ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__8 (TPF updated: 2017-09-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-198N5
alt_ctg8_1_1
zC198N5
EPN details
CR759968.6
finished
2 CH211-1F7
alt_ctg8_1_1
zC1F7
EPN details
AL954819.21
finished
3 DKEY-184N1
alt_ctg8_1_1
zK184N1
EPN details
CR925863.7
finished
  GAP (type-3) length unknown    
5 CH73-70K4
alt_ctg8_1_2
zH70K4
EPN details
CU571083.4
finished
6 CH211-227I1
alt_ctg8_1_2
zC227I1
EPN details
AL935180.9
finished
7 CH211-207O15
alt_ctg8_1_2
zC207O15
EPN details
AL954371.6
finished
8 CH211-150O23
alt_ctg8_1_2
zC150O23
EPN details
BX005450.9
finished
  GAP (type-3) length unknown    
10 DKEY-192C10
alt_ctg8_1_3
zK192C10
EPN details
CR450766.6
finished
11 DKEY-150K1
alt_ctg8_1_3
zK150K1
EPN details
BX511146.6
finished
12 CH211-25E11
alt_ctg8_1_3
zC25E11
EPN details
CR361543.9
finished
13 CH73-222F22
alt_ctg8_1_3
zH222F22
EPN details
FP067410.4
finished
  GAP (type-3) length unknown    
15 RP71-24N4
alt_ctg8_1_4
bZ24N4
EPN details
BX323082.7
finished
16 DKEY-1K1
alt_ctg8_1_4
zK1K1
EPN details
CR394564.8
finished
17 CH211-133L5
alt_ctg8_1_4
zC133L5
EPN details
BX004774.4
finished
  GAP (type-3) length unknown    
19 DKEYP-82A1
alt_ctg8_1_5
zKp82A1
EPN details
BX664618.13
finished
20 DKEY-120P15
alt_ctg8_1_5
zK120P15
EPN details
AL954740.9
finished
21 CH211-216K22
alt_ctg8_1_5
zC216K22
EPN details
BX927144.24
finished
  GAP (type-3) length unknown    
23 DKEY-163F12
alt_ctg8_1_6
zK163F12
EPN details
BX784023.10
finished
24 DKEY-24F17
alt_ctg8_1_6
zK24F17
EPN details
BX005427.19
finished
25 CH211-222G19
alt_ctg8_1_6
zC222G19
EPN details
BX296553.6
finished
  GAP (type-3) length unknown    
27 CH211-105H13
alt_ctg8_1_7
zC105H13
EPN details
BX005102.6
finished
28 DKEY-202C5
alt_ctg8_1_7
zK202C5
EPN details
BX511191.4
finished
29 CH211-55K22
alt_ctg8_1_7
zC55K22
EPN details
BX004813.6
finished
  GAP (type-3) length unknown    
31 DKEY-208H1
alt_ctg8_1_8
zK208H1
EPN details
CT025733.6
finished
32 CH211-202D20
alt_ctg8_1_8
zC202D20
EPN details
AL928736.5
finished
33 CH211-157C18
alt_ctg8_1_8
zC157C18
EPN details
BX072561.8
finished
  GAP (type-3) length unknown    
35 CH211-163L21
alt_ctg8_1_9
CONTAINER
zC163L21
EPN details
AL929282.5
finished
36 DKEY-114K23
alt_ctg8_1_9
CONTAINED
zK114K23
EPN details
CR954296.5
finished
35 CH211-163L21
alt_ctg8_1_9
CONTAINER
zC163L21
EPN details
AL929282.5
finished
37 DKEY-21K19
alt_ctg8_1_9
zK21K19
EPN details
BX294377.10
finished
38 CH211-180J19
alt_ctg8_1_9
zC180J19
EPN details
AL928881.4
finished
  GAP (type-3) length unknown    
40 CH211-284C15
alt_ctg8_1_10
zC284C15
EPN details
CR450805.10
finished
41 DKEY-255D8
alt_ctg8_1_10
zK255D8
EPN details
CR388138.29
finished
42 CH211-215B24
alt_ctg8_1_10
zC215B24
EPN details
CR354582.14
finished
43 DKEY-71L10
alt_ctg8_1_10
zK71L10
EPN details
CR450738.8
finished
  GAP (type-3) length unknown    
45 DKEY-16C7
alt_ctg8_1_11
zK16C7
EPN details
CR450777.5
finished
46 CH211-12A23
alt_ctg8_1_11
zC12A23
EPN details
CR354558.20
finished
47 DKEYP-99G4
alt_ctg8_1_11
zKp99G4
EPN details
CR847868.9
finished
48 DKEY-204K18
alt_ctg8_1_11
zK204K18
EPN details
CR450728.8
finished
49 CH73-261F6
alt_ctg8_1_11
zH261F6
EPN details
CU207312.5
finished
  GAP (type-3) length unknown    
51 CH73-381D9
alt_ctg8_1_12
zH381D9
EPN details
CU076100.4
finished
52 DKEY-79M5
alt_ctg8_1_12
zK79M5
EPN details
BX000689.17
finished
53 CH211-270F13
alt_ctg8_1_12
zC270F13
EPN details
BX294117.17
finished
54 RP71-20D11
alt_ctg8_1_12
bZ20D11
EPN details
BX663511.8
finished
55 RP71-80I7
alt_ctg8_1_12
bZ80I7
EPN details
BX545852.5
finished
56 DKEYP-22F11
alt_ctg8_1_12
zKp22F11
EPN details
BX545918.4
finished
57 CH211-218O3
alt_ctg8_1_12
zC218O3
EPN details
BX248319.5
finished
58 DKEY-71K18
alt_ctg8_1_12
zK71K18
EPN details
BX072558.7
finished
59 DKEY-16K6
alt_ctg8_1_12
zK16K6
EPN details
AL845328.7
finished
  GAP (type-3) length unknown    
61 DKEY-109A10
alt_ctg8_1_13
zK109A10
EPN details
CU639397.9
finished
62 DKEYP-24B8
alt_ctg8_1_13
zKp24B8
EPN details
BX469929.9
finished
63 DKEY-53D10
alt_ctg8_1_13
zK53D10
EPN details
CR626904.15
finished
  GAP (type-3) length unknown    
65 CH211-85P6
alt_ctg8_1_14
zC85P6
EPN details
CR387936.8
finished
66 CH211-28A20
alt_ctg8_1_14
zC28A20
EPN details
CR933520.10
finished
67 CH211-247L22
alt_ctg8_1_14
zC247L22
EPN details
AL807792.6
finished
  GAP (type-3) length unknown    
69 CH211-248D20
alt_ctg8_1_15
zC248D20
EPN details
CR376747.28
finished
70 DKEY-163B6
alt_ctg8_1_15
zK163B6
EPN details
CR627491.15
finished
71 DKEY-185L9
alt_ctg8_1_15
zK185L9
EPN details
CR847548.8
finished
  GAP (type-3) length unknown    
73 DKEY-91M11
alt_ctg8_1_16
zK91M11
EPN details
AL845168.5
finished
74 CH211-235I18
alt_ctg8_1_16
zC235I18
EPN details
AL953914.11
finished
75 DKEY-36E17
alt_ctg8_1_16
zK36E17
EPN details
CR848681.7
finished
  GAP (type-3) length unknown    
77 CH211-42D10
alt_ctg8_1_17
zC42D10
EPN details
BX640478.14
finished
78 CH211-192C1
alt_ctg8_1_17
zC192C1
EPN details
BX572636.6
finished
79 DKEY-90N12
alt_ctg8_1_17
zK90N12
EPN details
CR376723.15
finished
  GAP (type-3) length unknown    
81 CH211-207O23
alt_ctg8_1_18
zC207O23
EPN details
AL929453.8
finished
82 CH211-194C22
alt_ctg8_1_18
zC194C22
EPN details
CR352327.13
finished
83 DKEY-46A10
alt_ctg8_1_18
zK46A10
EPN details
AL954357.17
finished
  GAP (type-3) length unknown    
85 CH73-367H6
alt_ctg8_1_19
zH367H6
EPN details
FQ311919.2
finished
86 DKEY-284O11
alt_ctg8_1_19
zK284O11
EPN details
CT737172.20
finished
87 CH73-147N15
alt_ctg8_1_19
zH147N15
EPN details
FP101862.7
finished
  GAP (type-3) length unknown    
89 CH211-247O1
alt_ctg8_1_20
zC247O1
EPN details
AL935283.16
finished
90 DKEY-245I10
alt_ctg8_1_20
zK245I10
EPN details
BX511073.3
finished
  GAP (type-3) length unknown    
92 CH211-205J13
alt_ctg8_1_21
zC205J13
EPN details
BX247865.16
