ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_PGF (TPF updated: 2010-04-07)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH501-308K3
Chr_6mhc501ctg1
bPG308K3
AL662890.3
finished
2 CH501-322C17
Chr_6mhc501ctg1
bPG322C17
AL662871.9
finished
3 CH501-258E24
Chr_6mhc501ctg1
bPG258E24
AL662791.3
finished
4 CH501-171B11
Chr_6mhc501ctg1
bPG171B11
AL645937.6
finished
5 CH501-308J9
Chr_6mhc501ctg1
bPG308J9
AL672167.6
finished
6 CH501-1H2
Chr_6mhc501ctg1
bPG1H2
AL662781.4
finished
7 CH501-13B8
Chr_6mhc501ctg1
bPG13B8
AL645927.3
finished
8 CH501-158F21
Chr_6mhc501ctg1
bPG158F21
AL662860.3
finished
9 CH501-126D10
Chr_6mhc501ctg1
bPG126D10
AL645936.5
finished
10 CH501-170G13
Chr_6mhc501ctg1
bPG170G13
AL645939.6
finished
11 CH501-12I6
Chr_6mhc501ctg1
bPG12I6
AL645929.4
finished
12 CH501-8G10
Chr_6mhc501ctg1
bPG8G10
AL928614.3
finished
13 CH501-309N1
Chr_6mhc501ctg1
bPG309N1
AL671277.5
finished
14 CH501-250I8
Chr_6mhc501ctg1
bPG250I8
AL669914.2
finished
15 CH501-254M11
Chr_6mhc501ctg1
bPG254M11
AL671855.4
finished
16 CH501-252N6
Chr_6mhc501ctg1
bPG252N6
AL662782.3
finished
17 CH501-283O16
Chr_6mhc501ctg1
bPG283O16
AL662795.5
finished
18 CH501-139A1
Chr_6mhc501ctg1
bPG139A1
AL845555.1
finished
19 CH501-34K20
Chr_6mhc501ctg1
bPG34K20
AL662873.3
finished
20 CH501-249D20
Chr_6mhc501ctg1
bPG249D20
AL662800.4
finished
21 CH501-27H4
Chr_6mhc501ctg1
bPG27H4
AL662798.4
finished
22 CH501-252P9
Chr_6mhc501ctg1
bPG252P9
AL662797.7
finished
23 CH501-70P20
Chr_6mhc501ctg1
bPG70P20
AL662870.16
finished
24 CH501-118E17
Chr_6mhc501ctg1
bPG118E17
AL669830.9
finished
25 CH501-299F13
Chr_6mhc501ctg1
bPG299F13
AL662844.12
finished
26 CH501-250J14
Chr_6mhc501ctg1
bPG250J14
AL662850.4
finished
27 CH501-248L24
Chr_6mhc501ctg1
bPG248L24
AL671883.3
finished
28 CH501-181B23
Chr_6mhc501ctg1
bPG181B23
AL645933.8
finished
29 CH501-16N22
Chr_6mhc501ctg1
bPG16N22
AL663061.8
finished
30 CH501-296P20
Chr_6mhc501ctg1
bPG296P20
AL662801.7
finished
31 CH501-32J3
Chr_6mhc501ctg1
bPG32J3
AL662899.5
finished
32 CH501-254B15
Chr_6mhc501ctg1
bPG254B15
AL671762.10
finished
33 CH501-116M5
Chr_6mhc501ctg1
bPG116M5
AL645922.12
finished
34 CH501-15K13
Chr_6mhc501ctg1
bPG15K13
AL772248.5
finished
35 CH501-300A18
Chr_6mhc501ctg1
bPG300A18
AL662884.11
finished
36 CH501-7F7
Chr_6mhc501ctg1
bPG7F7
AL772153.2
finished
37 CH501-154L12
Chr_6mhc501ctg1
bPG154L12
AL671511.4
finished
38 CH501-290C9
Chr_6mhc501ctg1
bPG290C9
AL662796.6
finished
39 CH501-495H8
Chr_6mhc501ctg1
bPG495H8
AL845554.2
finished
40 CH501-161M6
Chr_6mhc501ctg1
bPG161M6
AL713966.7
finished
41 CH501-254F23
Chr_6mhc501ctg1
bPG254F23
AL662789.11
finished
42 CH501-226C15
Chr_6mhc501ctg1
bPG226C15
AL732440.2
finished
43 CH501-3L13
Chr_6mhc501ctg1
bPG3L13
AL672104.4
finished
44 CH501-246D15
Chr_6mhc501ctg1
bPG246D15
AL669918.5
finished
45 CH501-181M17
Chr_6mhc501ctg1
bPG181M17
AL645941.11
finished
46 CH501-138A21
Chr_6mhc501ctg1
bPG138A21
AL645931.7
finished
47 CH501-157A10
Chr_6mhc501ctg1
bPG157A10
AL645940.4
finished
48 CH501-185D15
Chr_6mhc501ctg1
bPG185D15
AL662820.6
finished
49 CH501-294E21
Chr_6mhc501ctg1
bPG294E21
AL662799.16
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137288 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662890.3 1 137288 +
137289 238446 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662871.9 2001 103158 +
238447 370909 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662791.3 2001 134463 +
370910 516577 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645937.6 2000 147667 +
516578 559281 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL672167.6 2001 44704 +
559282 663923 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662781.4 2001 106642 +
663924 774501 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645927.3 2001 112578 +
774502 822195 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662860.3 2001 49694 +
822196 976066 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645936.5 2004 155874 +
976067 1097834 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645939.6 2001 123768 +
1097835 1176496 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645929.4 2001 80662 +
