ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__19 (TPF updated: 2018-01-16)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-184J23
alt_ctg19_1_1
zK184J23
EPN details
BX890591.12
finished
2 RP71-18L21
alt_ctg19_1_1
bZ18L21
EPN details
CR847882.13
finished
3 CH73-364O13
alt_ctg19_1_1
zH364O13
EPN details
CU915805.6
finished
  GAP (type-3) length unknown    
5 CH211-143E20
alt_ctg19_1_2
zC143E20
EPN details
BX511014.4
finished
6 CH211-194E15
alt_ctg19_1_2
zC194E15
EPN details
BX547927.10
finished
  GAP (type-3) length unknown    
8 DKEY-22I11
alt_ctg19_1_3
zK22I11
EPN details
BX957237.11
finished
9 CH211-285O8
alt_ctg19_1_3
zC285O8
EPN details
BX957323.7
finished
10 CH211-158I11
alt_ctg19_1_3
zC158I11
EPN details
BX950173.7
finished
11 CH211-195L15
alt_ctg19_1_3
zC195L15
EPN details
BX572629.8
finished
12 CH211-81E5
alt_ctg19_1_3
zC81E5
EPN details
BX511258.6
finished
13 DKEY-218N20
alt_ctg19_1_3
zK218N20
EPN details
BX957279.13
finished
  GAP (type-3) length unknown    
15 DKEY-173N20
alt_ctg19_1_4
zK173N20
EPN details
BX957239.7
finished
16 CH211-203L9
alt_ctg19_1_4
zC203L9
EPN details
BX119962.3
finished
  GAP (type-3) length unknown    
18 CH73-352F21
alt_ctg19_1_5
zH352F21
EPN details
CU633194.8
finished
19 CH211-134F7
alt_ctg19_1_5
zC134F7
EPN details
BX004837.9
finished
20 CH211-125A6
alt_ctg19_1_5
zC125A6
EPN details
CR382336.11
finished
  GAP (type-3) length unknown    
22 DKEY-148N22
alt_ctg19_1_6
zK148N22
EPN details
CR318628.8
finished
23 DKEY-192I20
alt_ctg19_1_6
zK192I20
EPN details
BX284616.13
finished
24 DKEY-284P5
alt_ctg19_1_6
zK284P5
EPN details
CR749175.10
finished
  GAP (type-3) length unknown    
26 CH211-215I13
alt_ctg19_1_7
zC215I13
EPN details
AL807244.7
finished
27 DKEY-22K18
alt_ctg19_1_7
zK22K18
EPN details
BX248241.20
finished
28 DKEY-5E12
alt_ctg19_1_7
zK5E12
EPN details
BX004966.12
finished
  GAP (type-3) length unknown    
30 CH73-50P12
alt_ctg19_1_8
zH50P12
EPN details
CU469581.10
finished
31 DKEY-14J6
alt_ctg19_1_8
zK14J6
EPN details
AL974310.15
finished
32 DKEY-1N7
alt_ctg19_1_8
zK1N7
EPN details
BX957260.10
finished
  GAP (type-3) length unknown    
34 CH211-287B5
alt_ctg19_1_9
zC287B5
EPN details
BX936336.10
finished
35 CH211-62D7
alt_ctg19_1_9
zC62D7
EPN details
CR855268.9
finished
36
alt_ctg19_1_9
CABZ01060512
CABZ01060512.1
finished
  GAP (type-3) length unknown    
38 CH211-128D6
alt_ctg19_1_10
zC128D6
EPN details
CT027724.7
finished
39 CH211-77K19
alt_ctg19_1_10
zC77K19
EPN details
BX005455.8
finished
40 CH211-120E1
alt_ctg19_1_10
zC120E1
EPN details
BX537314.17
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 68269 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX890591.12 102811 171079 -
68270 217301 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR847882.13 1 149032 -
217302 267719 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU915805.6 27373 77790 +
267720 317719 4 N 50000 contig no
317720 472580 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX511014.4 1 154861 -
472581 527714 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX547927.10 1 55134 -
527715 577714 7 N 50000 contig no
577715 651010 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX957237.11 1 73296 -
651011 756172 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX957323.7 1 105162 -
756173 822800 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX950173.7 1 66628 -
822801 991771 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX572629.8 1 168971 -
991772 1181895 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX511258.6 7953 198076 -
1181896 1247944 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 13 BX957279.13 1 66049 -
1247945 1297944 14 N 50000 contig no
1297945 1480376 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 16 BX957239.7 1 182432 -
1480377 1568121 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 16 BX119962.3 102958 190702 +
1568122 1618121 17 N 50000 contig no
1618122 1649612 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CU633194.8 1 31491 +
1649613 1837937 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX004837.9 1 188325 +
1837938 1848432 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CR382336.11 1 10495 -
1848433 1898432 21 N 50000 contig no
1898433 1971258 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CR318628.8 42830 115655 -
1971259 2194831 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX284616.13 1 223573 +
2194832 2216956 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CR749175.10 6802 28926 +
2216957 2266956 25 N 50000 contig no
2266957 2374031 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AL807244.7 94671 201745 -
2374032 2475626 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX248241.20 1 101595 +
2475627 2607845 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 BX004966.12 2118 134336 +
2607846 2657845 29 N 50000 contig no
2657846 2669978 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CU469581.10 1 12133 +
2669979 2853842 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AL974310.15 1 183864 -
2853843 2890461 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 BX957260.10 152255 188873 +
2890462 2940461 33 N 50000 contig no
2940462 2974508 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 BX936336.10 117741 151787 -
2974509 3145266 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CR855268.9 73 170830 +
3145267 3149444 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CABZ01060512.1 19703 23880 +
3149445 3199444 37 N 50000 contig no
3199445 3345479 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 CT027724.7 1 146035 +
3345480 3355075 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX005455.8 155146 164741 +
3355076 3510790 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 BX537314.17 12824 168538 +

