ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__20 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1
alt_ctg20_1_1
CABZ01027815
CABZ01027815.1
finished
2 DKEY-8O19
alt_ctg20_1_1
zK8O19
BX545848.23
finished
3 CH211-257G8
alt_ctg20_1_1
zC257G8
BX248523.8
finished
  GAP (type-3) length unknown    
5 CH211-39I19
alt_ctg20_1_2
zC39I19
CT583652.10
finished
6 CH211-191A24
alt_ctg20_1_2
zC191A24
BX571842.14
finished
7 CH73-180C7
alt_ctg20_1_2
zH180C7
CU914153.7
finished
  GAP (type-3) length unknown    
9 CH211-1D8
alt_ctg20_1_3
zC1D8
CR848811.12
finished
10 DKEY-227G5
alt_ctg20_1_3
zK227G5
CT583675.10
finished
11 DKEY-25C4
alt_ctg20_1_3
zK25C4
CR388209.17
finished
  GAP (type-3) length unknown    
13 CH211-13N20
alt_ctg20_1_4
zC13N20
BX284679.5
finished
14 DKEY-29M11
alt_ctg20_1_4
zK29M11
BX936454.25
finished
15 RP71-1C22
alt_ctg20_1_4
bZ1C22
AL645822.24
finished
  GAP (type-3) length unknown    
17 CH211-207D24
alt_ctg20_1_5
CONTAINER
zC207D24
AL929349.10
finished
18 CH211-180L14
alt_ctg20_1_5
CONTAINED
zC180L14
CR407560.11
finished
17 CH211-207D24
alt_ctg20_1_5
CONTAINER
zC207D24
AL929349.10
finished
  GAP (type-3) length unknown    
20 CH211-191D7
alt_ctg20_1_6
zC191D7
BX255937.13
finished
21 CH211-246K22
alt_ctg20_1_6
zC246K22
BX548055.7
finished
  GAP (type-3) length unknown    
23 CH211-214H24
alt_ctg20_1_7
zC214H24
CR759874.20
finished
24 DKEYP-117E6
alt_ctg20_1_7
zKp117E6
BX294662.13
finished
  GAP (type-3) length unknown    
26 DKEYP-90F5
alt_ctg20_1_8
zKp90F5
BX890573.6
finished
27 DKEY-100H21
alt_ctg20_1_8
CONTAINER
zK100H21
BX248118.10
finished
28 CH211-279A3
alt_ctg20_1_8
CONTAINED
zC279A3
BX470256.11
finished
27 DKEY-100H21
alt_ctg20_1_8
CONTAINER
zK100H21
BX248118.10
finished
  GAP (type-3) length unknown    
30 DKEY-11B8
alt_ctg20_1_9
zK11B8
BX255905.4
finished
31 DKEYP-47D4
alt_ctg20_1_9
zKp47D4
BX321888.21
finished
32 DKEY-219E20
alt_ctg20_1_9
zK219E20
BX296516.3
finished
  GAP (type-3) length unknown    
34 DKEY-77P13
alt_ctg20_1_10
zK77P13
BX248104.5
finished
35 CH211-194O4
alt_ctg20_1_10
zC194O4
BX784034.8
finished
36 DKEY-5P1
alt_ctg20_1_10
zK5P1
BX004766.9
finished
  GAP (type-3) length unknown    
38 DKEY-97C6
alt_ctg20_1_11
zK97C6
BX276097.13
finished
39 DKEY-43A16
alt_ctg20_1_11
zK43A16
CT583724.9
finished
40 DKEY-12H2
alt_ctg20_1_11
zK12H2
BX649298.7
finished
  GAP (type-3) length unknown    
42 DKEY-161N17
alt_ctg20_1_12
zK161N17
BX511028.13
finished
43 RP71-41I21
alt_ctg20_1_12
bZ41I21
BX321868.13
finished
  GAP (type-3) length unknown    
45 DKEY-23K6
alt_ctg20_1_13
CONTAINER
zK23K6
AL928716.15
finished
46 CH211-185K2
alt_ctg20_1_13
CONTAINED
zC185K2
AL935049.19
finished
45 DKEY-23K6
alt_ctg20_1_13
CONTAINER
zK23K6
AL928716.15
finished
  GAP (type-3) length unknown    
48 DKEYP-119B4
alt_ctg20_1_14
zKp119B4
BX530723.8
finished
49 CH211-193L17
alt_ctg20_1_14
zC193L17
BX682549.8
finished
50 DKEY-266K12
alt_ctg20_1_14
zK266K12
BX323010.9
finished
  GAP (type-3) length unknown    
52 DKEY-12H9
alt_ctg20_1_15
zK12H9
AL954831.17
finished
53 CH211-147O6
alt_ctg20_1_15
zC147O6
BX936462.20
finished
54 DKEY-147L14
alt_ctg20_1_15
zK147L14
CR926887.9
finished
55 DKEY-25E12
alt_ctg20_1_15
CONTAINER
zK25E12
BX537272.5
finished
56 CH211-266I18
alt_ctg20_1_15
CONTAINED
zC266I18
BX927255.9
finished
55 DKEY-25E12
alt_ctg20_1_15
CONTAINER
zK25E12
BX537272.5
finished
  GAP (type-3) length unknown    
58 DKEY-1H6
alt_ctg20_1_16
zK1H6
BX255917.3
finished
59 CH211-146N9
alt_ctg20_1_16
zC146N9
AL928790.4
finished
60 DKEY-263B2
alt_ctg20_1_16
zK263B2
BX255897.3
finished
  GAP (type-3) length unknown    
62 CH211-213I16
alt_ctg20_1_18
zC213I16
AL929237.18
finished
63 CH211-119A17
alt_ctg20_1_18
zC119A17
BX072572.8
finished
64 DKEY-7C18
alt_ctg20_1_18
zK7C18
AL929507.37
finished
  GAP (type-3) length unknown    
66 CH211-119B12
alt_ctg20_1_19
zC119B12
BX957286.14
finished
67 DKEY-89C16
alt_ctg20_1_19
zK89C16
CR855367.8
finished
68 DKEY-199I12
alt_ctg20_1_19
zK199I12
BX936455.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 13795 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CABZ01027815.1 1 13795 +
13796 213781 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX545848.23 1 199986 -
213782 214249 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248523.8 169382 169849 +
214250 264249 4 N 50000 contig no
264250 435901 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CT583652.10 1 171652 +
435902 442221 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX571842.14 1 6320 -
442222 455252 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU914153.7 1 13031 -
455253 505252 8 N 50000 contig no
505253 575489 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR848811.12 1 70237 +
575490 743565 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CT583675.10 1 168076 +
743566 881620 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR388209.17 85993 224047 +
881621 931620 12 N 50000 contig no
931621 964156 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX284679.5 1 32536 +
964157 1162452 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX936454.25 1 198296 +
