ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__24 (TPF updated: 2017-12-14)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-65O9
alt_ctg24_1_1
CONTAINER
zK65O9
AL935306.6
finished
2 CH211-129O15
alt_ctg24_1_1
CONTAINED
zC129O15
CR388379.15
finished
1 DKEY-65O9
alt_ctg24_1_1
CONTAINER
zK65O9
AL935306.6
finished
  GAP (type-3) length unknown    
4 DKEY-189E1
alt_ctg24_1_2
zK189E1
CR753886.11
finished
5 DKEY-12L12
alt_ctg24_1_2
CONTAINER
zK12L12
BX005057.8
finished
6 DKEY-23M15
alt_ctg24_1_2
CONTAINED
zK23M15
CR381573.14
finished
5 DKEY-12L12
alt_ctg24_1_2
CONTAINER
zK12L12
BX005057.8
finished
  GAP (type-3) length unknown    
8 DKEY-281A10
alt_ctg24_1_3
zK281A10
CT737210.9
finished
9 CH211-124I7
alt_ctg24_1_3
zC124I7
CU151878.25
finished
10 CH211-280A10
alt_ctg24_1_3
zC280A10
CU929203.10
finished
  GAP (type-3) length unknown    
12 DKEYP-28D2
alt_ctg24_1_4
zKp28D2
CR405710.10
finished
13 DKEY-9O22
alt_ctg24_1_4
zK9O22
BX247906.8
finished
14 DKEY-11P5
alt_ctg24_1_4
zK11P5
CU041413.4
finished
  GAP (type-3) length unknown    
16 DKEY-19O24
alt_ctg24_1_5
zK19O24
BX510326.11
finished
17 CH211-14N18
alt_ctg24_1_5
zC14N18
BX537140.3
finished
18 DKEY-237J21
alt_ctg24_1_5
zK237J21
BX469920.6
finished
  GAP (type-3) length unknown    
20 DKEY-73N8
alt_ctg24_1_6
zK73N8
BX927064.8
finished
21 CH211-264G11
alt_ctg24_1_6
zC264G11
CR847969.6
finished
22 CH211-79M10
alt_ctg24_1_6
zC79M10
CR376786.25
finished
  GAP (type-3) length unknown    
24 CH211-72H10
alt_ctg24_1_7
zC72H10
CT573301.7
finished
25 CH211-234A12
alt_ctg24_1_7
zC234A12
BX323052.5
finished
26 CH73-93K15
alt_ctg24_1_7
zH93K15
CU929332.8
finished
  GAP (type-3) length unknown    
28 CH73-376K6
alt_ctg24_1_8
zH376K6
CU927887.4
finished
29 DKEY-18L4
alt_ctg24_1_8
zK18L4
CR354591.13
finished
30 CH211-144A4
alt_ctg24_1_8
zC144A4
CR392367.6
finished
31 CH211-140B10
alt_ctg24_1_8
zC140B10
BX571696.7
finished
  GAP (type-3) length unknown    
33 DKEY-33C18
alt_ctg24_1_9
zK33C18
CR352265.10
finished
34 DKEY-197K13
alt_ctg24_1_9
zK197K13
CR753885.7
finished
35 RP71-1F1
alt_ctg24_1_9
bZ1F1
AL627129.8
finished
  GAP (type-3) length unknown    
37 DKEY-147B12
alt_ctg24_1_10
zK147B12
CU466273.9
finished
38 DKEY-53I6
alt_ctg24_1_10
zK53I6
BX005411.8
finished
39 CH211-182K2
alt_ctg24_1_10
zC182K2
BX005067.6
finished
40 DKEY-106N13
alt_ctg24_1_10
zK106N13
CT573489.5
finished
  GAP (type-3) length unknown    
42 CH211-230K8
alt_ctg24_1_11
zC230K8
BX957228.13
finished
43 CH211-281M5
alt_ctg24_1_11
zC281M5
AL974313.6
finished
44 DKEY-7N6
alt_ctg24_1_11
zK7N6
BX942812.12
finished
  GAP (type-3) length unknown    
46 CH211-118E10
alt_ctg24_1_12
zC118E10
CR352255.9
finished
47 CH211-122G18
alt_ctg24_1_12
zC122G18
CR361560.10
finished
  GAP (type-3) length unknown    
49 CH211-80N22
alt_ctg24_1_13
zC80N22
CT574587.12
finished
50 CH211-208O6
alt_ctg24_1_13
zC208O6
BX248581.17
finished
51 DKEY-226L10
alt_ctg24_1_13
zK226L10
BX649452.4
finished
  GAP (type-3) length unknown    
53 DKEY-108D10
alt_ctg24_1_14
zK108D10
CR936282.7
finished
54 CH211-202E9
alt_ctg24_1_14
zC202E9
CT476804.7
finished
55 DKEY-150O13
alt_ctg24_1_14
zK150O13
CR352209.10
finished
  GAP (type-3) length unknown    
57 DKEY-181H23
alt_ctg24_1_15
zK181H23
BX571689.20
finished
58 CH211-186F16
alt_ctg24_1_15
zC186F16
BX005291.6
finished
59 DKEY-25O1
alt_ctg24_1_15
zK25O1
CR383669.17
finished
  GAP (type-3) length unknown    
61 DKEY-39F23
alt_ctg24_1_16
zK39F23
CR352262.24
finished
62 DKEY-189O24
alt_ctg24_1_16
zK189O24
CR376733.10
finished
63 CH211-135P4
alt_ctg24_1_16
zC135P4
CR933789.5
finished
  GAP (type-3) length unknown    
65 CH73-367C9
alt_ctg24_1_17
zH367C9
CU694811.8
finished
66 CH211-244M18
alt_ctg24_1_17
zC244M18
CR847905.23
finished
67 CH73-165P10
alt_ctg24_1_17
zH165P10
CT955984.6
finished
  GAP (type-3) length unknown    
69 CH211-236J5
alt_ctg24_1_18
zC236J5
CR933730.7
finished
70 DKEY-72L5
alt_ctg24_1_18
zK72L5
CR762409.6
finished
71 CH211-190F24
alt_ctg24_1_18
zC190F24
BX548035.8
finished
  GAP (type-3) length unknown    
73 DKEYP-25A6
alt_ctg24_1_19
zKp25A6
BX323068.15
finished
74 CH211-232J10
alt_ctg24_1_19
zC232J10
CT574572.8
finished
75 CH211-189O17
