ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__4 (TPF updated: 2017-11-22)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
EPN details
CT583719.6
finished
2 DKEY-223L3
alt_ctg4_1_1
CONTAINED
zK223L3
EPN details
CR388075.14
finished
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
EPN details
CT583719.6
finished
  GAP (type-3) length unknown    
4 CH73-148N6
alt_ctg4_1_2
zH148N6
EPN details
FO681357.4
contiguous
5 CH211-136G2
alt_ctg4_1_2
zC136G2
EPN details
BX255970.8
finished
6 CH211-172B12
alt_ctg4_1_2
zC172B12
EPN details
BX537336.19
finished
  GAP (type-3) length unknown    
8 CH73-201B6
alt_ctg4_1_3
zH201B6
EPN details
CU570884.3
finished
9 CH211-240L19
alt_ctg4_1_3
zC240L19
EPN details
BX321885.11
finished
10 DKEY-222L13
alt_ctg4_1_3
zK222L13
EPN details
CU695020.16
finished
  GAP (type-3) length unknown    
12 CH73-139J3
alt_ctg4_1_4
zH139J3
EPN details
CU861462.7
finished
13 DKEY-99O1
alt_ctg4_1_4
zK99O1
EPN details
BX470236.11
finished
14 DKEY-153K10
alt_ctg4_1_4
zK153K10
EPN details
BX901962.8
finished
  GAP (type-3) length unknown    
16 CH73-129N6
alt_ctg4_1_5
zH129N6
EPN details
CT025718.7
finished
17 RP71-18J1
alt_ctg4_1_5
bZ18J1
EPN details
CR925699.6
finished
18 CH211-231H23
alt_ctg4_1_5
zC231H23
EPN details
BX323015.6
finished
19 CH211-161N3
alt_ctg4_1_5
zC161N3
EPN details
CR352306.11
finished
  GAP (type-3) length unknown    
21 DKEY-217M24
alt_ctg4_1_6
zK217M24
EPN details
BX897713.10
finished
22 CH211-243J15
alt_ctg4_1_6
zC243J15
EPN details
BX649527.10
finished
23 DKEY-108D22
alt_ctg4_1_6
zK108D22
EPN details
BX469931.8
finished
  GAP (type-3) length unknown    
25 DKEY-8M7
alt_ctg4_1_7
zK8M7
EPN details
AL844512.16
finished
26 DKEY-109H6
alt_ctg4_1_7
zK109H6
EPN details
CR762442.10
finished
27 CH211-281G7
alt_ctg4_1_7
zC281G7
EPN details
AL954848.9
finished
  GAP (type-3) length unknown    
29 DKEY-47F13
alt_ctg4_1_8
zK47F13
EPN details
CR392369.8
finished
30 CH211-168G7
alt_ctg4_1_8
Cl/Pr zC168G7/zC86K6 swap
EPN details
BX470114.6
finished
31 DKEY-97C7
alt_ctg4_1_8
zK97C7
EPN details
AL935187.13
finished
  GAP (type-3) length unknown    
33 CH211-198G19
alt_ctg4_1_9
zC198G19
EPN details
AL929006.3
finished
34 DKEY-189H14
alt_ctg4_1_9
zK189H14
EPN details
CR631123.6
finished
35 DKEY-56L2
alt_ctg4_1_9
zK56L2
EPN details
AL935319.8
finished
  GAP (type-3) length unknown    
37 DKEYP-89C11
alt_ctg4_1_10
zKp89C11
EPN details
BX511192.4
finished
38 CH211-204F4
alt_ctg4_1_10
zC204F4
EPN details
BX005107.4
finished
39 DKEY-183C16
alt_ctg4_1_10
zK183C16
EPN details
BX640593.8
finished
  GAP (type-3) length unknown    
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
EPN details
CU137645.14
finished
42 DKEY-28G6
alt_ctg4_1_11
CONTAINED
zK28G6
EPN details
BX571815.16
finished
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
EPN details
CU137645.14
finished
  GAP (type-3) length unknown    
44 DKEY-164M14
alt_ctg4_1_12
zK164M14
EPN details
CR751234.13
finished
45 DKEY-200M9
alt_ctg4_1_12
zK200M9
EPN details
BX004862.9
finished
46 DKEY-27F18
alt_ctg4_1_12
zK27F18
EPN details
BX901914.14
finished
  GAP (type-3) length unknown    
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
EPN details
CR847895.8
finished
49 CH211-159C17
alt_ctg4_1_13
CONTAINED
zC159C17
EPN details
BX571692.5
finished
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
EPN details
CR847895.8
finished
50 DKEY-191C11
alt_ctg4_1_13
zK191C11
EPN details
BX511214.8
finished
51 CH211-214C20
alt_ctg4_1_13
zC214C20
EPN details
BX248122.10
finished
  GAP (type-3) length unknown    
53 CH73-42B22
alt_ctg4_1_14
zH42B22
EPN details
CU694452.16
finished
54 CH211-9F23
alt_ctg4_1_14
zC9F23
EPN details
CR392331.15
finished
55 DKEY-262G12
alt_ctg4_1_14
zK262G12
EPN details
BX855614.13
finished
  GAP (type-3) length unknown    
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
EPN details
AL935186.22
finished
58 DKEY-61P9
alt_ctg4_1_15
CONTAINED
zK61P9
EPN details
BX005238.8
finished
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
EPN details
AL935186.22
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 22009 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT583719.6 107087 129095 -
22010 138499 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388075.14 3 116492 +
138500 138520 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT583719.6 1 21 -
138521 188520 4 N 50000 contig no
188521 301558 5 A FO681357.4 1 113038 +
301559 460313 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 BX255970.8 1 158755 +
460314 589134 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 BX537336.19 1 128821 -