1176497 1195718 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL928614.3 2001 21222 +
1195719 1278545 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL671277.5 2001 84827 +
1278546 1435723 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL669914.2 2001 159178 +
1435724 1479369 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL671855.4 2001 45646 +
1479370 1539825 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662782.3 2001 62456 +
1539826 1652929 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662795.5 2001 115104 +
1652930 1667208 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL845555.1 2001 16279 +
1667209 1773003 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662873.3 2001 107795 +
1773004 1922231 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662800.4 2001 151228 +
1922232 1950093 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662798.4 2001 29862 +
1950094 2119720 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662797.7 2001 171627 +
2119721 2179418 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662870.16 2001 61698 +
2179419 2333690 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL669830.9 2001 156272 +
2333691 2535988 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662844.12 2001 204298 +
2535989 2537982 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662850.4 2001 3994 +
2537983 2656179 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL671883.3 2001 120197 +
2656180 2765507 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645933.8 2001 111328 +
2765508 2800507 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL663061.8 2001 37000 +
2800508 2930837 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662801.7 2001 132330 +
2930838 3065330 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662899.5 2001 136493 +
3065331 3176912 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL671762.10 2001 113582 +
3176913 3355472 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645922.12 2001 180560 +
3355473 3360351 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL772248.5 2001 6879 +
3360352 3496286 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662884.11 2001 137935 +
3496287 3512514 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL772153.2 2001 18228 +
3512515 3597808 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL671511.4 2001 87294 +
3597809 3725910 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662796.6 2001 130102 +
3725911 3739237 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL845554.2 2001 15327 +
3739238 3861284 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL713966.7 2001 124047 +
3861285 4006841 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662789.11 2001 147557 +
4006842 4008835 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL732440.2 2001 3994 +
4008836 4070753 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL672104.4 2001 63918 +
4070754 4195741 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL669918.5 2001 126988 +
4195742 4265242 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645941.11 2001 71501 +
4265243 4388141 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645931.7 2001 124899 +
4388142 4544174 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL645940.4 2001 158033 +
4544175 4620809 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662820.6 2001 78635 +
4620810 4754830 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 49 AL662799.16 2001 136021 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
49
Clone HTGS Phases
finished
49
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
95,999
Total finished length of fin clones w/ overlap
4,850,832
Total finished length of fin clones w/o overlap
4,754,833
Total overlap length of fin+unfin clones
95,999
Total finished length of fin+unfin clones w/ overlap
4,850,832
Total finished length of fin+unfin clones w/o overlap
4,754,833

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Other links

* quick link - http://q.sanger.ac.uk/3x2olxqv