129420 -
320307 518577 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CR555296.6 1 198271 +
518578 535197 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CR381599.11 124132 140751 +
535198 585197 7 N 50000 contig no
585198 598407 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 CT027781.7 1 13210 +
598408 749179 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 BX323039.6 1 150772 -
749180 749775 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 CT027781.7 171124 171719 +
749776 799775 11 N 50000 contig no
799776 968161 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 15 BX248510.4 31592 199977 -
968162 1155526 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 15 AL732562.8 1 187365 +
1155527 1370181 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 15 CR847960.14 2001 216655 +
1370182 1374104 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 15 AL844197.7 1 3923 -
1374105 1424104 16 N 50000 contig no
1424105 1600840 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR381694.8 2001 178736 -
1600841 1709312 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR762467.7 1 108472 +
1709313 1713550 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX005366.19 128227 132464 +
1713551 1763550 20 N 50000 contig no
1763551 1787285 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR394538.6 131660 155394 -
1787286 1954514 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR626961.6 1 167229 +
1954515 2013570 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR555290.8 24513 83568 +
2013571 2063570 24 N 50000 contig no
2063571 2115665 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX088524.16 176530 228624 -
2115666 2290686 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL845438.21 1 175021 -
2290687 2313975 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX088524.16 1 23289 -
2313976 2363975 28 N 50000 contig no
2363976 2504280 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR931806.15 1 140305 +
2504281 2693320 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 BX000353.8 1 189040 -
2693321 2751810 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AL929310.9 1 58490 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,175,203
Total finished length of fin clones w/ overlap
3,524,360
Total finished length of fin clones w/o overlap
2,349,157
Total overlap length of fin+unfin clones
1,175,203
Total finished length of fin+unfin clones w/ overlap
3,524,360
Total finished length of fin+unfin clones w/o overlap
2,349,157

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