finished
93 DKEY-179C19
alt_ctg8_1_21
zK179C19
EPN details
CR786581.30
finished
94
alt_ctg8_1_21
CABZ01049825
CABZ01049825.1
finished
  GAP (type-3) length unknown    
96 DKEY-117L15
alt_ctg8_1_22
zK117L15
EPN details
BX897670.7
finished
97 CH211-245M19
alt_ctg8_1_22
zC245M19
EPN details
CR385090.8
finished
98 CH211-258C22
alt_ctg8_1_22
zC258C22
EPN details
CR450779.8
finished
99 DKEY-205I12
alt_ctg8_1_22
zK205I12
EPN details
BX957334.8
finished
  GAP (type-3) length unknown    
101 DKEY-178N19
alt_ctg8_1_23
zK178N19
EPN details
CT025658.9
finished
102 CH211-243G16
alt_ctg8_1_23
zC243G16
EPN details
CR354438.9
finished
103 DKEYP-14D3
alt_ctg8_1_23
CONTAINER
zKp14D3
EPN details
BX322622.11
finished
104 CH211-127E17
alt_ctg8_1_23
CONTAINED
zC127E17
EPN details
BX088532.7
finished
103 DKEYP-14D3
alt_ctg8_1_23
CONTAINER
zKp14D3
EPN details
BX322622.11
finished
  GAP (type-3) length unknown    
106 CH211-286O14
alt_ctg8_1_24
zC286O14
EPN details
BX119954.10
finished
107 DKEY-100J1
alt_ctg8_1_24
zK100J1
EPN details
CR855220.13
finished
108 CH211-232E6
alt_ctg8_1_24
zC232E6
EPN details
BX548033.9
finished
  GAP (type-3) length unknown    
110 CH73-107I8
alt_ctg8_1_25
zH107I8
EPN details
CU915808.6
finished
111 CH211-139N20
alt_ctg8_1_25
zC139N20
EPN details
CU151879.11
finished
  GAP (type-3) length unknown    
113 CH211-220M6
alt_ctg8_1_26
zC220M6
EPN details
CR376751.15
finished
114 DKEY-281F2
alt_ctg8_1_26
zK281F2
EPN details
CR847797.8
finished
115 CH1073-323J3
alt_ctg8_1_26
zFD323J3
EPN details
CU655816.4
finished
  GAP (type-3) length unknown    
117 CH211-119D14
alt_ctg8_1_27
zC119D14
EPN details
CR354402.9
finished
118 DKEY-218M22
alt_ctg8_1_27
zK218M22
EPN details
AL844179.12
finished
119 CH211-220J14
alt_ctg8_1_27
zC220J14
EPN details
CR354389.15
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 117417 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR759968.6 64817 182233 -
117418 251838 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL954819.21 1 134421 -
251839 314389 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR925863.7 1 62551 -
314390 364389 4 N 50000 contig no
364390 421637 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CU571083.4 1 57248 +
421638 580644 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AL935180.9 1 159007 +
580645 702058 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AL954371.6 1541 122954 -
702059 772092 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX005450.9 1 70034 -
772093 822092 9 N 50000 contig no
822093 947401 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CR450766.6 1 125309 +
947402 1130137 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 BX511146.6 1 182736 +
1130138 1194946 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CR361543.9 2001 66809 +
1194947 1267385 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 FP067410.4 1 72439 -
1267386 1317385 14 N 50000 contig no
1317386 1347089 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 BX323082.7 69518 99221 -
1347090 1574564 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR394564.8 1 227475 +
1574565 1707451 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 BX004774.4 53494 186380 +
1707452 1757451 18 N 50000 contig no
1757452 1819300 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX664618.13 74058 135906 -
1819301 1971247 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL954740.9 1 151947 -
1971248 2044599 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX927144.24 1 73352 -
2044600 2094599 22 N 50000 contig no
2094600 2212527 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX784023.10 1 117928 +
2212528 2346415 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX005427.19 1 133888 +
2346416 2441563 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX296553.6 1 95148 -
2441564 2491563 26 N 50000 contig no
2491564 2644333 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX005102.6 1 152770 +
2644334 2724220 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX511191.4 1 79887 +
2724221 2768973 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX004813.6 1 44753 -
2768974 2818973 30 N 50000 contig no
2818974 2851736 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CT025733.6 1 32763 +
2851737 3038478 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AL928736.5 1 186742 +
3038479 3164950 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 BX072561.8 52616 179087 +
3164951 3214950 34 N 50000 contig no
3214951 3262239 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AL929282.5 83717 131005 -
3262240 3334682 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 CR954296.5 1 72443 -
3334683 3336679 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AL929282.5 5415 7411 -
3336680 3533743 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 BX294377.10 1 197064 +
3533744 3574719 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AL928881.4 1 40976 -
3574720 3624719 40 N 50000 contig no
3624720 3642276 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 44 CR450805.10 1 17557 +
3642277 3874596 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 44 CR388138.29 1 232320 -
3874597 4096502 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 44 CR354582.14 3169 225074 -
4096503 4109997 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 44 CR450738.8 88430 101924 +
4109998 4159997 45 N 50000 contig no
4159998 4250442 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CR450777.5 6847 97291 -
4250443 4427648 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CR354558.20 1 177206 +
4427649 4502073 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CR847868.9 72975 147399 +
4502074 4693098 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CR450728.8 2001 193025 +
4693099 4715896 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CU207312.5 20295 43092 +
