ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__15 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-195H6
alt_ctg15_1_1
zC195H6
BX088654.11
finished
2 CH211-130P10
alt_ctg15_1_1
zC130P10
BX000987.6
finished
3 CH211-162G12
alt_ctg15_1_1
zC162G12
CR848754.3
finished
  GAP (type-3) length unknown    
5 DKEY-270J5
alt_ctg15_1_2
zK270J5
CR396585.6
finished
6 CH211-227G18
alt_ctg15_1_2
zC227G18
AL929010.5
finished
7 CH73-232G7
alt_ctg15_1_2
zH232G7
CU571391.3
finished
  GAP (type-3) length unknown    
9 CH211-232G13
alt_ctg15_1_3
zC232G13
AL935158.7
finished
10 DKEY-188M1
alt_ctg15_1_3
zK188M1
CR589881.11
finished
11 DKEYP-98F5
alt_ctg15_1_3
zKp98F5
BX323573.7
finished
  GAP (type-3) length unknown    
13 DKEY-278N18
alt_ctg15_1_4
zK278N18
BX897750.11
finished
14 DKEY-265J11
alt_ctg15_1_4
zK265J11
BX901890.16
finished
  GAP (type-3) length unknown    
16 CH211-116O3
alt_ctg15_1_5
CONTAINER
zC116O3
BX927244.11
finished
17 CH211-210O21
alt_ctg15_1_5
CONTAINED
zC210O21
CR848009.9
finished
16 CH211-116O3
alt_ctg15_1_5
CONTAINER
zC116O3
BX927244.11
finished
  GAP (type-3) length unknown    
19 DKEY-243K1
alt_ctg15_1_6
zK243K1
CR925813.10
finished
20 CH211-151C7
alt_ctg15_1_6
zC151C7
BX000997.10
finished
  GAP (type-3) length unknown    
22 CH73-294K12
alt_ctg15_1_7
zH294K12
FP236835.6
finished
23 CH211-122O8
alt_ctg15_1_7
zC122O8
AL929103.7
finished
24 DKEY-114G7
alt_ctg15_1_7
zK114G7
CR318657.8
finished
  GAP (type-3) length unknown    
26 CH73-136D10
alt_ctg15_1_8
zH136D10
FP236470.24
finished
27 CH211-152B13
alt_ctg15_1_8
zC152B13
AL928863.14
finished
28 CH211-149E23
alt_ctg15_1_8
zC149E23
CR450848.13
finished
  GAP (type-3) length unknown    
30 DKEY-81N5
alt_ctg15_1_9
zK81N5
CR855391.6
finished
31 CH211-9D19
alt_ctg15_1_9
zC9D19
CR392353.6
finished
32 CH211-187B9
alt_ctg15_1_9
zC187B9
CR848661.5
finished
  GAP (type-3) length unknown    
34 DKEY-229J2
alt_ctg15_1_10
zK229J2
CR848840.14
finished
35 DKEY-64O12
alt_ctg15_1_10
zK64O12
BX004818.16
finished
36 CH73-337H16
alt_ctg15_1_10
zH337H16
CU655970.6
finished
  GAP (type-3) length unknown    
38 DKEYP-118E10
alt_ctg15_1_11
zKp118E10
BX511308.11
finished
39 DKEY-145M5
alt_ctg15_1_11
zK145M5
BX897686.8
finished
40 CH211-259G3
alt_ctg15_1_11
zC259G3
AL954372.6
finished
  GAP (type-3) length unknown    
42 CH211-214G1
alt_ctg15_1_12
zC214G1
BX571762.15
finished
43 CH211-132F7
alt_ctg15_1_12
zC132F7
CR513790.9
finished
44 CH211-24O10
alt_ctg15_1_12
zC24O10
BX572630.10
finished
  GAP (type-3) length unknown    
46 DKEY-273G16
alt_ctg15_1_13
zK273G16
BX539348.8
finished
47 CH211-69C9
alt_ctg15_1_13
zC69C9
BX005045.10
finished
48 RP71-85J19
alt_ctg15_1_13
bZ85J19
BX469904.11
finished
49 CH211-213D14
alt_ctg15_1_13
zC213D14
CT573342.16
finished
  GAP (type-3) length unknown    
51 DKEY-287F10
alt_ctg15_1_14
zK287F10
AL845312.3
finished
52 CH211-277G22
alt_ctg15_1_14
zC277G22
BX072563.7
finished
53 DKEY-83J7
alt_ctg15_1_14
zK83J7
CR626890.8
finished
54 CH211-62C19
alt_ctg15_1_14
zC62C19
BX324151.12
finished
  GAP (type-3) length unknown    
56 CH211-51K14
alt_ctg15_1_15
zC51K14
AL928724.10
finished
57 DKEY-29H23
alt_ctg15_1_15
zK29H23
BX005374.5
finished
58 CH211-244M22
alt_ctg15_1_15
zC244M22
AL935335.5
finished
59 DKEYP-118B3
alt_ctg15_1_15
zKp118B3
CR853297.8
finished
  GAP (type-3) length unknown    
61 CH211-160P12
alt_ctg15_1_16
zC160P12
CR589948.8
finished
62 DKEY-14B11
alt_ctg15_1_16
zK14B11
BX000431.10
finished
63 DKEY-32O12
alt_ctg15_1_16
zK32O12
BX004802.12
finished
64 DKEY-151P21
alt_ctg15_1_16
zK151P21
CR524483.7
finished
  GAP (type-3) length unknown    
66 DKEY-8N9
alt_ctg15_1_17
zK8N9
CR848837.5
finished
67 DKEY-13N1
alt_ctg15_1_17
zK13N1
AL935302.7
finished
68 CH211-42O7
alt_ctg15_1_17
zC42O7
BX005052.7
finished
  GAP (type-3) length unknown    
70 CH211-229G11
alt_ctg15_1_18
zC229G11
AL954322.4
finished
71 DKEY-28N4
alt_ctg15_1_18
zK28N4
AL954326.7
finished
72 CH211-69P5
alt_ctg15_1_18
zC69P5
AL954187.5
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 133180 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX088654.11 1 133180 +
133181 264361 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX000987.6 19921 151101 -
264362 283722 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR848754.3 1 19361 -
283723 333722 4 N 50000 contig no
333723 362096 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR396585.6 1 28374 +
362097 511415 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL929010.5 1 149319 +
511416 529638 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU571391.3 1 18223 -
529639 579638 8 N 50000 contig no
579639 616648 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL935158.7 1 37010 +
616649 787377 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR589881.11 1 170729 -
787378 961784 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX323573.7 1 174407 -
961785 1011784 12 N 50000 contig no
1011785 1027604 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 BX897750.11 166214 182033 -
1027605 1222748 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 BX901890.16 1 195144 +
1222749 1272748 15 N 50000 contig no
1272749 1387458 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX927244.11 38210 152919 -