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-184J23
alt_ctg19_1_1
zK184J23
-
-
BX890591.12
finished
171079 DanioKey 5' / 3'
102811 / 149032
- / -
102845
0
Identified
2017-03-07
agp2oracle
humpub
 
2 RP71-18L21
alt_ctg19_1_1
bZ18L21
-
-
CR847882.13
finished
149067 RPCI-71 5' / 5'
1 / 27373
- / -
27372
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH73-364O13
alt_ctg19_1_1
zH364O13
-
-
CU915805.6
finished
77790 CHORI-73        
  GAP (type-3) length unknown                  
5 CH211-143E20
alt_ctg19_1_2
zC143E20
-
-
BX511014.4
finished
154861 CHORI-211 5' / 3'
1 / 55134
- / -
160364
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-194E15
alt_ctg19_1_2
zC194E15
-
-
BX547927.10
finished
215498 CHORI-211        
  GAP (type-3) length unknown                  
8 DKEY-22I11
alt_ctg19_1_3
zK22I11
-
-
BX957237.11
finished
73296 DanioKey 5' / 3'
1 / 105162
- / -
2000
0
Identified
2017-03-17
agp2oracle
humpub
 
9 CH211-285O8
alt_ctg19_1_3
zC285O8
-
-
BX957323.7
finished
107162 CHORI-211 5' / 3'
1 / 66628
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-158I11
alt_ctg19_1_3
zC158I11
-
-
BX950173.7
finished
68628 CHORI-211 5' / 3'
1 / 168971
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-195L15
alt_ctg19_1_3
zC195L15
-
-
BX572629.8
finished
170971 CHORI-211 5' / 3'
1 / 198076
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
12 CH211-81E5
alt_ctg19_1_3
zC81E5
-
-
BX511258.6
finished
200076 CHORI-211 5' / 3'
7953 / 66049
- / -
140655
0
Identified
2017-03-07
agp2oracle
humpub
 
13 DKEY-218N20
alt_ctg19_1_3
zK218N20
-
-
BX957279.13
finished
198752 DanioKey        
  GAP (type-3) length unknown                  
15 DKEY-173N20
alt_ctg19_1_4
zK173N20
-
-
BX957239.7
finished
182432 DanioKey 5' / 5'
1 / 102958
- / -
102957
0
Identified
2017-03-07
agp2oracle
humpub
 
