ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__U (TPF updated: 2017-03-31)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1
alt_ctgUn_1_1
CABZ01059912
CABZ01059912.1
finished
2 CH73-378F1
alt_ctgUn_1_1
zH378F1
EPN details
FO904885.1
contiguous
3
alt_ctgUn_1_1
CABZ01059916
CABZ01059916.1
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 12840 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CABZ01059912.1 1 12840 +
12841 96622 2 A FO904885.1 20533 104314 -
96623 107333 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CABZ01059916.1 1 10711 +

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
alt_ctgUn_1_1
CABZ01059912
-
-
CABZ01059912.1
finished
39994 - 3' / 3'
12840 / 104314
- / -
27154
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH73-378F1
alt_ctgUn_1_1
zH378F1
-
-
FO904885.1
contiguous
104314 CHORI-73 5' / 5'
20533 / 1
- / -
20532
0
Identified
2017-03-07
agp2oracle
humpub
 
3
alt_ctgUn_1_1
CABZ01059916
-
-
CABZ01059916.1
finished
10711 -        

Statistics

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Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
contiguous
1
finished
2
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
50,705
Total finished length of fin clones w/o overlap
50,705
Total overlap length of fin+unfin clones
47,686
Total finished length of fin+unfin clones w/ overlap
155,019
Total finished length of fin+unfin clones w/o overlap
107,333

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