ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__9 (TPF updated: 2017-09-19)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-62A12
alt_ctg9_1_1
zK62A12
EPN details
CR407547.14
finished
2 DKEY-13A17
alt_ctg9_1_1
zK13A17
EPN details
CR385027.12
finished
3 DKEY-33M14
alt_ctg9_1_1
zK33M14
EPN details
BX571704.13
finished
  GAP (type-3) length unknown    
5 DKEY-30L22
alt_ctg9_1_2
zK30L22
EPN details
BX323049.20
finished
6 CH211-160E15
alt_ctg9_1_2
zC160E15
EPN details
BX005088.4
finished
7 CH211-51O18
alt_ctg9_1_2
zC51O18
EPN details
BX950210.10
finished
  GAP (type-3) length unknown    
9 DKEY-180E22
alt_ctg9_1_3
zK180E22
EPN details
CT573248.10
finished
10 CH211-190A12
alt_ctg9_1_3
zC190A12
EPN details
CU137641.6
finished
11 CH211-43F22
alt_ctg9_1_3
zC43F22
EPN details
CR388074.9
finished
12 DKEY-30H3
alt_ctg9_1_3
zK30H3
EPN details
AL954845.21
finished
13 CH211-221B16
alt_ctg9_1_3
zC221B16
EPN details
BX510646.5
finished
  GAP (type-3) length unknown    
15 DKEY-179E14
alt_ctg9_1_4
zK179E14
EPN details
CR759785.7
finished
16 DKEY-18L16
alt_ctg9_1_4
zK18L16
EPN details
CR388221.20
finished
17 CH211-93A19
alt_ctg9_1_4
zC93A19
EPN details
AL929161.10
finished
  GAP (type-3) length unknown    
19 CH1073-486C21
alt_ctg9_1_5
zFD486C21
EPN details
CU928124.3
finished
20 DKEY-151O8
alt_ctg9_1_5
zK151O8
EPN details
BX897687.7
finished
21 CH211-224M9
alt_ctg9_1_5
zC224M9
EPN details
CR361551.8
finished
  GAP (type-3) length unknown    
23 CH211-247J6
alt_ctg9_1_6
zC247J6
EPN details
CR762444.16
finished
24 CH211-58J23
alt_ctg9_1_6
zC58J23
EPN details
CR936950.7
finished
25 CH211-235F16
alt_ctg9_1_6
zC235F16
EPN details
BX510311.6
finished
26 CH211-157H7
alt_ctg9_1_6
zC157H7
EPN details
CR456628.8
finished
  GAP (type-3) length unknown    
28 RP71-68N21
alt_ctg9_1_7
bZ68N21
EPN details
BX511129.15
finished
29 CH211-196H1
alt_ctg9_1_7
zC196H1
EPN details
CU151884.5
finished
30 DKEY-51D17
alt_ctg9_1_7
zK51D17
EPN details
CR392366.4
finished
  GAP (type-3) length unknown    
32 DKEY-19J7
alt_ctg9_1_8
zK19J7
EPN details
BX649266.9
finished
33 CH211-278C10
alt_ctg9_1_8
zC278C10
EPN details
BX296542.12
finished
34 DKEY-58D5
alt_ctg9_1_8
zK58D5
EPN details
CR392332.8
finished
  GAP (type-3) length unknown    
36 CH211-212N6
alt_ctg9_1_9
zC212N6
EPN details
BX545855.16
finished
37 DKEY-46O18
alt_ctg9_1_9
zK46O18
EPN details
CR854911.14
finished
38 DKEY-189G17
alt_ctg9_1_9
zK189G17
EPN details
BX548053.7
finished
  GAP (type-3) length unknown    
40 DKEY-57B6
alt_ctg9_1_10
zK57B6
EPN details
CR392363.4
finished
41 CH211-14A14
alt_ctg9_1_10
zC14A14
EPN details
AL929090.4
finished
42 DKEY-155F10
alt_ctg9_1_10
zK155F10
EPN details
BX957274.8
finished
  GAP (type-3) length unknown    
44 DKEYP-74A11
alt_ctg9_1_11
zKp74A11
EPN details
CR545476.14
finished
45 DKEY-10D15
alt_ctg9_1_11
zK10D15
EPN details
BX247888.10
finished
46 DKEY-9G20
alt_ctg9_1_11
zK9G20
EPN details
CR538727.16
finished
  GAP (type-3) length unknown    
48 CH211-231D19
alt_ctg9_1_12
zC231D19
EPN details
BX936421.16
finished
49 CH211-241P24
alt_ctg9_1_12
zC241P24
EPN details
BX248498.5
finished
50 DKEY-52O2
alt_ctg9_1_12
zK52O2
EPN details
CR405716.10
finished
  GAP (type-3) length unknown    
52 DKEY-156H23
alt_ctg9_1_13
zK156H23
EPN details
BX005408.12
finished
53 CH211-188M3
alt_ctg9_1_13
zC188M3
EPN details
AL953877.5
finished
54 DKEY-193N17
alt_ctg9_1_13
zK193N17
EPN details
CR392351.12
finished
  GAP (type-3) length unknown    
56 DKEYP-117D6
alt_ctg9_1_14
Cl/Pr zKp117D6/bM84I16 swap
EPN details
CR936357.5
finished
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
EPN details
CR376856.9
finished
58 CH211-152N19
alt_ctg9_1_14
CONTAINED
zC152N19
EPN details
BX005146.4
finished
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
EPN details
CR376856.9
finished
  GAP (type-3) length unknown    
60 DKEY-90K7
alt_ctg9_1_15
zK90K7
EPN details
CR376862.19
finished
61 CH211-31O18
alt_ctg9_1_15
zC31O18
EPN details
BX004815.6
finished
62 DKEY-253E1
alt_ctg9_1_15
zK253E1
EPN details
CT573148.14
finished
  GAP (type-3) length unknown    
64 CH211-87M5
alt_ctg9_1_16
zC87M5
EPN details
BX001055.11
finished
65 CH211-225H17
alt_ctg9_1_16
zC225H17
EPN details
BX276095.7
finished
66 DKEY-177E22
alt_ctg9_1_16
zK177E22
EPN details
BX649396.3
finished
  GAP (type-3) length unknown    
68 DKEY-46K9
alt_ctg9_1_17
zK46K9
EPN details
BX537139.17
finished
69 CH211-189M4
alt_ctg9_1_17
zC189M4
EPN details
