ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__9 (TPF updated: 2017-11-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-62A12
alt_ctg9_1_1
zK62A12
CR407547.14
finished
2 DKEY-13A17
alt_ctg9_1_1
zK13A17
CR385027.12
finished
3 DKEY-33M14
alt_ctg9_1_1
zK33M14
BX571704.13
finished
  GAP (type-3) length unknown    
5 DKEY-30L22
alt_ctg9_1_2
zK30L22
BX323049.20
finished
6 CH211-160E15
alt_ctg9_1_2
zC160E15
BX005088.4
finished
7 CH211-51O18
alt_ctg9_1_2
zC51O18
BX950210.10
finished
  GAP (type-3) length unknown    
9 DKEY-180E22
alt_ctg9_1_3
zK180E22
CT573248.10
finished
10 CH211-190A12
alt_ctg9_1_3
zC190A12
CU137641.6
finished
11 CH211-43F22
alt_ctg9_1_3
zC43F22
CR388074.9
finished
12 DKEY-30H3
alt_ctg9_1_3
zK30H3
AL954845.21
finished
13 CH211-221B16
alt_ctg9_1_3
zC221B16
BX510646.5
finished
  GAP (type-3) length unknown    
15 DKEY-179E14
alt_ctg9_1_4
zK179E14
CR759785.7
finished
16 DKEY-18L16
alt_ctg9_1_4
zK18L16
CR388221.20
finished
17 CH211-93A19
alt_ctg9_1_4
zC93A19
AL929161.10
finished
  GAP (type-3) length unknown    
19 CH1073-486C21
alt_ctg9_1_5
zFD486C21
CU928124.3
finished
20 DKEY-151O8
alt_ctg9_1_5
zK151O8
BX897687.7
finished
21 CH211-224M9
alt_ctg9_1_5
zC224M9
CR361551.8
finished
  GAP (type-3) length unknown    
23 CH211-247J6
alt_ctg9_1_6
zC247J6
CR762444.16
finished
24 CH211-58J23
alt_ctg9_1_6
zC58J23
CR936950.7
finished
25 CH211-235F16
alt_ctg9_1_6
zC235F16
BX510311.6
finished
26 CH211-157H7
alt_ctg9_1_6
zC157H7
CR456628.8
finished
  GAP (type-3) length unknown    
28 RP71-68N21
alt_ctg9_1_7
bZ68N21
BX511129.15
finished
29 CH211-196H1
alt_ctg9_1_7
zC196H1
CU151884.5
finished
30 DKEY-51D17
alt_ctg9_1_7
zK51D17
CR392366.4
finished
  GAP (type-3) length unknown    
32 DKEY-19J7
alt_ctg9_1_8
zK19J7
BX649266.9
finished
33 CH211-278C10
alt_ctg9_1_8
zC278C10
BX296542.12
finished
34 DKEY-58D5
alt_ctg9_1_8
zK58D5
CR392332.8
finished
  GAP (type-3) length unknown    
36 CH211-212N6
alt_ctg9_1_9
zC212N6
BX545855.16
finished
37 DKEY-46O18
alt_ctg9_1_9
zK46O18
CR854911.14
finished
38 DKEY-189G17
alt_ctg9_1_9
zK189G17
BX548053.7
finished
  GAP (type-3) length unknown    
40 DKEY-57B6
alt_ctg9_1_10
zK57B6
CR392363.4
finished
41 CH211-14A14
alt_ctg9_1_10
zC14A14
AL929090.4
finished
42 DKEY-155F10
alt_ctg9_1_10
zK155F10
BX957274.8
finished
  GAP (type-3) length unknown    
44 DKEYP-74A11
alt_ctg9_1_11
zKp74A11
CR545476.14
finished
45 DKEY-10D15
alt_ctg9_1_11
zK10D15
BX247888.10
finished
46 DKEY-9G20
alt_ctg9_1_11
zK9G20
CR538727.16
finished
  GAP (type-3) length unknown    
48 CH211-231D19
alt_ctg9_1_12
zC231D19
BX936421.16
finished
49 CH211-241P24
alt_ctg9_1_12
zC241P24
BX248498.5
finished
50 DKEY-52O2
alt_ctg9_1_12
zK52O2
CR405716.10
finished
  GAP (type-3) length unknown    
52 DKEY-156H23
alt_ctg9_1_13
zK156H23
BX005408.12
finished
53 CH211-188M3
alt_ctg9_1_13
zC188M3
AL953877.5
finished
54 DKEY-193N17
alt_ctg9_1_13
zK193N17
CR392351.12
finished
  GAP (type-3) length unknown    
56 DKEYP-117D6
alt_ctg9_1_14
zKp117D6
CR936357.5
finished
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
CR376856.9
finished
58 CH211-152N19
alt_ctg9_1_14
CONTAINED
zC152N19
BX005146.4
finished
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
CR376856.9
finished
  GAP (type-3) length unknown    
60 DKEY-90K7
alt_ctg9_1_15
zK90K7
CR376862.19
finished
61 CH211-31O18
alt_ctg9_1_15
zC31O18
BX004815.6
finished
62 DKEY-253E1
alt_ctg9_1_15
zK253E1
CT573148.14
finished
  GAP (type-3) length unknown    
64 CH211-87M5
alt_ctg9_1_16
zC87M5
BX001055.11
finished
65 CH211-225H17
alt_ctg9_1_16
zC225H17
BX276095.7
finished
66 DKEY-177E22
alt_ctg9_1_16
zK177E22
BX649396.3
finished
  GAP (type-3) length unknown    
68 DKEY-46K9
alt_ctg9_1_17
zK46K9
BX537139.17
finished
69 CH211-189M4
alt_ctg9_1_17
zC189M4
CU151883.12
finished
70 CH211-243C19
alt_ctg9_1_17
zC243C19
CR753904.7
finished