1162453 1340195 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL645822.24 1 177743 -
1340196 1390195 16 N 50000 contig no
1390196 1456462 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL929349.10 130105 196371 -
1456463 1583591 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR407560.11 1 127129 -
1583592 1589351 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL929349.10 1 5760 -
1589352 1639351 20 N 50000 contig no
1639352 1743039 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 BX255937.13 62039 165726 -
1743040 1848974 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 BX548055.7 1 105935 +
1848975 1898974 23 N 50000 contig no
1898975 2122445 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 CR759874.20 1 223471 -
2122446 2133213 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX294662.13 1 10768 -
2133214 2183213 26 N 50000 contig no
2183214 2270033 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 BX890573.6 1 86820 +
2270034 2271256 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 BX248118.10 2001 3223 +
2271257 2441933 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 BX470256.11 1 170677 -
2441934 2454840 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 BX248118.10 179847 192753 +
2454841 2504840 31 N 50000 contig no
2504841 2591335 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX255905.4 1 86495 +
2591336 2767798 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX321888.21 1 176463 -
2767799 2843662 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX296516.3 84692 160555 +
2843663 2893662 35 N 50000 contig no
2893663 3002942 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX248104.5 1 109280 +
3002943 3190788 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX784034.8 1 187846 +
3190789 3248465 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX004766.9 1 57677 -
3248466 3298465 39 N 50000 contig no
3298466 3355932 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 BX276097.13 159189 216655 -
3355933 3563715 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 CT583724.9 434 208216 +
3563716 3662908 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 BX649298.7 1 99193 -
3662909 3712908 43 N 50000 contig no
3712909 3819274 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 BX511028.13 118645 225010 -
3819275 3954991 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 BX321868.13 1 135717 -
3954992 4004991 46 N 50000 contig no
4004992 4060779 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AL928716.15 190860 246647 -
4060780 4186146 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AL935049.19 23349 148715 +
4186147 4249220 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AL928716.15 1 63074 -
4249221 4299220 50 N 50000 contig no
4299221 4385855 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 BX530723.8 1 86635 +
4385856 4537415 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 BX682549.8 1 151560 +
4537416 4587073 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 BX323010.9 126739 176396 +
4587074 4637073 54 N 50000 contig no
4637074 4856214 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 AL954831.17 11704 230844 -
4856215 5052646 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 BX936462.20 1 196432 +
5052647 5235572 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 CR926887.9 1 182926 -
5235573 5237582 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 BX537272.5 172871 174880 -
5237583 5393101 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 BX927255.9 1 155519 -
5393102 5409192 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 60 BX537272.5 1 16091 -
5409193 5459192 61 N 50000 contig no
5459193 5630763 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 BX255917.3 46498 218068 -
5630764 5802436 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 AL928790.4 1 171673 +
5802437 5863586 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 BX255897.3 1 61150 -
5863587 5913586 65 N 50000 contig no
5913587 6001101 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 AL929237.18 1 87515 +
6001102 6060446 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 BX072572.8 1 59345 +
6060447 6271073 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 AL929507.37 1 210627 -
6271074 6321073 69 N 50000 contig no
6321074 6346661 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 BX957286.14 1 25588 +
6346662 6549392 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR855367.8 1 202731 -
6549393 6591612 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 BX936455.9 81488 123707 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
17
Gap types
type-3
17
Total clones
51
Clone HTGS Phases
finished
51
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,961,648
Total finished length of fin clones w/ overlap
8,575,908
Total finished length of fin clones w/o overlap
5,614,260
Total overlap length of fin+unfin clones
2,961,648
Total finished length of fin+unfin clones w/ overlap
8,575,908
Total finished length of fin+unfin clones w/o overlap
5,614,260

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