ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__2 (TPF updated: 2018-01-16)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1
alt_ctg2_1_1
CABZ01112449
CABZ01112449.1
finished
2 CH211-93J11
alt_ctg2_1_1
zC93J11
EPN details
CR356234.11
finished
3 DKEY-149I17
alt_ctg2_1_1
zK149I17
EPN details
CR769774.8
finished
  GAP (type-3) length unknown    
5 CH211-284O19
alt_ctg2_1_2
zC284O19
EPN details
AL954692.9
finished
6 DKEY-176A22
alt_ctg2_1_2
zK176A22
EPN details
BX649316.9
finished
  GAP (type-3) length unknown    
8 DKEY-75G22
alt_ctg2_1_3
zK75G22
EPN details
CR376839.12
finished
9 CH211-191G24
alt_ctg2_1_3
zC191G24
EPN details
BX465202.4
finished
10 CH211-209D21
alt_ctg2_1_3
zC209D21
EPN details
BX324001.6
finished
11 CH73-170I24
alt_ctg2_1_3
zH170I24
EPN details
FP015916.6
finished
  GAP (type-3) length unknown    
13 ZFOS-477D9
alt_ctg2_1_4
zF477D9
EPN details
FO834798.1
contiguous
14 DKEY-99O18
alt_ctg2_1_4
zK99O18
EPN details
BX666062.6
finished
15 DKEY-177B16
alt_ctg2_1_4
zK177B16
EPN details
BX649495.8
finished
16 CH211-119O8
alt_ctg2_1_4
zC119O8
EPN details
AL953896.11
finished
  GAP (type-3) length unknown    
18 DKEYP-55C8
alt_ctg2_1_5
zKp55C8
EPN details
BX322588.8
finished
19 DKEYP-20F6
alt_ctg2_1_5
zKp20F6
EPN details
BX322607.6
finished
20 DKEYP-90G12
alt_ctg2_1_5
zKp90G12
EPN details
BX677675.9
finished
  GAP (type-3) length unknown    
22 CH211-165P5
alt_ctg2_1_6
zC165P5
EPN details
AL935063.7
finished
23 DKEYP-16G7
alt_ctg2_1_6
zKp16G7
EPN details
BX294123.12
finished
24 CH211-16K18
alt_ctg2_1_6
zC16K18
EPN details
CR354538.29
finished
  GAP (type-3) length unknown    
26 DKEYP-64A3
alt_ctg2_1_7
zKp64A3
EPN details
CR392032.9
finished
27 CH211-220F13
alt_ctg2_1_7
zC220F13
EPN details
BX005083.10
finished
  GAP (type-3) length unknown    
29 DKEY-178O23
alt_ctg2_1_8
zK178O23
EPN details
CU076109.8
finished
30 CH211-66B9
alt_ctg2_1_8
CONTAINER
zC66B9
EPN details
BX511268.5
finished
31 CH211-119H23
alt_ctg2_1_8
CONTAINED
zC119H23
EPN details
BX005444.14
finished
30 CH211-66B9
alt_ctg2_1_8
CONTAINER
zC66B9
EPN details
BX511268.5
finished
  GAP (type-3) length unknown    
33 CH73-56L10
alt_ctg2_1_9
zH56L10
EPN details
CU571082.5
finished
34 CH211-252B2
alt_ctg2_1_9
zC252B2
EPN details
AL935192.10
finished
35 CH211-193C7
alt_ctg2_1_9
zC193C7
EPN details
AL929116.4
finished
36 CH211-265G22
alt_ctg2_1_9
zC265G22
EPN details
BX005060.12
finished
  GAP (type-3) length unknown    
38 CH211-153N15
alt_ctg2_1_10
zC153N15
EPN details
CR407590.8
finished
39 CH211-194I14
alt_ctg2_1_10
zC194I14
EPN details
CU179700.9
finished
40 CH211-66K16
alt_ctg2_1_10
zC66K16
EPN details
BX005331.8
finished
  GAP (type-3) length unknown    
42 CH211-77G15
alt_ctg2_1_11
zC77G15
EPN details
BX548047.12
finished
43 CH211-6M6
alt_ctg2_1_11
zC6M6
EPN details
AL954820.11
finished
44 DKEYP-12A9
alt_ctg2_1_11
zKp12A9
EPN details
BX677676.6
finished
  GAP (type-3) length unknown    
46 CH211-106N13
alt_ctg2_1_12
zC106N13
EPN details
BX005176.8
finished
47 DKEYP-32C3
alt_ctg2_1_12
zKp32C3
EPN details
BX296527.6
finished
48 CH211-120F16
alt_ctg2_1_12
zC120F16
EPN details
BX927101.19
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 11212 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CABZ01112449.1 1 11212 +
11213 152624 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR356234.11 10156 151567 -
152625 330156 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR769774.8 1 177532 -
330157 380156 4 N 50000 contig no
380157 412087 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AL954692.9 69747 101677 -