589135 639134 8 N 50000 contig no
639135 710944 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU570884.3 7331 79140 -
710945 866593 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX321885.11 1 155649 -
866594 1003276 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU695020.16 16580 153262 +
1003277 1053276 12 N 50000 contig no
1053277 1137814 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU861462.7 11036 95573 -
1137815 1282337 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX470236.11 1 144523 +
1282338 1367691 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX901962.8 97197 182550 +
1367692 1417691 16 N 50000 contig no
1417692 1452303 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CT025718.7 1 34612 +
1452304 1602333 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR925699.6 1 150030 -
1602334 1749617 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX323015.6 2001 149284 +
1749618 1779676 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR352306.11 67708 97766 +
1779677 1829676 21 N 50000 contig no
1829677 1846761 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX897713.10 35485 52569 -
1846762 1998923 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX649527.10 1 152162 +
1998924 2076291 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX469931.8 1 77368 -
2076292 2126291 25 N 50000 contig no
2126292 2240635 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AL844512.16 1 114344 +
2240636 2375784 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 CR762442.10 3 135151 +
2375785 2486265 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AL954848.9 1 110481 -
2486266 2536265 29 N 50000 contig no
2536266 2564406 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CR392369.8 13400 41540 -
2564407 2702951 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 BX470114.6 1 138545 -
2702952 2847255 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AL935187.13 1 144304 -
2847256 2897255 33 N 50000 contig no
2897256 2969400 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 AL929006.3 121010 193154 -
2969401 3107919 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CR631123.6 1 138519 -
3107920 3201223 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 AL935319.8 1 93304 -
3201224 3251223 37 N 50000 contig no
3251224 3357858 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX511192.4 47622 154256 -
3357859 3542534 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX005107.4 2576 187251 +
3542535 3632809 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX640593.8 1 90275 -
3632810 3682809 41 N 50000 contig no
3682810 3822997 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CU137645.14 152797 292984 -
3822998 3928203 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX571815.16 1 105206 +
3928204 3967895 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CU137645.14 1 39692 -
3967896 4017895 45 N 50000 contig no
4017896 4144696 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR751234.13 1 126801 +
4144697 4319055 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX004862.9 1 174359 -
4319056 4360422 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX901914.14 95731 137097 +
4360423 4410422 49 N 50000 contig no
4410423 4457720 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 CR847895.8 106102 153399 -
4457721 4534753 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX571692.5 1 77033 +
4534754 4536758 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 CR847895.8 47925 49929 -
4536759 4748089 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX511214.8 1 211331 +
4748090 4774772 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX248122.10 1 26683 -
4774773 4824772 55 N 50000 contig no
4824773 4847985 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CU694452.16 1 23213 +
4847986 5014384 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR392331.15 3880 170278 -
5014385 5072045 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX855614.13 1 57661 -
5072046 5122045 59 N 50000 contig no
5122046 5145819 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 AL935186.22 142703 166476 -
5145820 5299015 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 BX005238.8 13671 166866 -
5299016 5326848 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 AL935186.22 1 27833 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
-
-
CT583719.6
finished
129095 DanioKey 5' / 5'
107087 / 3
- / -
116492
0
Identified
2017-03-31
agp2oracle
humpub
 
