ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__11 (TPF updated: 2017-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-236D3
alt_ctg11_1_1
zC236D3
EPN details
BX248331.8
finished
2 CH211-171D6
alt_ctg11_1_1
zC171D6
EPN details
AL935027.13
finished
3 CH211-225A3
alt_ctg11_1_1
zC225A3
EPN details
BX119908.8
finished
4 CH211-236N23
alt_ctg11_1_1
zC236N23
EPN details
CU104650.5
finished
  GAP (type-3) length unknown    
6 CH211-248I1
alt_ctg11_1_2
zC248I1
EPN details
BX323045.14
finished
7 DKEY-35H11
alt_ctg11_1_2
zK35H11
EPN details
BX279524.5
finished
8 DKEY-67M7
alt_ctg11_1_2
zK67M7
EPN details
BX255969.8
finished
  GAP (type-3) length unknown    
10 DKEY-28E7
alt_ctg11_1_3
zK28E7
EPN details
CR556712.11
finished
11 DKEY-8O15
alt_ctg11_1_3
CONTAINER
zK8O15
EPN details
CR848705.14
finished
12 CH211-150M24
alt_ctg11_1_3
CONTAINED
zC150M24
EPN details
CU467617.6
finished
11 DKEY-8O15
alt_ctg11_1_3
CONTAINER
zK8O15
EPN details
CR848705.14
finished
  GAP (type-3) length unknown    
14 CH211-69B7
alt_ctg11_1_4
CONTAINER
zC69B7
EPN details
BX004880.9
finished
15 CH211-119M14
alt_ctg11_1_4
CONTAINED
zC119M14
EPN details
CU019623.5
finished
14 CH211-69B7
alt_ctg11_1_4
CONTAINER
zC69B7
EPN details
BX004880.9
finished
  GAP (type-3) length unknown    
17 CH211-156L18
alt_ctg11_1_30
zC156L18
EPN details
BX469912.6
finished
18 CH211-22C7
alt_ctg11_1_30
zC22C7
EPN details
CU179657.6
finished
19 DKEY-27D5
alt_ctg11_1_30
zK27D5
EPN details
BX000700.38
finished
  GAP (type-3) length unknown    
21 DKEY-22M10
alt_ctg11_1_5
zK22M10
EPN details
CR931725.6
finished
22
alt_ctg11_1_5
CABZ01022569
CABZ01022569.1
finished
  GAP (type-3) length unknown    
24 DKEY-9K12
alt_ctg11_1_6
zK9K12
EPN details
BX000430.8
finished
25 CH211-197M2
alt_ctg11_1_6
zC197M2
EPN details
BX572645.26
finished
26 CH211-262I1
alt_ctg11_1_6
zC262I1
EPN details
CR847939.13
finished
  GAP (type-3) length unknown    
28 CH73-141D6
alt_ctg11_1_7
zH141D6
EPN details
CU459095.5
finished
29 DKEY-18M7
alt_ctg11_1_7
zK18M7
EPN details
BX571983.12
finished
30 CH1073-211M21
alt_ctg11_1_7
zFD211M21
EPN details
FQ377907.6
finished
  GAP (type-3) length unknown    
32 CH73-223I23
alt_ctg11_1_8
zH223I23
EPN details
CU929092.7
finished
33 DKEY-43B13
alt_ctg11_1_8
zK43B13
EPN details
CR749176.14
finished
34 DKEY-81L11
alt_ctg11_1_8
zK81L11
EPN details
CT573268.9
finished
  GAP (type-3) length unknown    
36 CH73-92C7
alt_ctg11_1_9
zH92C7
EPN details
FP003590.14
finished
37 DKEY-15D15
alt_ctg11_1_9
zK15D15
EPN details
CU207258.9
finished
38 DKEY-228N9
alt_ctg11_1_9
zK228N9
EPN details
CR854846.8
finished
  GAP (type-3) length unknown    
40 DKEY-5O10
alt_ctg11_1_10
zK5O10
EPN details
AL844563.15
finished
41 DKEY-43J14
alt_ctg11_1_10
zK43J14
EPN details
CR846086.14
finished
42 DKEYP-74F12
alt_ctg11_1_10
zKp74F12
EPN details
CT955969.9
finished
  GAP (type-3) length unknown    
44 CH211-225N13
alt_ctg11_1_11
zC225N13
EPN details
CR847506.9
finished
45 DKEY-47L19
alt_ctg11_1_11
zK47L19
EPN details
AL954663.13
finished
46 CH211-130F2
alt_ctg11_1_11
CONTAINER
zC130F2
EPN details
CU013545.15
finished
47 CH211-14L11
alt_ctg11_1_11
CONTAINED
zC14L11
EPN details
BX001059.6
finished
46 CH211-130F2
alt_ctg11_1_11
CONTAINER
zC130F2
EPN details
CU013545.15
finished
  GAP (type-3) length unknown    
49 DKEY-52E24
alt_ctg11_1_12
zK52E24
EPN details
CR631124.14
finished
50 DKEYP-19G9
alt_ctg11_1_12
zKp19G9
EPN details
BX890603.17
finished
51 DKEY-35E8
alt_ctg11_1_12
zK35E8
EPN details
BX571952.13
finished
  GAP (type-3) length unknown    
53 CH211-198D15
alt_ctg11_1_13
zC198D15
EPN details
CT033822.13
finished
54 DKEY-6H1
alt_ctg11_1_13
zK6H1
EPN details
BX572634.7
finished
55 CH211-14I3
alt_ctg11_1_13
CONTAINER
zC14I3
EPN details
CR589944.10
finished
56 DKEYP-86G5
alt_ctg11_1_13
CONTAINED
zKp86G5
EPN details
BX572081.6
finished
55 CH211-14I3
alt_ctg11_1_13
CONTAINER
zC14I3
EPN details
CR589944.10
finished
  GAP (type-3) length unknown    
58 DKEY-179K5
alt_ctg11_1_14
zK179K5
EPN details
LO018315.1
contiguous
59 DKEY-182B23
alt_ctg11_1_14
zK182B23
EPN details
BX571941.4
finished
60 DKEY-14H17
alt_ctg11_1_14
zK14H17
EPN details
BX005175.8
finished
  GAP (type-3) length unknown    
62 CH211-146M8
alt_ctg11_1_15
zC146M8
EPN details
CU019544.14
finished
63 CH211-232N15
alt_ctg11_1_15
zC232N15
EPN details
CR735106.9
finished
64 DKEY-261G17
alt_ctg11_1_15
zK261G17
EPN details
CR931959.16
finished
  GAP (type-3) length unknown    
66 CH211-205H10