412088 496768 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX649316.9 1 84681 -
496769 546768 7 N 50000 contig no
546769 672139 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 11 CR376839.12 1 125371 +
672140 842910 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 11 BX465202.4 1 170771 -
842911 988594 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 11 BX324001.6 1 145684 -
988595 1052488 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 11 FP015916.6 42285 106178 +
1052489 1102488 12 N 50000 contig no
1102489 1123177 13 A FO834798.1 1 20689 +
1123178 1356665 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX666062.6 1 233488 +
1356666 1436370 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX649495.8 2001 81705 +
1436371 1523805 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 AL953896.11 70584 158018 +
1523806 1573805 17 N 50000 contig no
1573806 1585089 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX322588.8 181358 192641 -
1585090 1752582 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX322607.6 1 167493 -
1752583 1870278 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX677675.9 6606 124301 +
1870279 1920278 21 N 50000 contig no
1920279 1958076 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AL935063.7 1 37798 +
1958077 2126435 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX294123.12 1 168359 +
2126436 2191743 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CR354538.29 1 65308 -
2191744 2241743 25 N 50000 contig no
2241744 2433392 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CR392032.9 1 191649 +
2433393 2583295 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX005083.10 1 149903 -
2583296 2633295 28 N 50000 contig no
2633296 2730739 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 CU076109.8 1 97444 +
2730740 2730740 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 BX511268.5 2047 2047 +
2730741 2899719 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 BX005444.14 1 168979 -
2899720 2903641 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 BX511268.5 163146 167067 +
2903642 2953641 33 N 50000 contig no
2953642 2967771 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 CU571082.5 47381 61510 -
2967772 3160420 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 AL935192.10 1 192649 +
3160421 3285756 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 AL929116.4 1 125336 -
3285757 3320236 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 BX005060.12 1 34480 -
3320237 3370236 38 N 50000 contig no
3370237 3523210 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 CR407590.8 1 152974 +
3523211 3732893 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 CU179700.9 2 209684 -
3732894 3753641 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 BX005331.8 165672 186419 +
3753642 3803641 42 N 50000 contig no
3803642 3866594 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 BX548047.12 1 62953 +
3866595 4055255 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AL954820.11 1 188661 -
4055256 4107464 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 BX677676.6 117093 169301 +
4107465 4157464 46 N 50000 contig no
4157465 4318464 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 BX005176.8 10997 171996 -
4318465 4504170 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 BX296527.6 1 185706 -
4504171 4558153 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 BX927101.19 108163 162145 +