alt_ctg24_1_19
zC189O17
BX682238.10
finished
  GAP (type-3) length unknown    
77 DKEY-266I18
alt_ctg24_1_20
zK266I18
CR384099.7
finished
78 DKEY-206F22
alt_ctg24_1_20
zK206F22
CT573294.7
finished
79 CH211-176P17
alt_ctg24_1_20
zC176P17
CT583666.9
finished
  GAP (type-3) length unknown    
81 CH211-153C20
alt_ctg24_1_21
zC153C20
AL772148.6
finished
82 CH211-254P12
alt_ctg24_1_21
zC254P12
BX294098.11
finished
83 CH211-248L17
alt_ctg24_1_21
zC248L17
BX294095.13
finished
  GAP (type-3) length unknown    
85 CH211-24N20
alt_ctg24_1_22
zC24N20
CU929259.18
finished
86 CH1073-161D24
alt_ctg24_1_22
zFD161D24
FO904953.3
contiguous
87 CH211-198C1
alt_ctg24_1_22
zC198C1
CU633479.20
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 2347 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935306.6 1 2347 +
2348 152154 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388379.15 1 149807 -
152155 212406 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935306.6 146932 207183 +
212407 262406 4 N 50000 contig no
262407 405383 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR753886.11 1 142977 -
405384 411817 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX005057.8 2001 8434 +
411818 527182 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR381573.14 1 115365 -
527183 654577 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX005057.8 111231 238625 +
654578 704577 9 N 50000 contig no
704578 747072 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CT737210.9 1 42495 +
747073 906123 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CU151878.25 1 159051 +
906124 932482 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CU929203.10 1 26359 -
932483 982482 13 N 50000 contig no
982483 1000666 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 CR405710.10 1 18184 +
1000667 1214583 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX247906.8 1 213917 +
1214584 1266174 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 CU041413.4 29214 80804 +
1266175 1316174 17 N 50000 contig no
1316175 1445060 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX510326.11 110513 239398 -
1445061 1623744 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX537140.3 394 179077 -
1623745 1672831 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX469920.6 1 49087 -
1672832 1722831 21 N 50000 contig no
1722832 1890581 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX927064.8 14009 181758 -
1890582 2005610 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CR847969.6 1638 116666 +
2005611 2039787 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CR376786.25 1 34177 -
2039788 2089787 25 N 50000 contig no
2089788 2100396 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 CT573301.7 1 10609 +
2100397 2274289 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX323052.5 1 173893 -
2274290 2301577 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 CU929332.8 46852 74139 +
2301578 2351577 29 N 50000 contig no
2351578 2397653 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CU927887.4 55314 101389 -
2397654 2615967 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR354591.13 1 218314 -
2615968 2746277 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR392367.6 35244 165553 -
2746278 2829298 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 BX571696.7 88155 171175 +
2829299 2879298 34 N 50000 contig no
2879299 3005430 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 CR352265.10 1 126132 +
3005431 3151302 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 CR753885.7 1 145872 -
3151303 3180512 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AL627129.8 112685 141894 +
3180513 3230512 38 N 50000 contig no
3230513 3299146 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 42 CU466273.9 1 68634 +
3299147 3418294 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 42 BX005411.8 1 119148 -
3418295 3571209 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 42 BX005067.6 7778 160692 -
3571210 3582460 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 42 CT573489.5 11976 23226 +
3582461 3632460 43 N 50000 contig no