alt_ctg11_1_16
zC205H10
EPN details
BX640470.7
finished
67 CH211-78C14
alt_ctg11_1_16
zC78C14
EPN details
CR450690.7
finished
68 DKEY-251M8
alt_ctg11_1_16
CONTAINER
zK251M8
EPN details
BX571709.23
finished
69 RP71-7E23
alt_ctg11_1_16
CONTAINED
bZ7E23
EPN details
CT997808.7
finished
68 DKEY-251M8
alt_ctg11_1_16
CONTAINER
zK251M8
EPN details
BX571709.23
finished
  GAP (type-3) length unknown    
71 DKEYP-32H12
alt_ctg11_1_17
zKp32H12
EPN details
BX321912.5
finished
72 DKEY-222O19
alt_ctg11_1_17
zK222O19
EPN details
BX072582.6
finished
73 DKEY-85P17
alt_ctg11_1_17
zK85P17
EPN details
CR848745.16
finished
  GAP (type-3) length unknown    
75 CH211-63H10
alt_ctg11_1_18
zC63H10
EPN details
BX470231.8
finished
76 DKEY-287J13
alt_ctg11_1_18
zK287J13
EPN details
BX571833.6
finished
  GAP (type-3) length unknown    
78 DKEY-158N23
alt_ctg11_1_19
zK158N23
EPN details
CR354444.17
finished
79 DKEY-267P8
alt_ctg11_1_19
zK267P8
EPN details
CR391931.7
finished
80 CH73-73I11
alt_ctg11_1_19
zH73I11
EPN details
CU695205.10
finished
  GAP (type-3) length unknown    
82 DKEY-27B23
alt_ctg11_1_20
zK27B23
EPN details
BX072564.4
finished
83 CH211-139N7
alt_ctg11_1_20
zC139N7
EPN details
BX649420.2
finished
84 DKEY-13G7
alt_ctg11_1_20
zK13G7
EPN details
CR812923.9
finished
  GAP (type-3) length unknown    
86 CH211-137O16
alt_ctg11_1_21
zC137O16
EPN details
CR628365.6
finished
87 CH211-112P19
alt_ctg11_1_21
zC112P19
EPN details
BX936363.13
finished
88 CH211-274P22
alt_ctg11_1_21
zC274P22
EPN details
CR848671.5
finished
  GAP (type-3) length unknown    
90 DKEYP-97E7
alt_ctg11_1_22
zKp97E7
EPN details
CR932000.4
finished
91 DKEY-13A21
alt_ctg11_1_22
zK13A21
EPN details
AL844847.6
finished
92 DKEY-183J2
alt_ctg11_1_22
zK183J2
EPN details
CR933820.6
finished
  GAP (type-3) length unknown    
94 DKEY-202E22
alt_ctg11_1_23
zK202E22
EPN details
BX005001.7
finished
95 DKEY-283C16
alt_ctg11_1_23
zK283C16
EPN details
CR381687.17
finished
96 DKEY-31O6
alt_ctg11_1_23
zK31O6
EPN details
BX511264.7
finished
  GAP (type-3) length unknown    
98 CH211-261I24
alt_ctg11_1_24
zC261I24
EPN details
BX293991.12
finished
99 DKEY-231O6
alt_ctg11_1_24
zK231O6
EPN details
CU302307.5
finished
100 DKEYP-92B10
alt_ctg11_1_24
zKp92B10
EPN details
CR854834.11
finished
  GAP (type-3) length unknown    
102 DKEY-51M8
alt_ctg11_1_25
zK51M8
EPN details
CR933559.5
finished
103 RP71-8E8
alt_ctg11_1_25
bZ8E8
EPN details
BX465223.9
finished
104 CH211-213O11
alt_ctg11_1_25
zC213O11
EPN details
BX248230.21
finished
  GAP (type-3) length unknown    
106 CH211-112F3
alt_ctg11_1_26
zC112F3
EPN details
AL929022.8
finished
107 CH211-185C9
alt_ctg11_1_26
zC185C9
EPN details
BX004882.10
finished
108 DKEY-53H9
alt_ctg11_1_26
zK53H9
EPN details
AL929596.11
finished
109 DKEY-264P8
alt_ctg11_1_26
zK264P8
EPN details
CR931939.21
finished
  GAP (type-3) length unknown    
111
alt_ctg11_1_27
CABZ01087025
CABZ01087025.1
finished
112 CH211-119A10
alt_ctg11_1_27
zC119A10
EPN details
BX957335.12
finished
113 CH211-190K22
alt_ctg11_1_27
zC190K22
EPN details
FO704713.3
contiguous
  GAP (type-3) length unknown    
115 DKEY-71J7
alt_ctg11_1_28
CONTAINER
zK71J7
EPN details
AL928649.7
finished
116 CH211-11G6
alt_ctg11_1_28
CONTAINED
zC11G6
EPN details
CT033846.15
finished
115 DKEY-71J7
alt_ctg11_1_28
CONTAINER
zK71J7
EPN details
AL928649.7
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 172071 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX248331.8 2001 174071 -
172072 226064 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL935027.13 1 53993 -
226065 345500 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX119908.8 367 119802 -
345501 377017 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU104650.5 37976 69492 +
377018 427017 5 N 50000 contig no
427018 481799 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX323045.14 49848 104629 -
481800 639239 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX279524.5 1 157440 -
639240 673661 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX255969.8 1 34422 -
673662 723661 9 N 50000 contig no
723662 836379 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CR556712.11 1 112718 +
836380 836380 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CR848705.14 246422 246422 -
836381 984383 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CU467617.6 289 148291 +
984384 1067361 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 13 CR848705.14 1 82978 -
1067362 1117361 14 N 50000 contig no