4715897 4765896 51 N 50000 contig no
4765897 4767922 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 CU076100.4 1 2026 +
4767923 4911448 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX000689.17 1 143526 -
4911449 5023982 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX294117.17 2001 114534 +
5023983 5100415 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX663511.8 2001 78433 +
5100416 5146231 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX545852.5 2001 47816 +
5146232 5293352 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX545918.4 2001 149121 +
5293353 5484525 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX248319.5 2001 193173 +
5484526 5653889 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 BX072558.7 2001 171364 +
5653890 5744407 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 60 AL845328.7 105731 196248 +
5744408 5794407 61 N 50000 contig no
5794408 5826995 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 CU639397.9 51289 83876 -
5826996 5976282 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 BX469929.9 1 149287 -
5976283 6064440 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 CR626904.15 115532 203689 +
6064441 6114440 65 N 50000 contig no
6114441 6230728 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR387936.8 53908 170195 -
6230729 6396024 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR933520.10 1 165296 -
6396025 6519411 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 AL807792.6 37167 160553 +
6519412 6569411 69 N 50000 contig no
6569412 6653485 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR376747.28 69321 153394 -
6653486 6897242 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR627491.15 1 243757 +
6897243 7062223 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR847548.8 1 164981 -
7062224 7112223 73 N 50000 contig no
7112224 7262914 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 AL845168.5 1 150691 +
7262915 7414313 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 AL953914.11 1 151399 +
7414314 7465305 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 CR848681.7 1 50992 -
7465306 7515305 77 N 50000 contig no
7515306 7650320 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 BX640478.14 1 135015 +
7650321 7816154 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 BX572636.6 1 165834 -
7816155 7993932 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 CR376723.15 1 177778 -
7993933 8043932 81 N 50000 contig no
8043933 8206476 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 AL929453.8 33909 196452 -
8206477 8409801 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 CR352327.13 1 203325 +
8409802 8452935 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 AL954357.17 101971 145104 +
8452936 8502935 85 N 50000 contig no
8502936 8578765 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 FQ311919.2 1 75830 +
8578766 8748046 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CT737172.20 256 169536 -
8748047 8782950 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 FP101862.7 1 34904 -
8782951 8832950 89 N 50000 contig no
8832951 9030877 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 AL935283.16 1 197927 +
9030878 9101697 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 BX511073.3 1 70820 -
9101698 9151697 92 N 50000 contig no
9151698 9238352 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 BX247865.16 1 86655 +
9238353 9396174 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 CR786581.30 1 157822 -
9396175 9404855 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 CABZ01049825.1 1 8681 -
9404856 9454855 96 N 50000 contig no
9454856 9491884 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 BX897670.7 70531 107559 -
9491885 9593312 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 CR385090.8 1 101428 -
9593313 9771293 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 CR450779.8 1 177981 -
9771294 9872577 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 BX957334.8 1 101284 -
9872578 9922577 101 N 50000 contig no
9922578 9930755 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 106 CT025658.9 77788 85965 -
9930756 10064384 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 106 CR354438.9 2696 136324 -
10064385 10064395 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 106 BX322622.11 107245 107255 -
10064396 10175768 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 106 BX088532.7 1 111373 -
10175769 10176603 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 106 BX322622.11 1 835 -
10176604 10226603 107 N 50000 contig no
10226604 10292359 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 110 BX119954.10 89532 155287 -
10292360 10491356 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 110 CR855220.13 8533 207529 -
10491357 10543653 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 110 BX548033.9 1 52297 -
10543654 10593653 111 N 50000 contig no
10593654 10643356 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 113 CU915808.6 1 49703 +
10643357 10801395 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 113 CU151879.11 1 158039 -
10801396 10851395 114 N 50000 contig no
10851396 10860304 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 CR376751.15 220170 229078 -
10860305 11080203 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 CR847797.8 1 219899 -
11080204 11093624 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 CU655816.4 1 13421 -
11093625 11143624 118 N 50000 contig no
11143625 11247790 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 121 CR354402.9 1 104166 +
11247791 11429835 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 121 AL844179.12 61 182105 +
11429836 11433049 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 121 CR354389.15 120165 123378 +