CU151883.12
finished
70 CH211-243C19
alt_ctg9_1_17
zC243C19
EPN details
CR753904.7
finished
  GAP (type-3) length unknown    
72 DKEY-21O13
alt_ctg9_1_18
zK21O13
EPN details
BX601644.6
finished
73 DKEY-255G14
alt_ctg9_1_18
zK255G14
EPN details
BX294188.11
finished
74 DKEY-205J8
alt_ctg9_1_18
zK205J8
EPN details
CR759897.12
finished
  GAP (type-3) length unknown    
76 DKEY-202N12
alt_ctg9_1_19
zK202N12
EPN details
CR759895.13
finished
77 CH211-225C13
alt_ctg9_1_19
zC225C13
EPN details
BX855621.15
finished
78 CH211-246M4
alt_ctg9_1_19
zC246M4
EPN details
AL807829.21
finished
  GAP (type-3) length unknown    
80 CH211-45C16
alt_ctg9_1_20
zC45C16
EPN details
CR753902.11
finished
81 RP71-27M6
alt_ctg9_1_20
bZ27M6
EPN details
BX322584.16
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 109390 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR407547.14 1 109390 +
109391 337844 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR385027.12 1 228454 -
337845 521090 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX571704.13 1 183246 -
521091 571090 4 N 50000 contig no
571091 631510 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX323049.20 1 60420 +
631511 824997 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX005088.4 1 193487 -
824998 897329 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX950210.10 15178 87509 +
897330 947329 8 N 50000 contig no
947330 1010928 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CT573248.10 81326 144924 -
1010929 1145519 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CU137641.6 1 134591 -
1145520 1228211 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 CR388074.9 1 82692 -
1228212 1452554 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AL954845.21 2001 226343 +
1452555 1608708 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 BX510646.5 44168 200321 +
1608709 1658708 14 N 50000 contig no
1658709 1701481 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR759785.7 1 42773 +
1701482 1930001 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CR388221.20 3461 231980 +
1930002 2049760 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL929161.10 1 119759 -
2049761 2099760 18 N 50000 contig no
2099761 2105502 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CU928124.3 1 5742 +
2105503 2313729 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX897687.7 1 208227 -
2313730 2442182 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CR361551.8 49154 177606 +
2442183 2492182 22 N 50000 contig no
2492183 2637417 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR762444.16 1 145235 +
2637418 2686286 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR936950.7 1 48869 +
2686287 2882531 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 BX510311.6 1 196245 -
2882532 2913929 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR456628.8 136704 168101 +
2913930 2963929 27 N 50000 contig no
2963930 2977965 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 BX511129.15 1 14036 +
2977966 3177793 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CU151884.5 291 200118 -
3177794 3271676 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CR392366.4 32016 125898 +
3271677 3321676 31 N 50000 contig no
3321677 3423865 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX649266.9 1 102189 +
3423866 3598749 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX296542.12 1 174884 +
3598750 3684769 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 CR392332.8 42531 128550 +
3684770 3734769 35 N 50000 contig no
3734770 3843588 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX545855.16 1 108819 +
3843589 4074866 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 CR854911.14 1 231278 -
4074867 4221562 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 38 BX548053.7 64135 210830 +
4221563 4271562 39 N 50000 contig no
4271563 4417184 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 CR392363.4 1 145622 +
4417185 4583374 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 AL929090.4 1477 167666 -
4583375 4708915 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 42 BX957274.8 91277 216817 +
4708916 4758915 43 N 50000 contig no
4758916 4931453 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 CR545476.14 1 172538 +
4931454 5120476 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 BX247888.10 1 189023 +