3632461 3652851 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 BX957228.13 125988 146378 -
3652852 3838016 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 AL974313.6 1 185165 -
3838017 4020704 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 BX942812.12 1 182688 -
4020705 4070704 47 N 50000 contig no
4070705 4231925 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CR352255.9 1 161221 -
4231926 4288357 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CR361560.10 1 56432 -
4288358 4338357 50 N 50000 contig no
4338358 4445838 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 CT574587.12 1 107481 +
4445839 4648710 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 BX248581.17 1 202872 -
4648711 4690144 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 BX649452.4 1 41434 -
4690145 4740144 54 N 50000 contig no
4740145 4823155 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CR936282.7 1 83011 +
4823156 5008257 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CT476804.7 1642 186743 -
5008258 5017563 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CR352209.10 134120 143425 +
5017564 5067563 58 N 50000 contig no
5067564 5136561 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 61 BX571689.20 85611 154608 -
5136562 5259364 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 61 BX005291.6 1 122803 -
5259365 5399193 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 61 CR383669.17 1 139829 -
5399194 5449193 62 N 50000 contig no
5449194 5579500 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 CR352262.24 1 130307 +
5579501 5751236 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 CR376733.10 1 171736 +
5751237 5801368 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 CR933789.5 1 50132 -
5801369 5851368 66 N 50000 contig no
5851369 5873445 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 CU694811.8 1 22077 +
5873446 6026752 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 CR847905.23 1 153307 +
6026753 6038787 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 CT955984.6 1 12035 -
6038788 6088787 70 N 50000 contig no
6088788 6129251 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 CR933730.7 25253 65716 -
6129252 6246737 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 CR762409.6 1 117486 +
6246738 6317348 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 BX548035.8 85739 156349 +
6317349 6367348 74 N 50000 contig no
6367349 6427501 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 BX323068.15 1 60153 +
6427502 6589372 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 CT574572.8 1 161871 +
6589373 6668263 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 BX682238.10 1 78891 -
6668264 6718263 78 N 50000 contig no
6718264 6736852 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CR384099.7 1 18589 +
6736853 6868874 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CT573294.7 19436 151457 -
6868875 6971100 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CT583666.9 28015 130240 +
6971101 7021100 82 N 50000 contig no
7021101 7149028 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 AL772148.6 33291 161218 -
7149029 7301573 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 BX294098.11 1 152545 +
7301574 7319064 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 BX294095.13 1 17491 -
7319065 7369064 86 N 50000 contig no
7369065 7479875 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 CU929259.18 29976 140786 -
7479876 7508783 88 A FO904953.3 5795 34702 -
7508784 7702646 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 CU633479.20 1 193863 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
21
Gap types
type-3
21
Total clones
66
Clone HTGS Phases
contiguous
1
finished
65
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
3,287,063
Total finished length of fin clones w/ overlap
9,729,193
Total finished length of fin clones w/o overlap
6,442,130
Total overlap length of fin+unfin clones
3,322,882
Total finished length of fin+unfin clones w/ overlap
9,763,945
Total finished length of fin+unfin clones w/o overlap
6,441,063

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