  GAP (type-3) length unknown    
72 DKEY-21O13
alt_ctg9_1_18
zK21O13
BX601644.6
finished
73 DKEY-255G14
alt_ctg9_1_18
zK255G14
BX294188.11
finished
74 DKEY-205J8
alt_ctg9_1_18
zK205J8
CR759897.12
finished
  GAP (type-3) length unknown    
76 DKEY-202N12
alt_ctg9_1_19
zK202N12
CR759895.13
finished
77 CH211-225C13
alt_ctg9_1_19
zC225C13
BX855621.15
finished
78 CH211-246M4
alt_ctg9_1_19
zC246M4
AL807829.21
finished
  GAP (type-3) length unknown    
80 CH211-45C16
alt_ctg9_1_20
zC45C16
CR753902.11
finished
81 RP71-27M6
alt_ctg9_1_20
bZ27M6
BX322584.16
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 109390 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR407547.14 1 109390 +
109391 337844 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR385027.12 1 228454 -
337845 521090 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX571704.13 1 183246 -
521091 571090 4 N 50000 contig no
571091 631510 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX323049.20 1 60420 +
631511 824997 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX005088.4 1 193487 -
824998 897329 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX950210.10 15178 87509 +
897330 947329 8 N 50000 contig no
947330 1010928 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CT573248.10 81326 144924 -
1010929 1145519 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CU137641.6 1 134591 -
1145520 1228211 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CR388074.9 1 82692 -
1228212 1452554 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AL954845.21 2001 226343 +
1452555 1608708 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX510646.5 44168 200321 +
1608709 1658708 14 N 50000 contig no
1658709 1701481 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR759785.7 1 42773 +
1701482 1930001 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR388221.20 3461 231980 +
1930002 2049760 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL929161.10 1 119759 -
2049761 2099760 18 N 50000 contig no
2099761 2105502 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CU928124.3 1 5742 +
2105503 2313729 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX897687.7 1 208227 -
2313730 2442182 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CR361551.8 49154 177606 +
2442183 2492182 22 N 50000 contig no
2492183 2637417 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR762444.16 1 145235 +
2637418 2686286 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR936950.7 1 48869 +
2686287 2882531 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 BX510311.6 1 196245 -
2882532 2913929 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR456628.8 136704 168101 +
2913930 2963929 27 N 50000 contig no
2963930 2977965 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX511129.15 1 14036 +
2977966 3177793 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CU151884.5 291 200118 -
3177794 3271676 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CR392366.4 32016 125898 +
3271677 3321676 31 N 50000 contig no
3321677 3423865 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX649266.9 1 102189 +
3423866 3598749 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX296542.12 1 174884 +
3598750 3684769 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 CR392332.8 42531 128550 +
3684770 3734769 35 N 50000 contig no
3734770 3843588 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX545855.16 1 108819 +
3843589 4074866 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 CR854911.14 1 231278 -
4074867 4221562 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX548053.7 64135 210830 +
4221563 4271562 39 N 50000 contig no
4271563 4417184 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 CR392363.4 1 145622 +
4417185 4583374 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 AL929090.4 1477 167666 -