1117362 1251027 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 BX004880.9 1 133666 +
1251028 1296153 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 CU019623.5 1 45126 +
1296154 1313695 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 BX004880.9 177298 194839 +
1313696 1363695 18 N 50000 contig no
1363696 1499988 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX469912.6 20188 156480 -
1499989 1648848 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CU179657.6 34280 183139 +
1648849 1856640 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX000700.38 15564 223355 +
1856641 1906640 22 N 50000 contig no
1906641 2111939 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 CR931725.6 1 205299 -
2111940 2140604 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 CABZ01022569.1 20865 49529 +
2140605 2190604 25 N 50000 contig no
2190605 2311017 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX000430.8 61228 181640 -
2311018 2423756 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX572645.26 1 112739 +
2423757 2522899 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 CR847939.13 82846 181988 +
2522900 2572899 29 N 50000 contig no
2572900 2588066 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CU459095.5 1 15167 +
2588067 2831822 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 BX571983.12 5174 248929 +
2831823 2848658 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 FQ377907.6 3434 20269 +
2848659 2898658 33 N 50000 contig no
2898659 2979192 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CU929092.7 1 80534 +
2979193 3216841 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CR749176.14 1 237649 +
3216842 3255067 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CT573268.9 65986 104211 +
3255068 3305067 37 N 50000 contig no
3305068 3386841 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 FP003590.14 28029 109802 -
3386842 3604759 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 CU207258.9 1 217918 +
3604760 3771153 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 CR854846.8 35971 202364 +
3771154 3821153 41 N 50000 contig no
3821154 3872782 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AL844563.15 1 51629 +
3872783 4099334 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CR846086.14 1 226552 +
4099335 4275991 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CT955969.9 42185 218841 +
4275992 4325991 45 N 50000 contig no
4325992 4356294 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CR847506.9 78587 108889 -
4356295 4581047 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 AL954663.13 1 224753 -
4581048 4583048 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CU013545.15 63788 65788 +
4583049 4663488 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 BX001059.6 1 80440 -
4663489 4689856 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 CU013545.15 140959 167326 +
4689857 4739856 51 N 50000 contig no
4739857 4752618 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CR631124.14 1 12762 +
4752619 4937324 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX890603.17 6 184711 -
4937325 5082265 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX571952.13 30985 175925 +
5082266 5132265 55 N 50000 contig no
5132266 5185255 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 60 CT033822.13 1 52990 +
5185256 5387716 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 60 BX572634.7 1 202461 +
5387717 5389775 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 60 CR589944.10 153166 155224 -
5389776 5541923 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 60 BX572081.6 1 152148 +
5541924 5553869 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 60 CR589944.10 1 11946 -
5553870 5603869 61 N 50000 contig no
5603870 5814726 62 A LO018315.1 1 210857 +
5814727 5863771 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 BX571941.4 1 49045 +
5863772 6057575 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 BX005175.8 41048 234851 +
6057576 6107575 65 N 50000 contig no
6107576 6127134 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CU019544.14 1 19559 +
6127135 6294951 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR735106.9 13 167829 +
6294952 6351227 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR931959.16 1 56276 -
6351228 6401227 69 N 50000 contig no
6401228 6451932 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 74 BX640470.7 81164 131868 -