5120477 5258164 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 CR538727.16 17634 155321 +
5258165 5308164 47 N 50000 contig no
5308165 5355852 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX936421.16 59435 107122 -
5355853 5527200 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX248498.5 1 171348 +
5527201 5602191 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 CR405716.10 127542 202532 +
5602192 5652191 51 N 50000 contig no
5652192 5808833 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX005408.12 53566 210207 -
5808834 5960913 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL953877.5 1 152080 +
5960914 6041683 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CR392351.12 1 80770 -
6041684 6091683 55 N 50000 contig no
6091684 6130035 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR936357.5 1 38352 +
6130036 6130036 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR376856.9 2001 2001 +
6130037 6310894 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 BX005146.4 1 180858 +
6310895 6318737 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 59 CR376856.9 171211 179053 +
6318738 6368737 60 N 50000 contig no
6368738 6440014 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 CR376862.19 1 71277 +
6440015 6612913 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX004815.6 1 172899 +
6612914 6684774 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 CT573148.14 39300 111160 +
6684775 6734774 64 N 50000 contig no
6734775 6747503 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX001055.11 181690 194418 -
6747504 6944576 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX276095.7 177 197249 +
6944577 6954045 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX649396.3 37439 46907 +
6954046 7004045 68 N 50000 contig no
7004046 7246286 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 BX537139.17 1 242241 +
7246287 7393481 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CU151883.12 1 147195 -
7393482 7395475 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR753904.7 45422 47415 +
7395476 7445475 72 N 50000 contig no
7445476 7602943 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 BX601644.6 1 157468 +
7602944 7864886 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 BX294188.11 1 261943 +
7864887 8047663 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR759897.12 14146 196922 +
8047664 8097663 76 N 50000 contig no
8097664 8133173 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 CR759895.13 1 35510 +
8133174 8311316 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 BX855621.15 305 178447 +
8311317 8469181 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 AL807829.21 8250 166114 +
8469182 8519181 80 N 50000 contig no
8519182 8542536 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 82 CR753902.11 134875 158229 -
8542537 8686252 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 82 BX322584.16 1 143716 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-62A12
alt_ctg9_1_1
zK62A12
-
-
CR407547.14
finished
204067 DanioKey 3' / 3'
109390 / 228454
- / -
94677
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-13A17
alt_ctg9_1_1
zK13A17
-
-
CR385027.12
finished
228454 DanioKey 5' / 3'
1 / 183246
- / -
35819
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-33M14
alt_ctg9_1_1
zK33M14
-
-
BX571704.13
finished
219065 DanioKey        
  GAP (type-3) length unknown                  
5 DKEY-30L22
alt_ctg9_1_2
zK30L22
-
-
BX323049.20
finished
214040 DanioKey 3' / 3'
60420 / 193487
- / -
153622
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-160E15
alt_ctg9_1_2
zC160E15
-
-
BX005088.4
finished
193489 CHORI-211 5' / 5'
1 / 15178
- / -
15177
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH211-51O18
alt_ctg9_1_2
zC51O18
-
-
BX950210.10
finished
87509 CHORI-211        
  GAP (type-3) length unknown                  
9 DKEY-180E22
alt_ctg9_1_3
zK180E22
-
-
CT573248.10
finished
144924 DanioKey 5' / 3'
81326 / 134591
- / -
81688
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-190A12
alt_ctg9_1_3
zC190A12
-
-
CU137641.6
finished
134954 CHORI-211 5' / 3'
1 / 82692
- / -
5149
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-43F22
alt_ctg9_1_3
zC43F22
-
-
CR388074.9
finished
87841 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
12 DKEY-30H3
alt_ctg9_1_3
zK30H3
-
-
AL954845.21
finished
226343 DanioKey 3' / 5'
226343 / 44168
- / -
44167
0
Identified
2017-03-07
agp2oracle
humpub
 
