ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__16 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-197A20
alt_ctg16_2_1
zK197A20
CT027619.10
finished
2 DKEY-13H9
alt_ctg16_2_1
zK13H9
BX001019.7
finished
3 DKEY-26C10
alt_ctg16_2_1
zK26C10
CR388102.8
finished
  GAP (type-3) length unknown    
5 CH73-382H2
alt_ctg16_2_2
zH382H2
FP102086.5
finished
6 CH211-207C13
alt_ctg16_2_2
zC207C13
BX324145.12
finished
7 CH211-257P13
alt_ctg16_2_2
zC257P13
CR848667.24
finished
  GAP (type-3) length unknown    
9 DKEY-15O4
alt_ctg16_2_3
zK15O4
AL954832.12
finished
10 CH211-216G8
alt_ctg16_2_3
zC216G8
CR352231.8
finished
11 DKEY-153L11
alt_ctg16_2_3
zK153L11
CR352245.9
finished
12 CH211-232M19
alt_ctg16_2_3
zC232M19
BX530064.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 79151 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT027619.10 1 79151 +
79152 304126 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX001019.7 1297 226271 +
304127 367630 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388102.8 131099 194602 +
367631 417630 4 N 50000 contig no
417631 425061 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 FP102086.5 1 7431 +
425062 505341 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX324145.12 1 80280 +
505342 608793 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR848667.24 1 103452 -
608794 658793 8 N 50000 contig no
658794 840572 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 AL954832.12 74348 256126 -
840573 1043258 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR352231.8 1 202686 -
1043259 1178161 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR352245.9 1 134903 -
1178162 1293478 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX530064.9 27113 142429 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
10
Clone HTGS Phases
finished
10
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
544,670
Total finished length of fin clones w/ overlap
1,738,148
Total finished length of fin clones w/o overlap
1,193,478
Total overlap length of fin+unfin clones
544,670
Total finished length of fin+unfin clones w/ overlap
1,738,148
Total finished length of fin+unfin clones w/o overlap
1,193,478

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