6451933 6611830 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 74 CR450690.7 1 159898 +
6611831 6637150 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 74 BX571709.23 67393 92712 -
6637151 6741826 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 74 CT997808.7 1 104676 -
6741827 6743832 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 74 BX571709.23 1 2006 -
6743833 6793832 75 N 50000 contig no
6793833 6915764 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 BX321912.5 35358 157289 -
6915765 7110682 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 BX072582.6 1 194918 +
7110683 7123020 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 CR848745.16 1 12338 -
7123021 7173020 79 N 50000 contig no
7173021 7353798 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 81 BX470231.8 1 180778 -
7353799 7434934 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 81 BX571833.6 1 81136 -
7434935 7484934 82 N 50000 contig no
7484935 7587325 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 CR354444.17 1 102391 +
7587326 7723809 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 CR391931.7 1 136484 -
7723810 7782312 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 CU695205.10 1 58503 -
7782313 7832312 86 N 50000 contig no
7832313 7896895 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 BX072564.4 1 64583 +
7896896 8063753 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 BX649420.2 1 166858 +
8063754 8143420 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 CR812923.9 67331 146997 +
8143421 8193420 90 N 50000 contig no
8193421 8204828 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 93 CR628365.6 1 11408 +
8204829 8389677 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 93 BX936363.13 1 184849 +
8389678 8462194 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 93 CR848671.5 3937 76453 +
8462195 8512194 94 N 50000 contig no
8512195 8557438 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 97 CR932000.4 1 45244 +
8557439 8792612 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 97 AL844847.6 1 235174 +
8792613 8925534 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 97 CR933820.6 1 132922 -
8925535 8975534 98 N 50000 contig no
8975535 8994802 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 BX005001.7 1 19268 +
8994803 9194751 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 CR381687.17 1 199949 +
9194752 9222016 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 BX511264.7 118341 145605 +
9222017 9272016 102 N 50000 contig no
9272017 9451594 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 BX293991.12 1 179578 +
9451595 9621606 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 CU302307.5 1 170012 +
9621607 9724999 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 CR854834.11 37092 140484 +
9725000 9774999 106 N 50000 contig no
9775000 9857669 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 CR933559.5 1 82670 +
9857670 10040891 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 BX465223.9 1 183222 -
10040892 10157475 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 BX248230.21 1 116584 -
10157476 10207475 110 N 50000 contig no
10207476 10256800 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 114 AL929022.8 1 49325 +
10256801 10394277 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 114 BX004882.10 1 137477 +
10394278 10584151 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 114 AL929596.11 2001 191874 +
10584152 10617542 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 114 CR931939.21 1 33391 -
10617543 10667542 115 N 50000 contig no
10667543 10709371 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 CABZ01087025.1 4691 46519 -
10709372 10877728 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 BX957335.12 88 168444 -
10877729 10982189 118 A FO704713.3 48110 152570 +
10982190 11032189 119 N 50000 contig no
11032190 11046696 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 122 AL928649.7 193623 208129 -
11046697 11095863 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 122 CT033846.15 1 49167 -
11095864 11233175 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 122 AL928649.7 1 137312 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-236D3
alt_ctg11_1_1
zC236D3
-
-
BX248331.8
finished
174071 CHORI-211 5' / 3'
2001 / 53993
- / -
2000
0
Identified
2004-02-18
find_overl...
badger
 
