ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__4 (TPF updated: 2017-09-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
CT583719.6
finished
2 DKEY-223L3
alt_ctg4_1_1
CONTAINED
zK223L3
CR388075.14
finished
1 DKEY-112E7
alt_ctg4_1_1
CONTAINER
zK112E7
CT583719.6
finished
  GAP (type-3) length unknown    
4 CH73-148N6
alt_ctg4_1_2
zH148N6
FO681357.4
contiguous
5 CH211-136G2
alt_ctg4_1_2
zC136G2
BX255970.8
finished
6 CH211-172B12
alt_ctg4_1_2
zC172B12
BX537336.19
finished
  GAP (type-3) length unknown    
8 CH73-201B6
alt_ctg4_1_3
zH201B6
CU570884.3
finished
9 CH211-240L19
alt_ctg4_1_3
zC240L19
BX321885.11
finished
10 DKEY-222L13
alt_ctg4_1_3
zK222L13
CU695020.16
finished
  GAP (type-3) length unknown    
12 CH73-139J3
alt_ctg4_1_4
zH139J3
CU861462.7
finished
13 DKEY-99O1
alt_ctg4_1_4
zK99O1
BX470236.11
finished
14 DKEY-153K10
alt_ctg4_1_4
zK153K10
BX901962.8
finished
  GAP (type-3) length unknown    
16 CH73-129N6
alt_ctg4_1_5
zH129N6
CT025718.7
finished
17 RP71-18J1
alt_ctg4_1_5
bZ18J1
CR925699.6
finished
18 CH211-231H23
alt_ctg4_1_5
zC231H23
BX323015.6
finished
19 CH211-161N3
alt_ctg4_1_5
zC161N3
CR352306.11
finished
  GAP (type-3) length unknown    
21 DKEY-217M24
alt_ctg4_1_6
zK217M24
BX897713.10
finished
22 CH211-243J15
alt_ctg4_1_6
zC243J15
BX649527.10
finished
23 DKEY-108D22
alt_ctg4_1_6
zK108D22
BX469931.8
finished
  GAP (type-3) length unknown    
25 DKEY-8M7
alt_ctg4_1_7
zK8M7
AL844512.16
finished
26 DKEY-109H6
alt_ctg4_1_7
zK109H6
CR762442.10
finished
27 CH211-281G7
alt_ctg4_1_7
zC281G7
AL954848.9
finished
  GAP (type-3) length unknown    
29 DKEY-47F13
alt_ctg4_1_8
zK47F13
CR392369.8
finished
30 CH211-168G7
alt_ctg4_1_8
zC168G7
BX470114.6
finished
31 DKEY-97C7
alt_ctg4_1_8
zK97C7
AL935187.13
finished
  GAP (type-3) length unknown    
33 CH211-198G19
alt_ctg4_1_9
zC198G19
AL929006.3
finished
34 DKEY-189H14
alt_ctg4_1_9
zK189H14
CR631123.6
finished
35 DKEY-56L2
alt_ctg4_1_9
zK56L2
AL935319.8
finished
  GAP (type-3) length unknown    
37 DKEYP-89C11
alt_ctg4_1_10
zKp89C11
BX511192.4
finished
38 CH211-204F4
alt_ctg4_1_10
zC204F4
BX005107.4
finished
39 DKEY-183C16
alt_ctg4_1_10
zK183C16
BX640593.8
finished
  GAP (type-3) length unknown    
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
CU137645.14
finished
42 DKEY-28G6
alt_ctg4_1_11
CONTAINED
zK28G6
BX571815.16
finished
41 DKEY-193G4
alt_ctg4_1_11
CONTAINER
zK193G4
CU137645.14
finished
  GAP (type-3) length unknown    
44 DKEY-164M14
alt_ctg4_1_12
zK164M14
CR751234.13
finished
45 DKEY-200M9
alt_ctg4_1_12
zK200M9
BX004862.9
finished
46 DKEY-27F18
alt_ctg4_1_12
zK27F18
BX901914.14
finished
  GAP (type-3) length unknown    
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
CR847895.8
finished
49 CH211-159C17
alt_ctg4_1_13
CONTAINED
zC159C17
BX571692.5
finished
48 CH211-271B21
alt_ctg4_1_13
CONTAINER
zC271B21
CR847895.8
finished
50 DKEY-191C11
alt_ctg4_1_13
zK191C11
BX511214.8
finished
51 CH211-214C20
alt_ctg4_1_13
zC214C20
BX248122.10
finished
  GAP (type-3) length unknown    
53 CH73-42B22
alt_ctg4_1_14
zH42B22
CU694452.16
finished
54 CH211-9F23
alt_ctg4_1_14
zC9F23
CR392331.15
finished
55 DKEY-262G12
alt_ctg4_1_14
zK262G12
BX855614.13
finished
  GAP (type-3) length unknown    
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
AL935186.22
finished
58 DKEY-61P9
alt_ctg4_1_15
CONTAINED
zK61P9
BX005238.8
finished
57 CH211-250M6
alt_ctg4_1_15
CONTAINER
zC250M6
AL935186.22
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 22009 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT583719.6 107087 129095 -
22010 138499 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388075.14 3 116492 +
138500 138520 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT583719.6 1 21 -
138521 188520 4 N 50000 contig no
188521 301558 5 A FO681357.4 1 113038 +
301559 460313 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 BX255970.8 1 158755 +
460314 589134 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 BX537336.19 1 128821 -
589135 639134 8 N 50000 contig no
639135 710944 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU570884.3 7331 79140 -
710945 866593 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX321885.11 1 155649 -
866594 1003276 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU695020.16 16580 153262 +
1003277 1053276 12 N 50000 contig no
1053277 1137814 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU861462.7 11036 95573 -