13 CH211-221B16
alt_ctg9_1_3
zC221B16
-
-
BX510646.5
finished
200321 CHORI-211        
  GAP (type-3) length unknown                  
15 DKEY-179E14
alt_ctg9_1_4
zK179E14
-
-
CR759785.7
finished
51884 DanioKey 3' / 5'
42773 / 3461
- / -
12571
0
Identified
2017-03-07
agp2oracle
humpub
 
16 DKEY-18L16
alt_ctg9_1_4
zK18L16
-
-
CR388221.20
finished
231980 DanioKey 3' / 3'
231980 / 119759
- / -
77268
0
Identified
2017-03-07
agp2oracle
humpub
 
17 CH211-93A19
alt_ctg9_1_4
zC93A19
-
-
AL929161.10
finished
197027 CHORI-211        
  GAP (type-3) length unknown                  
19 CH1073-486C21
alt_ctg9_1_5
zFD486C21
-
-
CU928124.3
finished
7742 CHORI1073 3' / 3'
5742 / 208227
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
20 DKEY-151O8
alt_ctg9_1_5
zK151O8
-
-
BX897687.7
finished
208227 DanioKey 5' / 5'
1 / 49154
- / -
49153
0
Identified
2017-03-07
agp2oracle
humpub
 
21 CH211-224M9
alt_ctg9_1_5
zC224M9
-
-
CR361551.8
finished
177606 CHORI-211        
  GAP (type-3) length unknown                  
23 CH211-247J6
alt_ctg9_1_6
zC247J6
-
-
CR762444.16
finished
173620 CHORI-211 3' / 5'
145235 / 1
- / -
28385
0
Identified
2017-03-07
agp2oracle
humpub
 
24 CH211-58J23
alt_ctg9_1_6
zC58J23
-
-
CR936950.7
finished
48869 CHORI-211 3' / 3'
48869 / 196245
- / -
2000
0
Identified
2007-05-16
find_overl...
badger
 
25 CH211-235F16
alt_ctg9_1_6
zC235F16
-
-
BX510311.6
finished
198245 CHORI-211 5' / 5'
1 / 136704
- / -
136703
0
Identified
2017-03-07
agp2oracle
humpub
 
26 CH211-157H7
alt_ctg9_1_6
zC157H7
-
-
CR456628.8
finished
168101 CHORI-211        
  GAP (type-3) length unknown                  
28 RP71-68N21
alt_ctg9_1_7
bZ68N21
-
-
BX511129.15
finished
152922 RPCI-71 3' / 3'
14036 / 200118
- / -
138886
0
Identified
2017-03-07
agp2oracle
humpub
 
29 CH211-196H1
alt_ctg9_1_7
zC196H1
-
-
CU151884.5
finished
200118 CHORI-211 5' / 5'
291 / 32016
- / -
32305
0
Identified
2017-03-07
agp2oracle
humpub
 
30 DKEY-51D17
alt_ctg9_1_7
zK51D17
-
-
CR392366.4
finished
125898 DanioKey        
  GAP (type-3) length unknown                  
32 DKEY-19J7
alt_ctg9_1_8
zK19J7
-
-
BX649266.9
finished
235135 DanioKey 3' / 5'
102189 / 1
- / -
132946
0
Identified
2017-03-07
agp2oracle
humpub
 
33 CH211-278C10
alt_ctg9_1_8
zC278C10
-
-
BX296542.12
finished
174884 CHORI-211 3' / 5'
174884 / 42531
- / -
42530
0
Identified
2017-03-07
agp2oracle
humpub
 