2 DKEY-223L3
alt_ctg4_1_1
CONTAINED
zK223L3
-
-
CR388075.14
finished
116492 DanioKey 3' / 3'
116492 / 21
- / -
116492
0
Identified
2017-03-31
agp2oracle
humpub
 
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
-
-
CT583719.6
finished
129095 DanioKey        
  GAP (type-3) length unknown                  
4 CH73-148N6
alt_ctg4_1_2
zH148N6
-
-
FO681357.4
contiguous
116398 CHORI-73 3' / 5'
113038 / 1
- / -
3360
0
Identified
2017-03-07
agp2oracle
humpub
 
5 CH211-136G2
alt_ctg4_1_2
zC136G2
-
-
BX255970.8
finished
158755 CHORI-211 3' / 3'
158755 / 128821
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-172B12
alt_ctg4_1_2
zC172B12
-
-
BX537336.19
finished
130821 CHORI-211        
  GAP (type-3) length unknown                  
8 CH73-201B6
alt_ctg4_1_3
zH201B6
-
-
CU570884.3
finished
79140 CHORI-73 5' / 3'
7331 / 155649
- / -
7330
0
Identified
2017-03-07
agp2oracle
humpub
 
9 CH211-240L19
alt_ctg4_1_3
zC240L19
-
-
BX321885.11
finished
155649 CHORI-211 5' / 5'
1 / 16580
- / -
16579
0
Identified
2017-03-07
agp2oracle
humpub
 
10 DKEY-222L13
alt_ctg4_1_3
zK222L13
-
-
CU695020.16
finished
153262 DanioKey        
  GAP (type-3) length unknown                  
12 CH73-139J3
alt_ctg4_1_4
zH139J3
-
-
CU861462.7
finished
95573 CHORI-73 5' / 5'
11036 / 1
- / -
11035
0
Identified
2017-03-07
agp2oracle
humpub
 
13 DKEY-99O1
alt_ctg4_1_4
zK99O1
-
-
BX470236.11
finished
144523 DanioKey 3' / 5'
144523 / 97197
- / -
97196
0
Identified
2017-03-07
agp2oracle
humpub
 
14 DKEY-153K10
alt_ctg4_1_4
zK153K10
-
-
BX901962.8
finished
182550 DanioKey        
  GAP (type-3) length unknown                  
16 CH73-129N6
alt_ctg4_1_5
zH129N6
-
-
CT025718.7
finished
65440 CHORI-73 3' / 3'
34612 / 150030
- / -
30828
0
Identified
2017-03-07
agp2oracle
humpub
 
