ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__25 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-117K16
alt_ctg25_1_1
zC117K16
BX957346.14
finished
2 DKEY-178E8
alt_ctg25_1_1
zK178E8
CR847896.10
finished
3 CH211-254L20
alt_ctg25_1_1
zC254L20
CR361563.10
finished
  GAP (type-3) length unknown    
5 CH73-334L12
alt_ctg25_1_2
zH334L12
CU394253.9
finished
6 CH211-146D6
alt_ctg25_1_2
zC146D6
BX001042.4
finished
7 CH73-47K21
alt_ctg25_1_2
zH47K21
FQ311933.4
finished
  GAP (type-3) length unknown    
9 CH73-320O5
alt_ctg25_1_3
zH320O5
FO907107.2
contiguous
10 CH211-214K3
alt_ctg25_1_3
zC214K3
AL954667.9
finished
11 DKEY-18O5
alt_ctg25_1_3
zK18O5
BX120011.13
finished
  GAP (type-3) length unknown    
13 CH1073-142G5
alt_ctg25_1_4
zFD142G5
FQ790207.5
finished
14 CH211-266F12
alt_ctg25_1_4
zC266F12
BX510323.8
finished
15 DKEYP-92C6
alt_ctg25_1_4
zKp92C6
CR352216.10
finished
  GAP (type-3) length unknown    
17 DKEY-194F5
alt_ctg25_1_5
zK194F5
AL928934.7
finished
18 DKEYP-32G6
alt_ctg25_1_5
zKp32G6
BX294435.5
finished
19 CH211-149O7
alt_ctg25_1_5
zC149O7
BX005103.5
finished
  GAP (type-3) length unknown    
21 DKEYP-55H4
alt_ctg25_1_6
zKp55H4
CR450808.5
finished
22 CH211-284P4
alt_ctg25_1_6
zC284P4
BX855604.5
finished
23 CH73-64L15
alt_ctg25_1_6
zH64L15
CU104725.6
finished
  GAP (type-3) length unknown    
25 DKEY-28J3
alt_ctg25_1_7
zK28J3
AL844193.7
finished
26 CH211-198E11
alt_ctg25_1_7
zC198E11
CR382364.23
finished
27 CH211-51L3
alt_ctg25_1_7
zC51L3
AL929309.6
finished
  GAP (type-3) length unknown    
29 CH211-197E20
alt_ctg25_1_8
zC197E20
CR407545.9
finished
30 CH211-253F2
alt_ctg25_1_8
zC253F2
BX510997.9
finished
31 CH211-158N5
alt_ctg25_1_8
zC158N5
CR450754.5
finished
  GAP (type-3) length unknown    
33 DKEYP-67E1
alt_ctg25_1_9
zKp67E1
BX323543.11
finished
34 CH211-235O4
alt_ctg25_1_9
zC235O4
CR376782.8
finished
35 CH211-142G3
alt_ctg25_1_9
zC142G3
BX000485.4
finished
  GAP (type-3) length unknown    
37 DKEY-217G8
alt_ctg25_1_10
zK217G8
CU468035.9
finished
38 DKEY-207B21
alt_ctg25_1_10
zK207B21
CR384053.8
finished
39 CH211-79D17
alt_ctg25_1_10
zC79D17
FO904859.2
contiguous
  GAP (type-3) length unknown    
41 DKEY-106N21
alt_ctg25_1_11
zK106N21
BX323796.15
finished
42 CH211-234B4
alt_ctg25_1_11
zC234B4
AL954645.7
finished
43 CH211-194I19
alt_ctg25_1_11
zC194I19
CT033837.10
finished
  GAP (type-3) length unknown    
45 DKEYP-19H3
alt_ctg25_1_12
zKp19H3
BX294110.8
finished
46 CH211-199M16
alt_ctg25_1_12
zC199M16
CR354535.11
finished
47 DKEY-30O15
alt_ctg25_1_12
zK30O15
CR847527.7
finished
  GAP (type-3) length unknown    
49 CH73-220M18
alt_ctg25_1_13
zH220M18
CU181911.8
finished
50 DKEY-88P16
alt_ctg25_1_13
zK88P16
CR846093.10
finished
  GAP (type-3) length unknown    
52 CH211-127M7
alt_ctg25_1_14
zC127M7
AL953857.7
finished
53 DKEY-164J20
alt_ctg25_1_14
zK164J20
BX324121.9
finished
54 CH73-189J12
alt_ctg25_1_14
zH189J12
CU929454.9
finished
  GAP (type-3) length unknown    
56 DKEY-208B15
alt_ctg25_1_15
zK208B15
CR759963.12
finished
57 DKEY-246P3
alt_ctg25_1_15
zK246P3
CR513783.5
finished
58 DKEY-203K18
alt_ctg25_1_15
zK203K18
CR354561.11
finished
  GAP (type-3) length unknown    
60 DKEY-81E3
alt_ctg25_1_16
zK81E3
CR759824.9
finished
61 CH211-233P10
alt_ctg25_1_16
zC233P10
BX248401.10
finished
62 DKEY-150F14
alt_ctg25_1_16
zK150F14
CU468289.8
finished
  GAP (type-3) length unknown    
64 CH73-95K3
alt_ctg25_1_17
zH95K3
CU928221.10
finished
65 DKEY-264B7
alt_ctg25_1_17
zK264B7
CR788324.7
finished
66 DKEY-183F2
alt_ctg25_1_17
zK183F2
BX908801.19
finished
  GAP (type-3) length unknown    
68 DKEYP-91C1
alt_ctg25_1_18
zKp91C1
AL929050.6
finished
69 DKEY-257P9
alt_ctg25_1_18
zK257P9
BX255928.7
finished
70 CH211-140G18
alt_ctg25_1_18
zC140G18
BX284614.8
finished
71 DKEY-4M3
alt_ctg25_1_18
zK4M3
CR855275.7
finished
  GAP (type-3) length unknown    
73 CH211-278A17
alt_ctg25_1_19
CONTAINER
zC278A17
CR759741.10
finished
74 CH73-271C12
alt_ctg25_1_19
CONTAINED
zH271C12
CU463131.6
finished
73 CH211-278A17
alt_ctg25_1_19
CONTAINER
zC278A17
CR759741.10
finished
  GAP (type-3) length unknown    
76 CH211-193F12
alt_ctg25_1_20
zC193F12
CU024870.3
finished
77 CH211-193K3
alt_ctg25_1_20
zC193K3
CR352222.6
finished
78 CH211-163I12
alt_ctg25_1_20
zC163I12
BX005420.7
finished
79 DKEY-5M24
alt_ctg25_1_20