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
alt_ctg2_1_1
CABZ01112449
-
-
CABZ01112449.1
finished
40817 - 3' / 3'
11212 / 151567
- / -
29605
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-93J11
alt_ctg2_1_1
zC93J11
-
-
CR356234.11
finished
151567 CHORI-211 5' / 3'
10156 / 177532
- / -
44259
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-149I17
alt_ctg2_1_1
zK149I17
-
-
CR769774.8
finished
211636 DanioKey        
  GAP (type-3) length unknown                  
5 CH211-284O19
alt_ctg2_1_2
zC284O19
-
-
AL954692.9
finished
101677 CHORI-211 5' / 3'
69747 / 84681
- / -
69746
0
Identified
2017-03-07
agp2oracle
humpub
 
6 DKEY-176A22
alt_ctg2_1_2
zK176A22
-
-
BX649316.9
finished
84681 DanioKey        
  GAP (type-3) length unknown                  
8 DKEY-75G22
alt_ctg2_1_3
zK75G22
-
-
CR376839.12
finished
127371 DanioKey 3' / 3'
125371 / 170771
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
9 CH211-191G24
alt_ctg2_1_3
zC191G24
-
-
BX465202.4
finished
170771 CHORI-211 5' / 3'
1 / 145684
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-209D21
alt_ctg2_1_3
zC209D21
-
-
BX324001.6
finished
147684 CHORI-211 5' / 5'
1 / 42285
- / -
42284
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH73-170I24
alt_ctg2_1_3
zH170I24
-
-
FP015916.6
finished
106178 CHORI-73        
  GAP (type-3) length unknown                  
13 ZFOS-477D9
alt_ctg2_1_4
zF477D9
-
-
FO834798.1
contiguous
39350 ZFISHFOS 3' / 5'
20689 / 1
- / -
18661
0
Identified
2017-03-07
agp2oracle
humpub
 
14 DKEY-99O18
alt_ctg2_1_4
zK99O18
-
-
BX666062.6
finished
233488 DanioKey 3' / 5'
233488 / 2001
- / -
2000
0
Identified
2004-08-14
find_overl...
badger
 
15 DKEY-177B16
alt_ctg2_1_4
zK177B16
-
-
BX649495.8
finished
81705 DanioKey 3' / 5'
81705 / 70584
- / -
70583
0
Identified
2017-03-07
agp2oracle
humpub
 
16 CH211-119O8
alt_ctg2_1_4
zC119O8
-
-
AL953896.11
finished
158018 CHORI-211        
  GAP (type-3) length unknown                  
18 DKEYP-55C8
alt_ctg2_1_5
zKp55C8
-
-
BX322588.8
finished
192641 DanioKeypilot 5' / 3'
181358 / 167493
- / -
181357
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEYP-20F6
alt_ctg2_1_5
zKp20F6
-
-
BX322607.6
finished
167493 DanioKeypilot 5' / 5'
1 / 6606
- / -
6605
0
Identified
2017-03-07
agp2oracle
humpub
 
20 DKEYP-90G12
alt_ctg2_1_5
zKp90G12
-
-
BX677675.9
finished
124301 DanioKeypilot        
  GAP (type-3) length unknown                  
22 CH211-165P5
alt_ctg2_1_6
zC165P5
-
-
AL935063.7
finished
141819 CHORI-211 3' / 5'
37798 / 1
- / -
104021
0
Identified
2017-03-07
agp2oracle
humpub
 
23 DKEYP-16G7
alt_ctg2_1_6
zKp16G7
-
-
BX294123.12
finished
168359 DanioKeypilot 3' / 3'
168359 / 65308
- / -
65967
0
Identified
2017-03-07
agp2oracle
humpub
 
24 CH211-16K18
alt_ctg2_1_6
zC16K18
-
-
CR354538.29
finished
131275 CHORI-211        
  GAP (type-3) length unknown                  
26 DKEYP-64A3
alt_ctg2_1_7
zKp64A3
-
-
CR392032.9
finished
191649 DanioKeypilot 3' / 3'
191649 / 149903
- / -
62178
0
Identified
2017-03-07
agp2oracle
humpub
 
27 CH211-220F13
alt_ctg2_1_7
zC220F13
-
-
BX005083.10
finished
212081 CHORI-211        
  GAP (type-3) length unknown                  
29 DKEY-178O23
alt_ctg2_1_8
zK178O23
-
-
CU076109.8
finished
97444 DanioKey 3' / 5'
97444 / 2047
- / -
2046
0
Identified
2018-01-16
agp2oracle
humpub
 