1387459 1399080 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CR848009.9 145649 157270 +
1399081 1425035 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 BX927244.11 1 25955 -
1425036 1475035 19 N 50000 contig no
1475036 1515411 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 CR925813.10 8340 48715 -
1515412 1676332 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 BX000997.10 1 160921 +
1676333 1726332 22 N 50000 contig no
1726333 1746354 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 FP236835.6 1 20022 +
1746355 1913760 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AL929103.7 1 167406 +
1913761 1916247 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CR318657.8 148764 151250 +
1916248 1966247 26 N 50000 contig no
1966248 1982872 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 FP236470.24 1 16625 +
1982873 2125436 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 AL928863.14 1 142564 +
2125437 2172528 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CR450848.13 1 47092 -
2172529 2222528 30 N 50000 contig no
2222529 2270121 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CR855391.6 64440 112032 -
2270122 2329193 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CR392353.6 1 59072 +
2329194 2478841 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 CR848661.5 1 149648 -
2478842 2528841 34 N 50000 contig no
2528842 2585631 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 CR848840.14 12654 69443 -
2585632 2801530 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX004818.16 1 215899 -
2801531 2841658 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 CU655970.6 34486 74613 +
2841659 2891658 38 N 50000 contig no
2891659 2927737 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 BX511308.11 1 36079 +
2927738 3042736 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 BX897686.8 178 115176 -
3042737 3170277 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AL954372.6 34999 162539 +
3170278 3220277 42 N 50000 contig no
3220278 3277238 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 BX571762.15 81869 138829 -
3277239 3434650 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 CR513790.9 1 157412 -
3434651 3547431 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 BX572630.10 61536 174316 +
3547432 3597431 46 N 50000 contig no
3597432 3651226 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX539348.8 132622 186416 -
3651227 3813035 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX005045.10 4 161812 +
3813036 3935549 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX469904.11 2001 124514 +
3935550 3992393 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 CT573342.16 1 56844 -
3992394 4042393 51 N 50000 contig no
4042394 4083735 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 55 AL845312.3 133618 174959 -
4083736 4254400 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 55 BX072563.7 1 170665 +
4254401 4463527 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 55 CR626890.8 2001 211127 +
4463528 4496055 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 55 BX324151.12 95908 128435 +
4496056 4546055 56 N 50000 contig no
4546056 4562393 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 60 AL928724.10 148962 165299 -
4562394 4766711 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 60 BX005374.5 1 204318 -
4766712 4962257 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 60 AL935335.5 2004 197549 +
4962258 5127487 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 60 CR853297.8 17054 182283 +
5127488 5177487 61 N 50000 contig no
5177488 5334420 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 65 CR589948.8 5859 162791 -
5334421 5534581 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 65 BX000431.10 1 200161 +
5534582 5628638 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 65 BX004802.12 2001 96057 +
5628639 5796038 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 65 CR524483.7 42943 210342 +
5796039 5846038 66 N 50000 contig no
5846039 5900831 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 CR848837.5 2973 57765 -
5900832 6053518 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 AL935302.7 1 152687 -
6053519 6053867 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 BX005052.7 166551 166899 +
6053868 6103867 70 N 50000 contig no
6103868 6250989 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 AL954322.4 1 147122 +
6250990 6390714 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 AL954326.7 7663 147387 -
6390715 6510307 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 73 AL954187.5 1 119593 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
17
Gap types
type-3
17
Total clones
55
Clone HTGS Phases
finished
55
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,396,765
Total finished length of fin clones w/ overlap
8,088,010
Total finished length of fin clones w/o overlap
5,691,245
Total overlap length of fin+unfin clones
2,396,765
Total finished length of fin+unfin clones w/ overlap
8,088,010
Total finished length of fin+unfin clones w/o overlap
5,691,245

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