2 CH211-171D6
alt_ctg11_1_1
zC171D6
-
-
AL935027.13
finished
53993 CHORI-211 5' / 3'
1 / 119802
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-225A3
alt_ctg11_1_1
zC225A3
-
-
BX119908.8
finished
121802 CHORI-211 5' / 5'
367 / 37976
- / -
38341
0
Identified
2017-03-07
agp2oracle
humpub
 
4 CH211-236N23
alt_ctg11_1_1
zC236N23
-
-
CU104650.5
finished
69492 CHORI-211        
  GAP (type-3) length unknown                  
6 CH211-248I1
alt_ctg11_1_2
zC248I1
-
-
BX323045.14
finished
104629 CHORI-211 5' / 3'
49848 / 157440
- / -
49847
0
Identified
2017-03-07
agp2oracle
humpub
 
7 DKEY-35H11
alt_ctg11_1_2
zK35H11
-
-
BX279524.5
finished
157440 DanioKey 5' / 3'
1 / 34422
- / -
121295
0
Identified
2017-03-07
agp2oracle
humpub
 
8 DKEY-67M7
alt_ctg11_1_2
zK67M7
-
-
BX255969.8
finished
155717 DanioKey        
  GAP (type-3) length unknown                  
10 DKEY-28E7
alt_ctg11_1_3
zK28E7
-
-
CR556712.11
finished
112718 DanioKey 3' / 3'
112718 / 246422
- / -
12648
0
Identified
2017-09-19
agp2oracle
humpub
 
11 DKEY-8O15
alt_ctg11_1_3
CONTAINER
zK8O15
-
-
CR848705.14
finished
259070 DanioKey 5' / 5'
246422 / 289
- / -
148291
0
Identified
2017-03-07
agp2oracle
humpub
 
12 CH211-150M24
alt_ctg11_1_3
CONTAINED
zC150M24
-
-
CU467617.6
finished
148291 CHORI-211 3' / 3'
148291 / 82978
- / -
148291
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-8O15
alt_ctg11_1_3
CONTAINER
zK8O15
-
-
CR848705.14
finished
259070 DanioKey        
  GAP (type-3) length unknown                  
14 CH211-69B7
alt_ctg11_1_4
CONTAINER
zC69B7
-
-
BX004880.9
finished
194839 CHORI-211 3' / 5'
133666 / 1
- / -
52255
0
Identified
2017-03-07
agp2oracle
humpub
 
15 CH211-119M14
alt_ctg11_1_4
CONTAINED
zC119M14
-
-
CU019623.5
finished
52255 CHORI-211 3' / 5'
45126 / 177298
- / -
52255
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-69B7
alt_ctg11_1_4
CONTAINER
zC69B7
-
-
BX004880.9
finished
194839 CHORI-211        
  GAP (type-3) length unknown                  
17 CH211-156L18
alt_ctg11_1_30
zC156L18
-
-
BX469912.6
finished
156480 CHORI-211 5' / 5'
20188 / 34280
- / -
54466
0
Identified
2017-04-18
agp2oracle
humpub
 
18 CH211-22C7
alt_ctg11_1_30
zC22C7
-
-
CU179657.6
finished
190260 CHORI-211 3' / 5'
183139 / 15564
- / -
22684
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEY-27D5
alt_ctg11_1_30
zK27D5
-
-
BX000700.38
finished
223355 DanioKey        
  GAP (type-3) length unknown                  
21 DKEY-22M10
alt_ctg11_1_5
zK22M10
-
-
CR931725.6
finished
205299 DanioKey 5' / 5'
1 / 20865
- / -
20864
0
Identified
2017-03-07
agp2oracle
humpub
 
22
alt_ctg11_1_5
CABZ01022569
-
-
CABZ01022569.1
finished
49529 -        
  GAP (type-3) length unknown                  
24 DKEY-9K12
alt_ctg11_1_6
zK9K12
-
-
BX000430.8
finished
181640 DanioKey 5' / 5'
61228 / 1
- / -
61227
0
Identified
2017-03-07
agp2oracle
humpub
 
25 CH211-197M2
alt_ctg11_1_6
zC197M2
-
-
BX572645.26
finished
112739 CHORI-211 3' / 5'
112739 / 82846
- / -
82845
0
Identified
2017-03-07
agp2oracle
humpub
 
26 CH211-262I1
alt_ctg11_1_6
zC262I1
-
-
CR847939.13
finished
181988 CHORI-211        
  GAP (type-3) length unknown                  
28 CH73-141D6
alt_ctg11_1_7
zH141D6
-
-
CU459095.5
finished
76946 CHORI-73 3' / 5'
15167 / 5174
- / -
66952
0
Identified
2017-03-07
agp2oracle
humpub
 
29 DKEY-18M7
alt_ctg11_1_7
zK18M7
-
-
BX571983.12
finished
248929 DanioKey 3' / 5'
248929 / 3434
- / -
3433
0
Identified
2017-03-07
agp2oracle
humpub
 
30 CH1073-211M21
alt_ctg11_1_7
zFD211M21
-
-
FQ377907.6
finished
20269 CHORI1073        
  GAP (type-3) length unknown                  
32 CH73-223I23
alt_ctg11_1_8
zH223I23
-
-
CU929092.7
finished
88958 CHORI-73 3' / 5'
80534 / 1
- / -
8424
0
Identified
2017-03-07
agp2oracle
humpub
 
33 DKEY-43B13
alt_ctg11_1_8
zK43B13
-
-
CR749176.14
finished
237649 DanioKey 3' / 5'
237649 / 65986
- / -
65985
0
Identified
2017-03-07
agp2oracle
humpub
 
34 DKEY-81L11
alt_ctg11_1_8
zK81L11
-
-
CT573268.9
finished
104211 DanioKey        
  GAP (type-3) length unknown                  
36 CH73-92C7
alt_ctg11_1_9
zH92C7
-
-
FP003590.14
finished
109802 CHORI-73 5' / 5'
28029 / 1
- / -
28028
0
Identified
2017-03-07
agp2oracle
humpub
 
37 DKEY-15D15
alt_ctg11_1_9
zK15D15
-
-
CU207258.9
finished
217918 DanioKey 3' / 5'
217918 / 35971
- / -
35970
0
Identified
2017-03-07
agp2oracle
humpub
 