30 CH211-66B9
alt_ctg2_1_8
CONTAINER
zC66B9
-
-
BX511268.5
finished
167067 CHORI-211 3' / 3'
2047 / 168979
- / -
168979
0
Identified
2017-03-07
agp2oracle
humpub
 
31 CH211-119H23
alt_ctg2_1_8
CONTAINED
zC119H23
-
-
BX005444.14
finished
168979 CHORI-211 5' / 5'
1 / 163146
- / -
168979
0
Identified
2017-03-07
agp2oracle
humpub
 
30 CH211-66B9
alt_ctg2_1_8
CONTAINER
zC66B9
-
-
BX511268.5
finished
167067 CHORI-211        
  GAP (type-3) length unknown                  
33 CH73-56L10
alt_ctg2_1_9
zH56L10
-
-
CU571082.5
finished
61510 CHORI-73 5' / 5'
47381 / 1
- / -
47380
0
Identified
2017-03-07
agp2oracle
humpub
 
34 CH211-252B2
alt_ctg2_1_9
zC252B2
-
-
AL935192.10
finished
192649 CHORI-211 3' / 3'
192649 / 125336
- / -
787
0
Identified
2017-03-07
agp2oracle
humpub
 
35 CH211-193C7
alt_ctg2_1_9
zC193C7
-
-
AL929116.4
finished
126123 CHORI-211 5' / 3'
1 / 34480
- / -
64032
0
Identified
2017-03-07
agp2oracle
humpub
 
36 CH211-265G22
alt_ctg2_1_9
zC265G22
-
-
BX005060.12
finished
98512 CHORI-211        
  GAP (type-3) length unknown                  
38 CH211-153N15
alt_ctg2_1_10
zC153N15
-
-
CR407590.8
finished
167238 CHORI-211 3' / 3'
152974 / 209684
- / -
14264
0
Identified
2017-03-07
agp2oracle
humpub
 
39 CH211-194I14
alt_ctg2_1_10
zC194I14
-
-
CU179700.9
finished
209684 CHORI-211 5' / 5'
2 / 165672
- / -
165672
0
Identified
2017-03-07
agp2oracle
humpub
 
40 CH211-66K16
alt_ctg2_1_10
zC66K16
-
-
BX005331.8
finished
186419 CHORI-211        
  GAP (type-3) length unknown                  
42 CH211-77G15
alt_ctg2_1_11
zC77G15
-
-
BX548047.12
finished
179092 CHORI-211 3' / 3'
62953 / 188661
- / -
116139
0
Identified
2017-03-07
agp2oracle
humpub
 
43 CH211-6M6
alt_ctg2_1_11
zC6M6
-
-
AL954820.11
finished
188661 CHORI-211 5' / 5'
1 / 117093
- / -
117092
0
Identified
2017-03-07
agp2oracle
humpub
 
44 DKEYP-12A9
alt_ctg2_1_11
zKp12A9
-
-
BX677676.6
finished
169301 DanioKeypilot        
  GAP (type-3) length unknown                  
46 CH211-106N13
alt_ctg2_1_12
zC106N13
-
-
BX005176.8
finished
171996 CHORI-211 5' / 3'
10997 / 185706
- / -
10996
0
Identified
2017-03-07
agp2oracle
humpub
 
47 DKEYP-32C3
alt_ctg2_1_12
zKp32C3
-
-
BX296527.6
finished
185706 DanioKeypilot 5' / 5'
1 / 108163
- / -
108162
0
Identified
2017-03-07
agp2oracle
humpub
 
48 CH211-120F16
alt_ctg2_1_12
zC120F16
-
-
BX927101.19
finished
162145 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
11
Gap types
type-3
11
Total clones
37
Clone HTGS Phases
contiguous
1
finished
36
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,494,149
Total finished length of fin clones w/ overlap
5,477,737
Total finished length of fin clones w/o overlap
3,983,588
Total overlap length of fin+unfin clones
1,512,810
Total finished length of fin+unfin clones w/ overlap
5,517,087
Total finished length of fin+unfin clones w/o overlap
4,004,277

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