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-198N5
alt_ctg8_1_1
zC198N5
-
-
CR759968.6
finished
182233 CHORI-211 5' / 3'
64817 / 134421
- / -
108324
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-1F7
alt_ctg8_1_1
zC1F7
-
-
AL954819.21
finished
177929 CHORI-211 5' / 3'
1 / 62551
- / -
71837
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-184N1
alt_ctg8_1_1
zK184N1
-
-
CR925863.7
finished
134388 DanioKey        
  GAP (type-3) length unknown                  
5 CH73-70K4
alt_ctg8_1_2
zH70K4
-
-
CU571083.4
finished
78523 CHORI-73 3' / 5'
57248 / 1
- / -
21275
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-227I1
alt_ctg8_1_2
zC227I1
-
-
AL935180.9
finished
159007 CHORI-211 3' / 3'
159007 / 122954
- / -
2000
0
Identified
2003-08-01
find_overl...
badger
 
7 CH211-207O15
alt_ctg8_1_2
zC207O15
-
-
AL954371.6
finished
124954 CHORI-211 5' / 3'
1541 / 70034
- / -
95724
0
Identified
2017-03-07
agp2oracle
humpub
 
8 CH211-150O23
alt_ctg8_1_2
zC150O23
-
-
BX005450.9
finished
164218 CHORI-211        
  GAP (type-3) length unknown                  
10 DKEY-192C10
alt_ctg8_1_3
zK192C10
-
-
CR450766.6
finished
132667 DanioKey 3' / 5'
125309 / 1
- / -
7360
0.03
Identified
2008-01-05
find_overl...
humpub
 