38 DKEY-228N9
alt_ctg11_1_9
zK228N9
-
-
CR854846.8
finished
202364 DanioKey        
  GAP (type-3) length unknown                  
40 DKEY-5O10
alt_ctg11_1_10
zK5O10
-
-
AL844563.15
finished
227750 DanioKey 3' / 5'
51629 / 1
- / -
176121
0
Identified
2017-03-07
agp2oracle
humpub
 
41 DKEY-43J14
alt_ctg11_1_10
zK43J14
-
-
CR846086.14
finished
226552 DanioKey 3' / 5'
226552 / 42185
- / -
42184
0
Identified
2017-03-07
agp2oracle
humpub
 
42 DKEYP-74F12
alt_ctg11_1_10
zKp74F12
-
-
CT955969.9
finished
218841 DanioKeypilot        
  GAP (type-3) length unknown                  
44 CH211-225N13
alt_ctg11_1_11
zC225N13
-
-
CR847506.9
finished
108889 CHORI-211 5' / 3'
78587 / 224753
- / -
78586
0
Identified
2017-03-07
agp2oracle
humpub
 
45 DKEY-47L19
alt_ctg11_1_11
zK47L19
-
-
AL954663.13
finished
224753 DanioKey 5' / 5'
1 / 63788
- / -
63787
0
Identified
2017-03-07
agp2oracle
humpub
 
46 CH211-130F2
alt_ctg11_1_11
CONTAINER
zC130F2
-
-
CU013545.15
finished
167326 CHORI-211 3' / 3'
65788 / 80440
- / -
80440
0
Identified
2017-03-07
agp2oracle
humpub
 
47 CH211-14L11
alt_ctg11_1_11
CONTAINED
zC14L11
-
-
BX001059.6
finished
80440 CHORI-211 5' / 5'
1 / 140959
- / -
80440
0
Identified
2017-03-07
agp2oracle
humpub
 
46 CH211-130F2
alt_ctg11_1_11
CONTAINER
zC130F2
-
-
CU013545.15
finished
167326 CHORI-211        
  GAP (type-3) length unknown                  
49 DKEY-52E24
alt_ctg11_1_12
zK52E24
-
-
CR631124.14
finished
170557 DanioKey 3' / 3'
12762 / 184711
- / -
157795
0
Identified
2017-03-07
agp2oracle
humpub
 
50 DKEYP-19G9
alt_ctg11_1_12
zKp19G9
-
-
BX890603.17
finished
184711 DanioKeypilot 5' / 5'
6 / 30985
- / -
30989
0
Identified
2017-03-07
agp2oracle
humpub
 
51 DKEY-35E8
alt_ctg11_1_12
zK35E8
-
-
BX571952.13
finished
175925 DanioKey        
  GAP (type-3) length unknown                  
53 CH211-198D15
alt_ctg11_1_13
zC198D15
-
-
CT033822.13
finished
56115 CHORI-211 3' / 5'
52990 / 1
- / -
3125
0
Identified
2017-03-07
agp2oracle
humpub
 
54 DKEY-6H1
alt_ctg11_1_13
zK6H1
-
-
BX572634.7
finished
202461 DanioKey 3' / 3'
202461 / 155224
- / -
1918
0
Identified
2017-03-07
agp2oracle
humpub
 
55 CH211-14I3
alt_ctg11_1_13
CONTAINER
zC14I3
-
-
CR589944.10
finished
157142 CHORI-211 5' / 5'
153166 / 1
- / -
152148
0
Identified
2017-03-07
agp2oracle
humpub
 
56 DKEYP-86G5
alt_ctg11_1_13
CONTAINED
zKp86G5
-
-
BX572081.6
finished
152148 DanioKeypilot 3' / 3'
152148 / 11946
- / -
152148
0
Identified
2017-03-07
agp2oracle
humpub
 
55 CH211-14I3
alt_ctg11_1_13
CONTAINER
zC14I3
-
-
CR589944.10
finished
157142 CHORI-211        
  GAP (type-3) length unknown                  
58 DKEY-179K5
alt_ctg11_1_14
zK179K5
-
-
LO018315.1
contiguous
246984 DanioKey 3' / 5'
210857 / 1
- / -
36127
0
Identified
2017-03-31
agp2oracle
humpub
 
59 DKEY-182B23
alt_ctg11_1_14
zK182B23
-
-
BX571941.4
finished
49045 DanioKey 3' / 5'
49045 / 41048
- / -
41047
0
Identified
2017-03-07
agp2oracle
humpub
 
60 DKEY-14H17
alt_ctg11_1_14
zK14H17
-
-
BX005175.8
finished
234851 DanioKey        
  GAP (type-3) length unknown                  
62 CH211-146M8
alt_ctg11_1_15
zC146M8
-
-
CU019544.14
finished
24936 CHORI-211 3' / 5'
19559 / 13
- / -
5389
0
Identified
2017-03-07
agp2oracle
humpub
 