1137815 1282337 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX470236.11 1 144523 +
1282338 1367691 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX901962.8 97197 182550 +
1367692 1417691 16 N 50000 contig no
1417692 1452303 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CT025718.7 1 34612 +
1452304 1602333 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR925699.6 1 150030 -
1602334 1749617 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX323015.6 2001 149284 +
1749618 1779676 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 CR352306.11 67708 97766 +
1779677 1829676 21 N 50000 contig no
1829677 1846761 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX897713.10 35485 52569 -
1846762 1998923 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX649527.10 1 152162 +
1998924 2076291 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX469931.8 1 77368 -
2076292 2126291 25 N 50000 contig no
2126292 2240635 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AL844512.16 1 114344 +
2240636 2375784 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 CR762442.10 3 135151 +
2375785 2486265 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AL954848.9 1 110481 -
2486266 2536265 29 N 50000 contig no
2536266 2564406 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CR392369.8 13400 41540 -
2564407 2702951 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 BX470114.6 1 138545 -
2702952 2847255 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AL935187.13 1 144304 -
2847256 2897255 33 N 50000 contig no
2897256 2969400 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 AL929006.3 121010 193154 -
2969401 3107919 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CR631123.6 1 138519 -
3107920 3201223 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 AL935319.8 1 93304 -
3201224 3251223 37 N 50000 contig no
3251224 3357858 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX511192.4 47622 154256 -
3357859 3542534 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX005107.4 2576 187251 +
3542535 3632809 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX640593.8 1 90275 -
3632810 3682809 41 N 50000 contig no
3682810 3822997 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CU137645.14 152797 292984 -
3822998 3928203 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX571815.16 1 105206 +
3928204 3967895 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CU137645.14 1 39692 -
3967896 4017895 45 N 50000 contig no
4017896 4144696 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR751234.13 1 126801 +
4144697 4319055 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX004862.9 1 174359 -
4319056 4360422 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX901914.14 95731 137097 +
4360423 4410422 49 N 50000 contig no
4410423 4457720 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 CR847895.8 106102 153399 -
4457721 4534753 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX571692.5 1 77033 +
4534754 4536758 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 CR847895.8 47925 49929 -
4536759 4748089 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX511214.8 1 211331 +
4748090 4774772 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 54 BX248122.10 1 26683 -
4774773 4824772 55 N 50000 contig no
4824773 4847985 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CU694452.16 1 23213 +
4847986 5014384 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR392331.15 3880 170278 -
5014385 5072045 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX855614.13 1 57661 -
5072046 5122045 59 N 50000 contig no
5122046 5145819 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 AL935186.22 142703 166476 -
5145820 5299015 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 BX005238.8 13671 166866 -
5299016 5326848 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 AL935186.22 1 27833 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
14
Gap types
type-3
14
Total clones
44
Clone HTGS Phases
contiguous
1
finished
43
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,201,059
Total finished length of fin clones w/ overlap
6,524,895
Total finished length of fin clones w/o overlap
4,323,836
Total overlap length of fin+unfin clones
2,204,419
Total finished length of fin+unfin clones w/ overlap
6,641,293
Total finished length of fin+unfin clones w/o overlap
4,436,874

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