11 DKEY-150K1
alt_ctg8_1_3
zK150K1
-
-
BX511146.6
finished
182736 DanioKey 3' / 5'
182736 / 2001
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
12 CH211-25E11
alt_ctg8_1_3
zC25E11
-
-
CR361543.9
finished
66809 CHORI-211 3' / 3'
66809 / 72439
- / -
28845
0
Identified
2017-03-07
agp2oracle
humpub
 
13 CH73-222F22
alt_ctg8_1_3
zH222F22
-
-
FP067410.4
finished
101284 CHORI-73        
  GAP (type-3) length unknown                  
15 RP71-24N4
alt_ctg8_1_4
bZ24N4
-
-
BX323082.7
finished
99221 RPCI-71 5' / 5'
69518 / 1
- / -
69517
0
Identified
2017-03-07
agp2oracle
humpub
 
16 DKEY-1K1
alt_ctg8_1_4
zK1K1
-
-
CR394564.8
finished
227475 DanioKey 3' / 5'
227475 / 53494
- / -
53493
0
Identified
2017-03-07
agp2oracle
humpub
 
17 CH211-133L5
alt_ctg8_1_4
zC133L5
-
-
BX004774.4
finished
186380 CHORI-211        
  GAP (type-3) length unknown                  
19 DKEYP-82A1
alt_ctg8_1_5
zKp82A1
-
-
BX664618.13
finished
135906 DanioKeypilot 5' / 3'
74058 / 151947
- / -
74057
0
Identified
2017-03-07
agp2oracle
humpub
 
20 DKEY-120P15
alt_ctg8_1_5
zK120P15
-
-
AL954740.9
finished
151947 DanioKey 5' / 3'
1 / 73352
- / -
95151
0
Identified
2017-03-07
agp2oracle
humpub
 
21 CH211-216K22
alt_ctg8_1_5
zC216K22
-
-
BX927144.24
finished
168503 CHORI-211        
  GAP (type-3) length unknown                  
23 DKEY-163F12
alt_ctg8_1_6
zK163F12
-
-
BX784023.10
finished
231254 DanioKey 3' / 5'
117928 / 1
- / -
113326
0
Identified
2017-03-07
agp2oracle
humpub
 
24 DKEY-24F17
alt_ctg8_1_6
zK24F17
-
-
BX005427.19
finished
134851 DanioKey 3' / 3'
133888 / 95148
- / -
14030
0
Identified
2017-03-07
agp2oracle
humpub
 
25 CH211-222G19
alt_ctg8_1_6
zC222G19
-
-
BX296553.6
finished
108215 CHORI-211        
  GAP (type-3) length unknown                  
27 CH211-105H13
alt_ctg8_1_7
zC105H13
-
-
BX005102.6
finished
154770 CHORI-211 3' / 5'
152770 / 1
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
28 DKEY-202C5
alt_ctg8_1_7
zK202C5
-
-
BX511191.4
finished
79887 DanioKey 3' / 3'
79887 / 44753
- / -
84596
0
Identified
2017-03-07
agp2oracle
humpub
 
29 CH211-55K22
alt_ctg8_1_7
zC55K22
-
-
BX004813.6
finished
129349 CHORI-211        
  GAP (type-3) length unknown                  
31 DKEY-208H1
alt_ctg8_1_8
zK208H1
-
-
CT025733.6
finished
97229 DanioKey 3' / 5'
32763 / 1
- / -
64466
0
Identified
2017-03-07
agp2oracle
humpub
 
32 CH211-202D20
alt_ctg8_1_8
zC202D20
-
-
AL928736.5
finished
186742 CHORI-211 3' / 5'
186742 / 52616
- / -
52615
0
Identified
2017-03-07
agp2oracle
humpub
 
33 CH211-157C18
alt_ctg8_1_8
zC157C18
-
-
BX072561.8
finished
179087 CHORI-211        
  GAP (type-3) length unknown                  
35 CH211-163L21
alt_ctg8_1_9
CONTAINER
zC163L21
-
-
AL929282.5
finished
131005 CHORI-211 5' / 3'
83717 / 72443
- / -
72443
0
Identified
2017-03-07
agp2oracle
humpub
 
36 DKEY-114K23
alt_ctg8_1_9
CONTAINED
zK114K23
-
-
CR954296.5
finished
72443 DanioKey 5' / 3'
1 / 7411
- / -
72443
0
Identified
2017-03-07
agp2oracle
humpub
 
35 CH211-163L21
alt_ctg8_1_9
CONTAINER
zC163L21
-
-
AL929282.5
finished
131005 CHORI-211 5' / 5'
5415 / 1
- / -
5414
0
Identified
2017-03-07
agp2oracle
humpub
 
37 DKEY-21K19
alt_ctg8_1_9
zK21K19
-
-
BX294377.10
finished
197191 DanioKey 3' / 3'
197064 / 40976
- / -
109228
0
Identified
2017-03-07
agp2oracle
humpub
 