63 CH211-232N15
alt_ctg11_1_15
zC232N15
-
-
CR735106.9
finished
167829 CHORI-211 3' / 3'
167829 / 56276
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
64 DKEY-261G17
alt_ctg11_1_15
zK261G17
-
-
CR931959.16
finished
58276 DanioKey        
  GAP (type-3) length unknown                  
66 CH211-205H10
alt_ctg11_1_16
zC205H10
-
-
BX640470.7
finished
131868 CHORI-211 5' / 5'
81164 / 1
- / -
81163
0
Identified
2017-03-07
agp2oracle
humpub
 
67 CH211-78C14
alt_ctg11_1_16
zC78C14
-
-
CR450690.7
finished
163328 CHORI-211 3' / 3'
159898 / 92712
- / -
65100
0
Identified
2017-03-07
agp2oracle
humpub
 
68 DKEY-251M8
alt_ctg11_1_16
CONTAINER
zK251M8
-
-
BX571709.23
finished
154382 DanioKey 5' / 3'
67393 / 104676
- / -
104898
0
Identified
2017-03-07
agp2oracle
humpub
 
69 RP71-7E23
alt_ctg11_1_16
CONTAINED
bZ7E23
-
-
CT997808.7
finished
104898 RPCI-71 5' / 3'
1 / 2006
- / -
104898
0
Identified
2017-03-07
agp2oracle
humpub
 
68 DKEY-251M8
alt_ctg11_1_16
CONTAINER
zK251M8
-
-
BX571709.23
finished
154382 DanioKey        
  GAP (type-3) length unknown                  
71 DKEYP-32H12
alt_ctg11_1_17
zKp32H12
-
-
BX321912.5
finished
157289 DanioKeypilot 5' / 5'
35358 / 1
- / -
35357
0
Identified
2017-03-07
agp2oracle
humpub
 
72 DKEY-222O19
alt_ctg11_1_17
zK222O19
-
-
BX072582.6
finished
194918 DanioKey 3' / 3'
194918 / 12338
- / -
122026
0
Identified
2017-03-07
agp2oracle
humpub
 
73 DKEY-85P17
alt_ctg11_1_17
zK85P17
-
-
CR848745.16
finished
134364 DanioKey        
  GAP (type-3) length unknown                  
75 CH211-63H10
alt_ctg11_1_18
zC63H10
-
-
BX470231.8
finished
180778 CHORI-211 5' / 3'
1 / 81136
- / -
116914
0
Identified
2017-03-07
agp2oracle
humpub
 
76 DKEY-287J13
alt_ctg11_1_18
zK287J13
-
-
BX571833.6
finished
198050 DanioKey        
  GAP (type-3) length unknown                  
78 DKEY-158N23
alt_ctg11_1_19
zK158N23
-
-
CR354444.17
finished
218819 DanioKey 3' / 3'
102391 / 136484
- / -
116428
0
Identified
2017-03-07
agp2oracle
humpub
 
79 DKEY-267P8
alt_ctg11_1_19
zK267P8
-
-
CR391931.7
finished
136484 DanioKey 5' / 3'
1 / 58503
- / -
10107
0
Identified
2017-03-07
agp2oracle
humpub
 
80 CH73-73I11
alt_ctg11_1_19
zH73I11
-
-
CU695205.10
finished
68610 CHORI-73        
  GAP (type-3) length unknown                  
82 DKEY-27B23
alt_ctg11_1_20
zK27B23
-
-
BX072564.4
finished
205057 DanioKey 3' / 5'
64583 / 1
- / -
140474
0
Identified
2017-03-07
agp2oracle
humpub
 
83 CH211-139N7
alt_ctg11_1_20
zC139N7
-
-
BX649420.2
finished
166858 CHORI-211 3' / 5'
166858 / 67331
- / -
67330
0
Identified
2017-03-07
agp2oracle
humpub
 
84 DKEY-13G7
alt_ctg11_1_20
zK13G7
-
-
CR812923.9
finished
146997 DanioKey        
  GAP (type-3) length unknown                  
86 CH211-137O16
alt_ctg11_1_21
zC137O16
-
-
CR628365.6
finished
191036 CHORI-211 3' / 5'
11408 / 1
- / -
179628
0
Identified
2017-03-07
agp2oracle
humpub
 
87 CH211-112P19
alt_ctg11_1_21
zC112P19
-
-
BX936363.13
finished
184849 CHORI-211 3' / 5'
184849 / 3937
- / -
3936
0
Identified
2017-03-07
agp2oracle
humpub
 
88 CH211-274P22
alt_ctg11_1_21
zC274P22
-
-
CR848671.5
finished
76453 CHORI-211        
  GAP (type-3) length unknown                  
90 DKEYP-97E7
alt_ctg11_1_22
zKp97E7
-
-
CR932000.4
finished
77992 DanioKeypilot 3' / 5'
45244 / 1
- / -
32748
0
Identified
2017-03-07
agp2oracle
humpub
 
91 DKEY-13A21
alt_ctg11_1_22
zK13A21
-
-
AL844847.6
finished
235174 DanioKey 3' / 3'
235174 / 132922
- / -
97345
0
Identified
2017-03-07
agp2oracle
humpub
 