34 DKEY-58D5
alt_ctg9_1_8
zK58D5
-
-
CR392332.8
finished
128550 DanioKey        
  GAP (type-3) length unknown                  
36 CH211-212N6
alt_ctg9_1_9
zC212N6
-
-
BX545855.16
finished
204962 CHORI-211 3' / 3'
108819 / 231278
- / -
98387
0
Identified
2017-03-07
agp2oracle
humpub
 
37 DKEY-46O18
alt_ctg9_1_9
zK46O18
-
-
CR854911.14
finished
233522 DanioKey 5' / 5'
1 / 64135
- / -
64134
0
Identified
2017-03-07
agp2oracle
humpub
 
38 DKEY-189G17
alt_ctg9_1_9
zK189G17
-
-
BX548053.7
finished
210830 DanioKey        
  GAP (type-3) length unknown                  
40 DKEY-57B6
alt_ctg9_1_10
zK57B6
-
-
CR392363.4
finished
236488 DanioKey 3' / 3'
145622 / 167666
- / -
101277
0
Identified
2017-03-07
agp2oracle
humpub
 
41 CH211-14A14
alt_ctg9_1_10
zC14A14
-
-
AL929090.4
finished
178077 CHORI-211 5' / 5'
1477 / 91277
- / -
92752
0
Identified
2017-03-07
agp2oracle
humpub
 
42 DKEY-155F10
alt_ctg9_1_10
zK155F10
-
-
BX957274.8
finished
216817 DanioKey        
  GAP (type-3) length unknown                  
44 DKEYP-74A11
alt_ctg9_1_11
zKp74A11
-
-
CR545476.14
finished
202562 DanioKeypilot 3' / 5'
172538 / 1
- / -
30024
0
Identified
2017-03-07
agp2oracle
humpub
 
45 DKEY-10D15
alt_ctg9_1_11
zK10D15
-
-
BX247888.10
finished
223425 DanioKey 3' / 5'
189023 / 17634
- / -
52035
0
Identified
2017-03-07
agp2oracle
humpub
 
46 DKEY-9G20
alt_ctg9_1_11
zK9G20
-
-
CR538727.16
finished
155321 DanioKey        
  GAP (type-3) length unknown                  
48 CH211-231D19
alt_ctg9_1_12
zC231D19
-
-
BX936421.16
finished
107122 CHORI-211 5' / 5'
59435 / 1
- / -
59434
0
Identified
2017-03-07
agp2oracle
humpub
 
49 CH211-241P24
alt_ctg9_1_12
zC241P24
-
-
BX248498.5
finished
171348 CHORI-211 3' / 5'
171348 / 127542
- / -
127541
0
Identified
2017-03-07
agp2oracle
humpub
 
50 DKEY-52O2
alt_ctg9_1_12
zK52O2
-
-
CR405716.10
finished
202532 DanioKey        
  GAP (type-3) length unknown                  
52 DKEY-156H23
alt_ctg9_1_13
zK156H23
-
-
BX005408.12
finished
210207 DanioKey 5' / 5'
53566 / 1
- / -
53565
0
Identified
2017-03-07
agp2oracle
humpub
 
53 CH211-188M3
alt_ctg9_1_13
zC188M3
-
-
AL953877.5
finished
152080 CHORI-211 3' / 3'
152080 / 80770
- / -
12697
0
Identified
2017-03-07
agp2oracle
humpub
 
54 DKEY-193N17
alt_ctg9_1_13
zK193N17
-
-
CR392351.12
finished
93467 DanioKey        
  GAP (type-3) length unknown                  
56 DKEYP-117D6
alt_ctg9_1_14
zKp117D6
-
-
CR936357.5
finished
38352 DanioKeypilot 3' / 5'
38352 / 2001
- / -
2000
0
Identified
2017-09-19
agp2oracle
humpub
 
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
-
-
CR376856.9
finished
179053 CHORI-211 3' / 5'
2001 / 1
- / -
180858
0
Identified
2017-03-07
agp2oracle
humpub
 
58 CH211-152N19
alt_ctg9_1_14
CONTAINED
zC152N19
-
-
BX005146.4
finished
180858 CHORI-211 3' / 5'
180858 / 171211
- / -
180858
0
Identified
2017-03-07
agp2oracle
humpub
 