38 CH211-180J19
alt_ctg8_1_9
zC180J19
-
-
AL928881.4
finished
150077 CHORI-211        
  GAP (type-3) length unknown                  
40 CH211-284C15
alt_ctg8_1_10
zC284C15
-
-
CR450805.10
finished
114206 CHORI-211 3' / 3'
17557 / 232320
- / -
96649
0
Identified
2017-03-07
agp2oracle
humpub
 
41 DKEY-255D8
alt_ctg8_1_10
zK255D8
-
-
CR388138.29
finished
232320 DanioKey 5' / 3'
1 / 225074
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
42 CH211-215B24
alt_ctg8_1_10
zC215B24
-
-
CR354582.14
finished
227074 CHORI-211 5' / 5'
3169 / 88430
- / -
91597
0
Identified
2017-03-07
agp2oracle
humpub
 
43 DKEY-71L10
alt_ctg8_1_10
zK71L10
-
-
CR450738.8
finished
101924 DanioKey        
  GAP (type-3) length unknown                  
45 DKEY-16C7
alt_ctg8_1_11
zK16C7
-
-
CR450777.5
finished
97291 DanioKey 5' / 5'
6847 / 1
- / -
6846
0
Identified
2017-03-07
agp2oracle
humpub
 
46 CH211-12A23
alt_ctg8_1_11
zC12A23
-
-
CR354558.20
finished
177206 CHORI-211 3' / 5'
177206 / 72975
- / -
72986
0.02
Identified
2005-06-24
find_overl...
badger
 
47 DKEYP-99G4
alt_ctg8_1_11
zKp99G4
-
-
CR847868.9
finished
147399 DanioKeypilot 3' / 5'
147399 / 2001
- / -
2000
0
Identified
2005-03-25
find_overl...
badger
 
48 DKEY-204K18
alt_ctg8_1_11
zK204K18
-
-
CR450728.8
finished
193025 DanioKey 3' / 5'
193025 / 20295
- / -
20294
0
Identified
2017-03-07
agp2oracle
humpub
 
49 CH73-261F6
alt_ctg8_1_11
zH261F6
-
-
CU207312.5
finished
43092 CHORI-73        
  GAP (type-3) length unknown                  
51 CH73-381D9
alt_ctg8_1_12
zH381D9
-
-
CU076100.4
finished
17804 CHORI-73 3' / 3'
2026 / 143526
- / -
15778
0
Identified
2017-03-07
agp2oracle
humpub
 
52 DKEY-79M5
alt_ctg8_1_12
zK79M5
-
-
BX000689.17
finished
143526 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-07-30
find_overl...
badger
 
53 CH211-270F13
alt_ctg8_1_12
zC270F13
-
-
BX294117.17
finished
114534 CHORI-211 3' / 5'
114534 / 2001
- / -
2000
0
Identified
2004-09-18
find_overl...
badger
 
54 RP71-20D11
alt_ctg8_1_12
bZ20D11
-
-
BX663511.8
finished
78433 RPCI-71 3' / 5'
78433 / 2001
- / -
2000
0
Identified
2004-10-22
find_overl...
badger
 
55 RP71-80I7
alt_ctg8_1_12
bZ80I7
-
-
BX545852.5
finished
47816 RPCI-71 3' / 5'
47816 / 2001
- / -
2000
0
Identified
2004-10-22
find_overl...
badger
 
56 DKEYP-22F11
alt_ctg8_1_12
zKp22F11
-
-
BX545918.4
finished
149121 DanioKeypilot 3' / 5'
149121 / 2001
- / -
2000
0
Identified
2004-01-30
find_overl...
badger
 
57 CH211-218O3
alt_ctg8_1_12
zC218O3
-
-
BX248319.5
finished
193173 CHORI-211 3' / 5'
193173 / 2001
- / -
2000
0
Identified
2004-04-03
find_overl...
badger
 
58 DKEY-71K18
alt_ctg8_1_12
zK71K18
-
-
BX072558.7
finished
171364 DanioKey 3' / 5'
171364 / 105731
- / -
105730
0
Identified
2017-03-07
agp2oracle
humpub
 
59 DKEY-16K6
alt_ctg8_1_12
zK16K6
-
-
AL845328.7
finished
196248 DanioKey        
  GAP (type-3) length unknown                  
61 DKEY-109A10
alt_ctg8_1_13
zK109A10
-
-
CU639397.9
finished
83876 DanioKey 5' / 3'
51289 / 149287
- / -
51288
0
Identified
2017-03-07
agp2oracle
humpub
 
62 DKEYP-24B8
alt_ctg8_1_13
zKp24B8
-
-
BX469929.9
finished
149287 DanioKeypilot 5' / 5'
1 / 115532
- / -
115531
0
Identified
2017-03-07
agp2oracle
humpub
 
63 DKEY-53D10
alt_ctg8_1_13
zK53D10
-
-
CR626904.15
finished
203689 DanioKey        
  GAP (type-3) length unknown                  
65 CH211-85P6
alt_ctg8_1_14
zC85P6
-
-
CR387936.8
finished
170195 CHORI-211 5' / 3'
53908 / 165296
- / -
53907
0
Identified
2017-03-07
agp2oracle
humpub
 