92 DKEY-183J2
alt_ctg11_1_22
zK183J2
-
-
CR933820.6
finished
230267 DanioKey        
  GAP (type-3) length unknown                  
94 DKEY-202E22
alt_ctg11_1_23
zK202E22
-
-
BX005001.7
finished
105368 DanioKey 3' / 5'
19268 / 1
- / -
86100
0
Identified
2017-03-07
agp2oracle
humpub
 
95 DKEY-283C16
alt_ctg11_1_23
zK283C16
-
-
CR381687.17
finished
202525 DanioKey 3' / 5'
199949 / 118341
- / -
120916
0
Identified
2017-03-07
agp2oracle
humpub
 
96 DKEY-31O6
alt_ctg11_1_23
zK31O6
-
-
BX511264.7
finished
145605 DanioKey        
  GAP (type-3) length unknown                  
98 CH211-261I24
alt_ctg11_1_24
zC261I24
-
-
BX293991.12
finished
198825 CHORI-211 3' / 5'
179578 / 1
- / -
19247
0
Identified
2017-03-07
agp2oracle
humpub
 
99 DKEY-231O6
alt_ctg11_1_24
zK231O6
-
-
CU302307.5
finished
178447 DanioKey 3' / 5'
170012 / 37092
- / -
45526
0
Identified
2017-03-07
agp2oracle
humpub
 
100 DKEYP-92B10
alt_ctg11_1_24
zKp92B10
-
-
CR854834.11
finished
140484 DanioKeypilot        
  GAP (type-3) length unknown                  
102 DKEY-51M8
alt_ctg11_1_25
zK51M8
-
-
CR933559.5
finished
119833 DanioKey 3' / 3'
82670 / 183222
- / -
37170
0
Identified
2017-03-07
agp2oracle
humpub
 
103 RP71-8E8
alt_ctg11_1_25
bZ8E8
-
-
BX465223.9
finished
183229 RPCI-71 5' / 3'
1 / 116584
- / -
100848
0
Identified
2017-03-07
agp2oracle
humpub
 
104 CH211-213O11
alt_ctg11_1_25
zC213O11
-
-
BX248230.21
finished
217432 CHORI-211        
  GAP (type-3) length unknown                  
106 CH211-112F3
alt_ctg11_1_26
zC112F3
-
-
AL929022.8
finished
169617 CHORI-211 3' / 5'
49325 / 1
- / -
120292
0
Identified
2017-03-07
agp2oracle
humpub
 
107 CH211-185C9
alt_ctg11_1_26
zC185C9
-
-
BX004882.10
finished
137477 CHORI-211 3' / 5'
137477 / 2001
- / -
2000
0
Identified
2004-02-27
find_overl...
badger
 
108 DKEY-53H9
alt_ctg11_1_26
zK53H9
-
-
AL929596.11
finished
191874 DanioKey 3' / 3'
191874 / 33391
- / -
98877
0
Identified
2017-03-07
agp2oracle
humpub
 
109 DKEY-264P8
alt_ctg11_1_26
zK264P8
-
-
CR931939.21
finished
132268 DanioKey        
  GAP (type-3) length unknown                  
111
alt_ctg11_1_27
CABZ01087025
-
-
CABZ01087025.1
finished
46519 - 5' / 3'
4691 / 168444
- / -
4690
0
Identified
2017-03-07
agp2oracle
humpub
 
112 CH211-119A10
alt_ctg11_1_27
zC119A10
-
-
BX957335.12
finished
168444 CHORI-211 5' / 5'
88 / 48110
- / -
48196
0
Identified
2017-03-31
agp2oracle
humpub
 
113 CH211-190K22
alt_ctg11_1_27
zC190K22
-
-
FO704713.3
contiguous
152570 CHORI-211        
  GAP (type-3) length unknown                  
115 DKEY-71J7
alt_ctg11_1_28
CONTAINER
zK71J7
-
-
AL928649.7
finished
208129 DanioKey 5' / 3'
193623 / 49167
- / -
172041
0
Identified
2017-03-31
agp2oracle
humpub
 
116 CH211-11G6
alt_ctg11_1_28
CONTAINED
zC11G6
-
-
CT033846.15
finished
172041 CHORI-211 5' / 3'
1 / 137312
- / -
172041
0
Identified
2017-03-31
agp2oracle
humpub
 
115 DKEY-71J7
alt_ctg11_1_28
CONTAINER
zK71J7
-
-
AL928649.7
finished
208129 DanioKey        

Statistics

Help

Clone Summary

Number of gaps
28
Gap types
type-3
28
Total clones
88
Clone HTGS Phases
contiguous
2
finished
86
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
3,685,187
Total finished length of fin clones w/ overlap
13,177,788
Total finished length of fin clones w/o overlap
9,492,601
Total overlap length of fin+unfin clones
3,769,510
Total finished length of fin+unfin clones w/ overlap
13,577,342
Total finished length of fin+unfin clones w/o overlap
9,807,832

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