ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__13 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-250C4
alt_ctg13_2_1
zC250C4
AL935288.9
finished
2 CH211-160I12
alt_ctg13_2_1
zC160I12
AL935298.5
finished
3 CH211-243F3
alt_ctg13_2_1
zC243F3
BX248102.11
finished
  GAP (type-3) length unknown    
5 CH211-93N23
alt_ctg13_2_2
zC93N23
BX004962.10
finished
6 CH211-193J5
alt_ctg13_2_2
zC193J5
CR352233.9
finished
7 CH73-105B23
alt_ctg13_2_2
zH105B23
CU570977.8
finished
  GAP (type-3) length unknown    
9 CH211-233A24
alt_ctg13_2_3
zC233A24
CT573111.9
finished
10 RP71-77D7
alt_ctg13_2_3
bZ77D7
BX119973.7
finished
11 DKEY-32H6
alt_ctg13_2_3
zK32H6
CR762461.7
finished
12 DKEY-181A13
alt_ctg13_2_3
zK181A13
CR559942.5
finished
  GAP (type-3) length unknown    
14 CH211-155K1
alt_ctg13_2_4
zC155K1
AL929492.6
finished
15 DKEY-170I22
alt_ctg13_2_4
zK170I22
CT025874.7
finished
  GAP (type-3) length unknown    
17 CH211-1N9
alt_ctg13_2_5
zC1N9
BX530068.35
finished
18 CH211-180B2
alt_ctg13_2_5
zC180B2
AL935136.4
finished
19 DKEY-226B20
alt_ctg13_2_5
zK226B20
BX546482.15
finished
  GAP (type-3) length unknown    
21 CH211-62A1
alt_ctg13_2_6
zC62A1
BX914200.14
finished
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
BX936305.18
finished
23 DKEY-175H14
alt_ctg13_2_6
CONTAINED
zK175H14
BX914217.19
finished
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
BX936305.18
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 94206 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935288.9 1 94206 +
94207 250117 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935298.5 1 155911 +
250118 338818 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248102.11 1 88701 -
338819 388818 4 N 50000 contig no
388819 492455 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004962.10 67100 170736 -
492456 634915 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR352233.9 7440 149899 +
634916 713583 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU570977.8 35447 114114 +
713584 763583 8 N 50000 contig no
763584 783472 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT573111.9 1 19889 +
783473 965539 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX119973.7 1 182067 -
965540 1049950 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR762461.7 1 84411 -
1049951 1061137 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR559942.5 1 11187 -
1061138 1111137 13 N 50000 contig no
1111138 1268199 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AL929492.6 1 157062 -
1268200 1355510 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 CT025874.7 1 87311 -
1355511 1405510 16 N 50000 contig no
1405511 1563903 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX530068.35 1 158393 +
1563904 1710615 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL935136.4 1 146712 +
1710616 1783418 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX546482.15 134147 206949 +
1783419 1833418 20 N 50000 contig no
1833419 2003601 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX914200.14 1 170183 +
2003602 2003602 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX936305.18 144914 144914 -
2003603 2137583 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX914217.19 1 133981 +
2137584 2140747 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX936305.18 1 3164 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
655,546
Total finished length of fin clones w/ overlap
2,543,129
Total finished length of fin clones w/o overlap
1,887,583
Total overlap length of fin+unfin clones
655,546
Total finished length of fin+unfin clones w/ overlap
2,543,129
Total finished length of fin+unfin clones w/o overlap
1,887,583

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