ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__14 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEYP-86F7
alt_ctg14_2_1
zKp86F7
CR293501.10
finished
2 DKEYP-35F9
alt_ctg14_2_1
zKp35F9
BX284636.7
finished
3 DKEY-10O22
alt_ctg14_2_1
zK10O22
BX957231.6
finished
  GAP (type-3) length unknown    
5 DKEY-92I17
alt_ctg14_2_2
zK92I17
CR931764.18
finished
6 CH211-160E19
alt_ctg14_2_2
zC160E19
BX005453.13
finished
7 DKEY-65A17
alt_ctg14_2_2
zK65A17
CR855117.11
finished
  GAP (type-3) length unknown    
9 CH211-207L13
alt_ctg14_2_3
zC207L13
AL953884.15
finished
10 DKEY-12J12
alt_ctg14_2_3
zK12J12
BX000452.7
finished
11 CH211-235I6
alt_ctg14_2_3
zC235I6
AL935310.8
finished
  GAP (type-3) length unknown    
13 CH211-143O2
alt_ctg14_2_4
zC143O2
CT956101.9
finished
14 DKEY-18A21
alt_ctg14_2_4
zK18A21
BX530085.3
finished
15 CH211-20F11
alt_ctg14_2_4
zC20F11
CU179640.8
finished
  GAP (type-3) length unknown    
17 CH211-51H20
alt_ctg14_2_5
zC51H20
AL928691.7
finished
18 DKEY-61N7
alt_ctg14_2_5
zK61N7
BX537152.15
finished
19 DKEY-282E7
alt_ctg14_2_5
zK282E7
CU074314.7
finished
  GAP (type-3) length unknown    
21 CH73-335M24
alt_ctg14_2_6
zH335M24
FP016208.12
finished
22 DKEY-14M2
alt_ctg14_2_6
zK14M2
BX088721.5
finished
23 CH211-207B20
alt_ctg14_2_6
zC207B20
BX537115.11
finished
  GAP (type-3) length unknown    
25 CH211-232M8
alt_ctg14_2_7
zC232M8
BX248097.7
finished
26 CH211-20H7
alt_ctg14_2_7
zC20H7
BX927364.4
finished
27 DKEY-192O1
alt_ctg14_2_7
zK192O1
CU151895.6
finished
  GAP (type-3) length unknown    
29 CH211-203D1
alt_ctg14_2_8
zC203D1
CR847496.7
finished
30 DKEY-3G23
alt_ctg14_2_8
zK3G23
CR383665.9
finished
31 DKEY-37G16
alt_ctg14_2_8
zK37G16
CR456621.10
finished
  GAP (type-3) length unknown    
33 DKEY-148N20
alt_ctg14_2_9
zK148N20
BX663611.13
finished
34 CH211-182O16
alt_ctg14_2_9
zC182O16
CU151882.5
finished
35 CH211-237H22
alt_ctg14_2_9
zC237H22
CR318607.7
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 160756 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR293501.10 42950 203705 -
160757 332041 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX284636.7 1 171285 -
332042 334510 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX957231.6 1 2469 -
334511 384510 4 N 50000 contig no
384511 400480 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR931764.18 1 15970 +
400481 586021 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX005453.13 1 185541 -
586022 750608 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR855117.11 6522 171108 +
750609 800608 8 N 50000 contig no
800609 832835 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL953884.15 168889 201115 -
832836 1053255 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX000452.7 1 220420 +
1053256 1099934 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935310.8 1 46679 -
1099935 1149934 12 N 50000 contig no
1149935 1305025 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CT956101.9 1 155091 +
1305026 1499432 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX530085.3 1 194407 +
1499433 1658177 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU179640.8 203 158947 +
1658178 1708177 16 N 50000 contig no
1708178 1789591 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL928691.7 1 81414 +
1789592 2033320 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX537152.15 1 243729 -
2033321 2048574 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CU074314.7 1 15254 -
2048575 2098574 20 N 50000 contig no
2098575 2138222 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 FP016208.12 1 39648 +
2138223 2369276 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX088721.5 1 231054 +
2369277 2559607 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX537115.11 1 190331 -
2559608 2609607 24 N 50000 contig no
2609608 2778940 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX248097.7 1 169333 +
2778941 2873102 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX927364.4 1 94162 +
2873103 2902339 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CU151895.6 99518 128754 +
2902340 2952339 28 N 50000 contig no
2952340 3051291 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR847496.7 1 98952 +
3051292 3161538 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR383665.9 1 110247 -
3161539 3296696 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR456621.10 1 135158 -
3296697 3346696 32 N 50000 contig no
3346697 3514182 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX663611.13 45646 213131 -
3514183 3642763 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CU151882.5 1 128581 +
3642764 3679638 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR318607.7 1 36875 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
8
Gap types
type-3
8
Total clones
27
Clone HTGS Phases
finished
27
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,273,127
Total finished length of fin clones w/ overlap
4,552,765
Total finished length of fin clones w/o overlap
3,279,638
Total overlap length of fin+unfin clones
1,273,127
Total finished length of fin+unfin clones w/ overlap
4,552,765
Total finished length of fin+unfin clones w/o overlap
3,279,638

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