zK5M24
BX571822.6
finished
80 DKEY-217J16
alt_ctg25_1_20
zK217J16
BX548049.9
finished
81 DKEYP-19E1
alt_ctg25_1_20
zKp19E1
BX005383.8
finished
  GAP (type-3) length unknown    
83 DKEY-286F11
alt_ctg25_1_21
zK286F11
CT573392.14
finished
84 CH211-214G2
alt_ctg25_1_21
zC214G2
BX005431.3
finished
85 DKEY-96J22
alt_ctg25_1_21
zK96J22
CR854832.20
finished
  GAP (type-3) length unknown    
87 CH211-91P5
alt_ctg25_1_22
zC91P5
CR354392.12
finished
88 DKEY-19L19
alt_ctg25_1_22
zK19L19
BX248137.9
finished
89 CH211-12K12
alt_ctg25_1_22
zC12K12
CU457815.12
finished
  GAP (type-3) length unknown    
91 CH211-106E7
alt_ctg25_1_23
zC106E7
BX323444.28
finished
92 CH211-227E15
alt_ctg25_1_23
zC227E15
AL935169.6
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 147598 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX957346.14 2001 149598 -
147599 288869 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR847896.10 1 141271 -
288870 312450 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR361563.10 1 23581 -
312451 362450 4 N 50000 contig no
362451 378053 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU394253.9 83035 98637 -
378054 540530 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX001042.4 5719 168195 +
540531 549313 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 FQ311933.4 133149 141931 +
549314 599313 8 N 50000 contig no
599314 642362 9 A FO907107.2 1 43049 +
642363 836532 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL954667.9 8488 202657 +
836533 925664 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 BX120011.13 136544 225675 +
925665 975664 12 N 50000 contig no
975665 978142 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 FQ790207.5 28386 30863 -
978143 1146109 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX510323.8 1338 169304 -
1146110 1156199 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR352216.10 1 10090 -
1156200 1206199 16 N 50000 contig no
1206200 1251532 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL928934.7 2001 47333 -
1251533 1379845 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX294435.5 1 128313 +
1379846 1401874 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX005103.5 1 22029 -
1401875 1451874 20 N 50000 contig no
1451875 1512348 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR450808.5 1 60474 +
1512349 1645427 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX855604.5 1 133079 +
1645428 1665109 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CU104725.6 1 19682 +
1665110 1715109 24 N 50000 contig no
1715110 1837977 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL844193.7 1 122868 +
1837978 2044549 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR382364.23 110 206681 +
2044550 2212723 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL929309.6 23572 191745 +
2212724 2262723 28 N 50000 contig no
2262724 2271527 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR407545.9 94384 103187 -
2271528 2376144 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 BX510997.9 1 104617 +
2376145 2415636 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR450754.5 1 39492 -
2415637 2465636 32 N 50000 contig no
2465637 2607527 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX323543.11 1 141891 +
2607528 2727808 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR376782.8 1 120281 -
2727809 2791040 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX000485.4 1 63232 -
2791041 2841040 36 N 50000 contig no
2841041 2906933 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 CU468035.9 159506 225398 -
2906934 3083740 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 CR384053.8 1 176807 -
3083741 3166144 39 A FO904859.2 60470 142873 +
3166145 3216144 40 N 50000 contig no
3216145 3335824 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX323796.15 19904 139583 -
3335825 3517519 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 AL954645.7 447 182141 +
3517520 3546931 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 CT033837.10 35895 65306 +
3546932 3596931 44 N 50000 contig no
3596932 3601534 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 BX294110.8 1 4603 +
3601535 3826648 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 CR354535.11 1 225114 -