17 RP71-18J1
alt_ctg4_1_5
bZ18J1
-
-
CR925699.6
finished
150030 RPCI-71 5' / 5'
1 / 2001
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
18 CH211-231H23
alt_ctg4_1_5
zC231H23
-
-
BX323015.6
finished
149284 CHORI-211 3' / 5'
149284 / 67708
- / -
67707
0
Identified
2017-03-07
agp2oracle
humpub
 
19 CH211-161N3
alt_ctg4_1_5
zC161N3
-
-
CR352306.11
finished
97766 CHORI-211        
  GAP (type-3) length unknown                  
21 DKEY-217M24
alt_ctg4_1_6
zK217M24
-
-
BX897713.10
finished
52569 DanioKey 5' / 5'
35485 / 1
- / -
35484
0
Identified
2017-03-07
agp2oracle
humpub
 
22 CH211-243J15
alt_ctg4_1_6
zC243J15
-
-
BX649527.10
finished
152164 CHORI-211 3' / 3'
152162 / 77368
- / -
127121
0
Identified
2017-03-07
agp2oracle
humpub
 
23 DKEY-108D22
alt_ctg4_1_6
zK108D22
-
-
BX469931.8
finished
204487 DanioKey        
  GAP (type-3) length unknown                  
25 DKEY-8M7
alt_ctg4_1_7
zK8M7
-
-
AL844512.16
finished
231383 DanioKey 3' / 5'
114344 / 3
- / -
117041
0
Identified
2017-03-07
agp2oracle
humpub
 
26 DKEY-109H6
alt_ctg4_1_7
zK109H6
-
-
CR762442.10
finished
135151 DanioKey 3' / 3'
135151 / 110481
- / -
59697
0
Identified
2017-03-07
agp2oracle
humpub
 
27 CH211-281G7
alt_ctg4_1_7
zC281G7
-
-
AL954848.9
finished
170178 CHORI-211        
  GAP (type-3) length unknown                  
29 DKEY-47F13
alt_ctg4_1_8
zK47F13
-
-
CR392369.8
finished
41540 DanioKey 5' / 3'
13400 / 138545
- / -
13399
0
Identified
2017-03-07
agp2oracle
humpub
 
30 CH211-168G7
alt_ctg4_1_8
zC168G7
-
-
BX470114.6
finished
138545 CHORI-211 5' / 3'
1 / 144304
- / -
119213
0
Identified
2017-03-07
agp2oracle
humpub
 
31 DKEY-97C7
alt_ctg4_1_8
zK97C7
-
-
AL935187.13
finished
263517 DanioKey        
  GAP (type-3) length unknown                  
33 CH211-198G19
alt_ctg4_1_9
zC198G19
-
-
AL929006.3
finished
193154 CHORI-211 5' / 3'
121010 / 138519
- / -
121009
0
Identified
2017-03-07
agp2oracle
humpub
 
34 DKEY-189H14
alt_ctg4_1_9
zK189H14
-
-
CR631123.6
finished
138519 DanioKey 5' / 3'
1 / 93304
- / -
13502
0
Identified
2017-03-07
agp2oracle
humpub
 
35 DKEY-56L2
alt_ctg4_1_9
zK56L2
-
-
AL935319.8
finished
106806 DanioKey        
  GAP (type-3) length unknown                  
37 DKEYP-89C11
alt_ctg4_1_10
zKp89C11
-
-
BX511192.4
finished
154256 DanioKeypilot 5' / 5'
47622 / 2576
- / -
50196
0
Identified
2017-03-07
agp2oracle
humpub
 
38 CH211-204F4
alt_ctg4_1_10
zC204F4
-
-
BX005107.4
finished
187251 CHORI-211 3' / 3'
187251 / 90275
- / -
127917
0
Identified
2017-03-07
agp2oracle
humpub
 
39 DKEY-183C16
alt_ctg4_1_10
zK183C16
-
-
BX640593.8
finished
218192 DanioKey        
  GAP (type-3) length unknown                  
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
-
-
CU137645.14
finished
292984 DanioKey 5' / 5'
152797 / 1
- / -
105739
0
Identified
2017-03-31
agp2oracle
humpub
 