66 CH211-28A20
alt_ctg8_1_14
zC28A20
-
-
CR933520.10
finished
165296 CHORI-211 5' / 5'
1 / 37167
- / -
37166
0
Identified
2017-03-07
agp2oracle
humpub
 
67 CH211-247L22
alt_ctg8_1_14
zC247L22
-
-
AL807792.6
finished
160553 CHORI-211        
  GAP (type-3) length unknown                  
69 CH211-248D20
alt_ctg8_1_15
zC248D20
-
-
CR376747.28
finished
153394 CHORI-211 5' / 5'
69321 / 1
- / -
69320
0
Identified
2017-03-07
agp2oracle
humpub
 
70 DKEY-163B6
alt_ctg8_1_15
zK163B6
-
-
CR627491.15
finished
243757 DanioKey 3' / 3'
243757 / 164981
- / -
84747
0
Identified
2017-03-07
agp2oracle
humpub
 
71 DKEY-185L9
alt_ctg8_1_15
zK185L9
-
-
CR847548.8
finished
249728 DanioKey        
  GAP (type-3) length unknown                  
73 DKEY-91M11
alt_ctg8_1_16
zK91M11
-
-
AL845168.5
finished
198627 DanioKey 3' / 5'
150691 / 1
- / -
47936
0
Identified
2017-03-07
agp2oracle
humpub
 
74 CH211-235I18
alt_ctg8_1_16
zC235I18
-
-
AL953914.11
finished
151737 CHORI-211 3' / 3'
151399 / 50992
- / -
37295
0
Identified
2017-03-07
agp2oracle
humpub
 
75 DKEY-36E17
alt_ctg8_1_16
zK36E17
-
-
CR848681.7
finished
87949 DanioKey        
  GAP (type-3) length unknown                  
77 CH211-42D10
alt_ctg8_1_17
zC42D10
-
-
BX640478.14
finished
191201 CHORI-211 3' / 3'
135015 / 165834
- / -
60110
0
Identified
2017-03-07
agp2oracle
humpub
 
78 CH211-192C1
alt_ctg8_1_17
zC192C1
-
-
BX572636.6
finished
169758 CHORI-211 5' / 3'
1 / 177778
- / -
35763
0
Identified
2017-03-07
agp2oracle
humpub
 
79 DKEY-90N12
alt_ctg8_1_17
zK90N12
-
-
CR376723.15
finished
213541 DanioKey        
  GAP (type-3) length unknown                  
81 CH211-207O23
alt_ctg8_1_18
zC207O23
-
-
AL929453.8
finished
196452 CHORI-211 5' / 5'
33909 / 1
- / -
33908
0
Identified
2017-03-07
agp2oracle
humpub
 
82 CH211-194C22
alt_ctg8_1_18
zC194C22
-
-
CR352327.13
finished
203325 CHORI-211 3' / 5'
203325 / 101971
- / -
101970
0
Identified
2017-03-07
agp2oracle
humpub
 
83 DKEY-46A10
alt_ctg8_1_18
zK46A10
-
-
AL954357.17
finished
145104 DanioKey        
  GAP (type-3) length unknown                  
85 CH73-367H6
alt_ctg8_1_19
zH367H6
-
-
FQ311919.2
finished
77535 CHORI-73 3' / 3'
75830 / 169536
- / -
1740
0
Identified
2017-03-07
agp2oracle
humpub
 
86 DKEY-284O11
alt_ctg8_1_19
zK284O11
-
-
CT737172.20
finished
169571 DanioKey 5' / 3'
256 / 34904
- / -
57091
0
Identified
2017-03-07
agp2oracle
humpub
 
87 CH73-147N15
alt_ctg8_1_19
zH147N15
-
-
FP101862.7
finished
91740 CHORI-73        
  GAP (type-3) length unknown                  
89 CH211-247O1
alt_ctg8_1_20
zC247O1
-
-
AL935283.16
finished
197927 CHORI-211 3' / 3'
197927 / 70820
- / -
148046
0
Identified
2017-03-07
agp2oracle
humpub
 
90 DKEY-245I10
alt_ctg8_1_20
zK245I10
-
-
BX511073.3
finished
218866 DanioKey        
  GAP (type-3) length unknown                  
92 CH211-205J13
alt_ctg8_1_21
zC205J13
-
-
BX247865.16
finished
87358 CHORI-211 3' / 3'
86655 / 157822
- / -
9098
0
Identified
2017-03-07
agp2oracle
humpub
 
93 DKEY-179C19
alt_ctg8_1_21
zK179C19
-
-
CR786581.30
finished
166217 DanioKey 5' / 3'
1 / 8681
- / -
23153
0
Identified
2017-03-07
agp2oracle
humpub
 