3826649 3944518 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 CR847527.7 23488 141357 +
3944519 3994518 48 N 50000 contig no
3994519 4050991 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CU181911.8 1 56473 +
4050992 4116546 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CR846093.10 60999 126553 +
4116547 4166546 51 N 50000 contig no
4166547 4192772 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL953857.7 1 26226 +
4192773 4373937 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX324121.9 1 181165 +
4373938 4388717 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CU929454.9 1 14780 -
4388718 4438717 55 N 50000 contig no
4438718 4488881 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR759963.12 1 50164 +
4488882 4659562 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR513783.5 1 170681 +
4659563 4750061 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR354561.11 1 90499 -
4750062 4800061 59 N 50000 contig no
4800062 4853720 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 CR759824.9 1 53659 +
4853721 4998594 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 BX248401.10 1 144874 +
4998595 5039462 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 CU468289.8 1 40868 -
5039463 5089462 63 N 50000 contig no
5089463 5096497 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CU928221.10 1 7035 +
5096498 5289858 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR788324.7 1 193361 +
5289859 5348732 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 BX908801.19 1 58874 -
5348733 5398732 67 N 50000 contig no
5398733 5544276 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 71 AL929050.6 1 145544 +
5544277 5677109 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 71 BX255928.7 1 132833 -
5677110 5835937 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 71 BX284614.8 1 158828 -
5835938 5937482 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 71 CR855275.7 58416 159960 +
5937483 5987482 72 N 50000 contig no
5987483 6015136 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR759741.10 1 27654 +
6015137 6135490 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CU463131.6 1 120354 -
6135491 6155212 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR759741.10 146124 165845 +
6155213 6205212 76 N 50000 contig no
6205213 6319605 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 CU024870.3 2001 116393 -
6319606 6374081 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 CR352222.6 1 54476 -
6374082 6514405 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 BX005420.7 1 140324 -
6514406 6676193 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 BX571822.6 1 161788 -
6676194 6849541 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 BX548049.9 1 173348 -
6849542 6927157 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 82 BX005383.8 65113 142728 +
6927158 6977157 83 N 50000 contig no
6977158 7049938 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 CT573392.14 1 72781 +
7049939 7250529 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 BX005431.3 1 200591 +
7250530 7459540 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 CR854832.20 1 209011 -
7459541 7509540 87 N 50000 contig no
7509541 7526504 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 CR354392.12 61558 78521 -
7526505 7736399 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 BX248137.9 2 209896 -
7736400 7818391 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 CU457815.12 56188 138179 +
7818392 7868391 91 N 50000 contig no
7868392 7881146 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 BX323444.28 155866 168620 -
7881147 8039268 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 AL935169.6 1 158122 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
22
Gap types
type-3
22
Total clones
70
Clone HTGS Phases
contiguous
2
finished
68
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,706,472
Total finished length of fin clones w/ overlap
9,509,052
Total finished length of fin clones w/o overlap
6,802,580
Total overlap length of fin+unfin clones
2,840,262
Total finished length of fin+unfin clones w/ overlap
9,759,808
Total finished length of fin+unfin clones w/o overlap
6,919,546

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