42 DKEY-28G6
alt_ctg4_1_11
CONTAINED
zK28G6
-
-
BX571815.16
finished
105739 DanioKey 3' / 3'
105206 / 39692
- / -
105739
0
Identified
2017-03-31
agp2oracle
humpub
 
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
-
-
CU137645.14
finished
292984 DanioKey        
  GAP (type-3) length unknown                  
44 DKEY-164M14
alt_ctg4_1_12
zK164M14
-
-
CR751234.13
finished
218596 DanioKey 3' / 3'
126801 / 174359
- / -
91795
0
Identified
2017-03-07
agp2oracle
humpub
 
45 DKEY-200M9
alt_ctg4_1_12
zK200M9
-
-
BX004862.9
finished
174359 DanioKey 5' / 5'
1 / 95731
- / -
95730
0
Identified
2017-03-07
agp2oracle
humpub
 
46 DKEY-27F18
alt_ctg4_1_12
zK27F18
-
-
BX901914.14
finished
137097 DanioKey        
  GAP (type-3) length unknown                  
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
-
-
CR847895.8
finished
153399 CHORI-211 5' / 5'
106102 / 1
- / -
77033
0
Identified
2017-03-07
agp2oracle
humpub
 
49 CH211-159C17
alt_ctg4_1_13
CONTAINED
zC159C17
-
-
BX571692.5
finished
77033 CHORI-211 3' / 3'
77033 / 49929
- / -
77033
0
Identified
2017-03-07
agp2oracle
humpub
 
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
-
-
CR847895.8
finished
153399 CHORI-211 5' / 5'
47925 / 1
- / -
47924
0
Identified
2017-03-07
agp2oracle
humpub
 
50 DKEY-191C11
alt_ctg4_1_13
zK191C11
-
-
BX511214.8
finished
211331 DanioKey 3' / 3'
211331 / 26683
- / -
189525
0
Identified
2017-03-07
agp2oracle
humpub
 
51 CH211-214C20
alt_ctg4_1_13
zC214C20
-
-
BX248122.10
finished
216208 CHORI-211        
  GAP (type-3) length unknown                  
53 CH73-42B22
alt_ctg4_1_14
zH42B22
-
-
CU694452.16
finished
80843 CHORI-73 3' / 3'
23213 / 170278
- / -
57630
0
Identified
2017-03-07
agp2oracle
humpub
 
54 CH211-9F23
alt_ctg4_1_14
zC9F23
-
-
CR392331.15
finished
170278 CHORI-211 5' / 3'
3880 / 57661
- / -
103812
0
Identified
2017-03-07
agp2oracle
humpub
 
55 DKEY-262G12
alt_ctg4_1_14
zK262G12
-
-
BX855614.13
finished
157594 DanioKey        
  GAP (type-3) length unknown                  
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
-
-
AL935186.22
finished
166476 CHORI-211 5' / 3'
142703 / 166866
- / -
166866
0
Identified
2017-03-31
agp2oracle
humpub
 
58 DKEY-61P9
alt_ctg4_1_15
CONTAINED
zK61P9
-
-
BX005238.8
finished
166866 DanioKey 5' / 3'
13671 / 27833
- / -
166866
0
Identified
2017-03-31
agp2oracle
humpub
 
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
-
-
AL935186.22
finished
166476 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
14
Gap types
type-3
14
Total clones
44
Clone HTGS Phases
contiguous
1
finished
43
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,201,059
Total finished length of fin clones w/ overlap
6,524,895
Total finished length of fin clones w/o overlap
4,323,836
Total overlap length of fin+unfin clones
2,204,419
Total finished length of fin+unfin clones w/ overlap
6,641,293
Total finished length of fin+unfin clones w/o overlap
4,436,874

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