4583375 4708915 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 BX957274.8 91277 216817 +
4708916 4758915 43 N 50000 contig no
4758916 4931453 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 CR545476.14 1 172538 +
4931454 5120476 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 BX247888.10 1 189023 +
5120477 5258164 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 CR538727.16 17634 155321 +
5258165 5308164 47 N 50000 contig no
5308165 5355852 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX936421.16 59435 107122 -
5355853 5527200 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX248498.5 1 171348 +
5527201 5602191 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 CR405716.10 127542 202532 +
5602192 5652191 51 N 50000 contig no
5652192 5808833 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX005408.12 53566 210207 -
5808834 5960913 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL953877.5 1 152080 +
5960914 6041683 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CR392351.12 1 80770 -
6041684 6091683 55 N 50000 contig no
6091684 6130035 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR936357.5 1 38352 +
6130036 6130036 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR376856.9 2001 2001 +
6130037 6310894 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 BX005146.4 1 180858 +
6310895 6318737 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR376856.9 171211 179053 +
6318738 6368737 60 N 50000 contig no
6368738 6440014 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 CR376862.19 1 71277 +
6440015 6612913 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX004815.6 1 172899 +
6612914 6684774 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 CT573148.14 39300 111160 +
6684775 6734774 64 N 50000 contig no
6734775 6747503 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX001055.11 181690 194418 -
6747504 6944576 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX276095.7 177 197249 +
6944577 6954045 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX649396.3 37439 46907 +
6954046 7004045 68 N 50000 contig no
7004046 7246286 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 BX537139.17 1 242241 +
7246287 7393481 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CU151883.12 1 147195 -
7393482 7395475 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR753904.7 45422 47415 +
7395476 7445475 72 N 50000 contig no
7445476 7602943 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 BX601644.6 1 157468 +
7602944 7864886 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 BX294188.11 1 261943 +
7864887 8047663 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR759897.12 14146 196922 +
8047664 8097663 76 N 50000 contig no
8097664 8133173 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 CR759895.13 1 35510 +
8133174 8311316 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 BX855621.15 305 178447 +
8311317 8469181 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 AL807829.21 8250 166114 +
8469182 8519181 80 N 50000 contig no
8519182 8542536 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 82 CR753902.11 134875 158229 -
8542537 8686252 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 82 BX322584.16 1 143716 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
19
Gap types
type-3
19
Total clones
62
Clone HTGS Phases
finished
62
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,569,036
Total finished length of fin clones w/ overlap
10,297,445
Total finished length of fin clones w/o overlap
7,728,409
Total overlap length of fin+unfin clones
2,569,036
Total finished length of fin+unfin clones w/ overlap
10,297,445
Total finished length of fin+unfin clones w/o overlap
7,728,409

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