94
alt_ctg8_1_21
CABZ01049825
-
-
CABZ01049825.1
finished
31834 -        
  GAP (type-3) length unknown                  
96 DKEY-117L15
alt_ctg8_1_22
zK117L15
-
-
BX897670.7
finished
107559 DanioKey 5' / 3'
70531 / 101428
- / -
109324
0
Identified
2017-03-07
agp2oracle
humpub
 
97 CH211-245M19
alt_ctg8_1_22
zC245M19
-
-
CR385090.8
finished
140222 CHORI-211 5' / 3'
1 / 177981
- / -
2000
0
Identified
2009-01-28
find_overl...
ck1
 
98 CH211-258C22
alt_ctg8_1_22
zC258C22
-
-
CR450779.8
finished
179981 CHORI-211 5' / 3'
1 / 101284
- / -
2000
0
Identified
2009-01-28
find_overl...
ck1
 
99 DKEY-205I12
alt_ctg8_1_22
zK205I12
-
-
BX957334.8
finished
103284 DanioKey        
  GAP (type-3) length unknown                  
101 DKEY-178N19
alt_ctg8_1_23
zK178N19
-
-
CT025658.9
finished
85965 DanioKey 5' / 3'
77788 / 136324
- / -
77787
0
Identified
2017-03-07
agp2oracle
humpub
 
102 CH211-243G16
alt_ctg8_1_23
zC243G16
-
-
CR354438.9
finished
136324 CHORI-211 5' / 3'
2696 / 107255
- / -
52405
0
Identified
2017-03-08
agp2oracle
humpub
 
103 DKEYP-14D3
alt_ctg8_1_23
CONTAINER
zKp14D3
-
-
BX322622.11
finished
156965 DanioKeypilot 5' / 3'
107245 / 111373
- / -
115792
0
Identified
2017-03-09
agp2oracle
humpub
 
104 CH211-127E17
alt_ctg8_1_23
CONTAINED
zC127E17
-
-
BX088532.7
finished
115792 CHORI-211 5' / 3'
1 / 835
- / -
115792
0
Identified
2017-03-08
agp2oracle
humpub
 
103 DKEYP-14D3
alt_ctg8_1_23
CONTAINER
zKp14D3
-
-
BX322622.11
finished
156965 DanioKeypilot        
  GAP (type-3) length unknown                  
106 CH211-286O14
alt_ctg8_1_24
zC286O14
-
-
BX119954.10
finished
155287 CHORI-211 5' / 3'
89532 / 207529
- / -
89531
0
Identified
2017-03-07
agp2oracle
humpub
 
107 DKEY-100J1
alt_ctg8_1_24
zK100J1
-
-
CR855220.13
finished
207529 DanioKey 5' / 3'
8533 / 52297
- / -
127209
0
Identified
2017-03-07
agp2oracle
humpub
 
108 CH211-232E6
alt_ctg8_1_24
zC232E6
-
-
BX548033.9
finished
170974 CHORI-211        
  GAP (type-3) length unknown                  
110 CH73-107I8
alt_ctg8_1_25
zH107I8
-
-
CU915808.6
finished
83184 CHORI-73 3' / 3'
49703 / 158039
- / -
33481
0
Identified
2017-03-07
agp2oracle
humpub
 
111 CH211-139N20
alt_ctg8_1_25
zC139N20
-
-
CU151879.11
finished
158039 CHORI-211        
  GAP (type-3) length unknown                  
113 CH211-220M6
alt_ctg8_1_26
zC220M6
-
-
CR376751.15
finished
229078 CHORI-211 5' / 3'
220170 / 219899
- / -
220183
0
Identified
2017-03-07
agp2oracle
humpub
 
114 DKEY-281F2
alt_ctg8_1_26
zK281F2
-
-
CR847797.8
finished
219913 DanioKey 5' / 3'
1 / 13421
- / -
9466
0
Identified
2017-03-07
agp2oracle
humpub
 
115 CH1073-323J3
alt_ctg8_1_26
zFD323J3
-
-
CU655816.4
finished
22887 CHORI1073        
  GAP (type-3) length unknown                  
117 CH211-119D14
alt_ctg8_1_27
zC119D14
-
-
CR354402.9
finished
169701 CHORI-211 3' / 5'
104166 / 61
- / -
65595
0
Identified
2017-03-07
agp2oracle
humpub
 
118 DKEY-218M22
alt_ctg8_1_27
zK218M22
-
-
AL844179.12
finished
182105 DanioKey 3' / 5'
182105 / 120165
- / -
120164
0
Identified
2017-03-07
agp2oracle
humpub
 
119 CH211-220J14
alt_ctg8_1_27
zC220J14
-
-
CR354389.15
finished
123378 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
26
Gap types
type-3
26
Total clones
93
Clone HTGS Phases
finished
93
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
3,614,784
Total finished length of fin clones w/ overlap
13,698,520
Total finished length of fin clones w/o overlap
10,083,736
Total overlap length of fin+unfin clones
3,614,784
Total finished length of fin+unfin clones w/ overlap
13,698,520
Total finished length of fin+unfin clones w/o overlap
10,083,736

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