57 CH211-11O22
alt_ctg9_1_14
CONTAINER
zC11O22
-
-
CR376856.9
finished
179053 CHORI-211        
  GAP (type-3) length unknown                  
60 DKEY-90K7
alt_ctg9_1_15
zK90K7
-
-
CR376862.19
finished
81403 DanioKey 3' / 5'
71277 / 1
- / -
10126
0
Identified
2017-03-07
agp2oracle
humpub
 
61 CH211-31O18
alt_ctg9_1_15
zC31O18
-
-
BX004815.6
finished
172899 CHORI-211 3' / 5'
172899 / 39300
- / -
39299
0
Identified
2017-03-07
agp2oracle
humpub
 
62 DKEY-253E1
alt_ctg9_1_15
zK253E1
-
-
CT573148.14
finished
111160 DanioKey        
  GAP (type-3) length unknown                  
64 CH211-87M5
alt_ctg9_1_16
zC87M5
-
-
BX001055.11
finished
194418 CHORI-211 5' / 5'
181690 / 177
- / -
181865
0
Identified
2017-03-07
agp2oracle
humpub
 
65 CH211-225H17
alt_ctg9_1_16
zC225H17
-
-
BX276095.7
finished
197554 CHORI-211 3' / 5'
197249 / 37439
- / -
37743
0
Identified
2017-03-07
agp2oracle
humpub
 
66 DKEY-177E22
alt_ctg9_1_16
zK177E22
-
-
BX649396.3
finished
46907 DanioKey        
  GAP (type-3) length unknown                  
68 DKEY-46K9
alt_ctg9_1_17
zK46K9
-
-
BX537139.17
finished
243063 DanioKey 3' / 3'
242241 / 147195
- / -
823
0
Identified
2017-03-07
agp2oracle
humpub
 
69 CH211-189M4
alt_ctg9_1_17
zC189M4
-
-
CU151883.12
finished
147196 CHORI-211 5' / 5'
1 / 45422
- / -
45421
0
Identified
2017-03-07
agp2oracle
humpub
 
70 CH211-243C19
alt_ctg9_1_17
zC243C19
-
-
CR753904.7
finished
47415 CHORI-211        
  GAP (type-3) length unknown                  
72 DKEY-21O13
alt_ctg9_1_18
zK21O13
-
-
BX601644.6
finished
217065 DanioKey 3' / 5'
157468 / 1
- / -
59597
0
Identified
2017-03-07
agp2oracle
humpub
 
73 DKEY-255G14
alt_ctg9_1_18
zK255G14
-
-
BX294188.11
finished
261943 DanioKey 3' / 5'
261943 / 14146
- / -
14145
0
Identified
2017-03-07
agp2oracle
humpub
 
74 DKEY-205J8
alt_ctg9_1_18
zK205J8
-
-
CR759897.12
finished
196922 DanioKey        
  GAP (type-3) length unknown                  
76 DKEY-202N12
alt_ctg9_1_19
zK202N12
-
-
CR759895.13
finished
113145 DanioKey 3' / 5'
35510 / 305
- / -
77939
0
Identified
2017-03-07
agp2oracle
humpub
 
77 CH211-225C13
alt_ctg9_1_19
zC225C13
-
-
BX855621.15
finished
178447 CHORI-211 3' / 5'
178447 / 8250
- / -
8249
0
Identified
2017-03-07
agp2oracle
humpub
 
78 CH211-246M4
alt_ctg9_1_19
zC246M4
-
-
AL807829.21
finished
166114 CHORI-211        
  GAP (type-3) length unknown                  
80 CH211-45C16
alt_ctg9_1_20
zC45C16
-
-
CR753902.11
finished
158229 CHORI-211 5' / 3'
134875 / 143716
- / -
135885
0
Identified
2017-03-07
agp2oracle
humpub
 
81 RP71-27M6
alt_ctg9_1_20
bZ27M6
-
-
BX322584.16
finished
144727 RPCI-71        

Statistics

Help

Clone Summary

Number of gaps
19
Gap types
type-3
19
Total clones
62
Clone HTGS Phases
finished
62
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,569,036
Total finished length of fin clones w/ overlap
10,297,445
Total finished length of fin clones w/o overlap
7,728,409
Total overlap length of fin+unfin clones
2,569,036
Total finished length of fin+unfin clones w/ overlap
10,297,445
Total finished length of fin+unfin clones w/o overlap
7,728,409

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