16 CH211-203L9
alt_ctg19_1_4
zC203L9
-
-
BX119962.3
finished
190702 CHORI-211        
  GAP (type-3) length unknown                  
18 CH73-352F21
alt_ctg19_1_5
zH352F21
-
-
CU633194.8
finished
41367 CHORI-73 3' / 5'
31491 / 1
- / -
9876
0
Identified
2017-03-07
agp2oracle
humpub
 
19 CH211-134F7
alt_ctg19_1_5
zC134F7
-
-
BX004837.9
finished
188325 CHORI-211 3' / 3'
188325 / 10495
- / -
165161
0
Identified
2017-03-07
agp2oracle
humpub
 
20 CH211-125A6
alt_ctg19_1_5
zC125A6
-
-
CR382336.11
finished
175656 CHORI-211        
  GAP (type-3) length unknown                  
22 DKEY-148N22
alt_ctg19_1_6
zK148N22
-
-
CR318628.8
finished
115655 DanioKey 5' / 5'
42830 / 1
- / -
42829
0
Identified
2017-03-07
agp2oracle
humpub
 
23 DKEY-192I20
alt_ctg19_1_6
zK192I20
-
-
BX284616.13
finished
223573 DanioKey 3' / 5'
223573 / 6802
- / -
6801
0
Identified
2017-03-07
agp2oracle
humpub
 
24 DKEY-284P5
alt_ctg19_1_6
zK284P5
-
-
CR749175.10
finished
28926 DanioKey        
  GAP (type-3) length unknown                  
26 CH211-215I13
alt_ctg19_1_7
zC215I13
-
-
AL807244.7
finished
201745 CHORI-211 5' / 5'
94671 / 1
- / -
94670
0
Identified
2017-03-07
agp2oracle
humpub
 
27 DKEY-22K18
alt_ctg19_1_7
zK22K18
-
-
BX248241.20
finished
101595 DanioKey 3' / 5'
101595 / 2118
- / -
2117
0
Identified
2017-03-07
agp2oracle
humpub
 
28 DKEY-5E12
alt_ctg19_1_7
zK5E12
-
-
BX004966.12
finished
134336 DanioKey        
  GAP (type-3) length unknown                  
30 CH73-50P12
alt_ctg19_1_8
zH50P12
-
-
CU469581.10
finished
60411 CHORI-73 3' / 3'
12133 / 183864
- / -
48278
0
Identified
2017-03-07
agp2oracle
humpub
 
31 DKEY-14J6
alt_ctg19_1_8
zK14J6
-
-
AL974310.15
finished
183864 DanioKey 5' / 5'
1 / 152255
- / -
152254
0
Identified
2017-03-07
agp2oracle
humpub
 
32 DKEY-1N7
alt_ctg19_1_8
zK1N7
-
-
BX957260.10
finished
188873 DanioKey        
  GAP (type-3) length unknown                  
34 CH211-287B5
alt_ctg19_1_9
zC287B5
-
-
BX936336.10
finished
151787 CHORI-211 5' / 5'
117741 / 73
- / -
117812
0
Identified
2017-03-07
agp2oracle
humpub
 
35 CH211-62D7
alt_ctg19_1_9
zC62D7
-
-
CR855268.9
finished
170830 CHORI-211 3' / 5'
170830 / 19703
- / -
19702
0
Identified
2017-03-07
agp2oracle
humpub
 
36
alt_ctg19_1_9
CABZ01060512
-
-
CABZ01060512.1
finished
23880 -        
  GAP (type-3) length unknown                  
38 CH211-128D6
alt_ctg19_1_10
zC128D6
-
-
CT027724.7
finished
146035 CHORI-211 3' / 5'
146035 / 155146
- / -
155145
0
Identified
2017-03-07
agp2oracle
humpub
 
39 CH211-77K19
alt_ctg19_1_10
zC77K19
-
-
BX005455.8
finished
164741 CHORI-211 3' / 5'
164741 / 12824
- / -
12823
0
Identified
2017-03-07
agp2oracle
humpub
 
40 CH211-120E1
alt_ctg19_1_10
zC120E1
-
-
BX537314.17
finished
168538 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
9
Gap types
type-3
9
Total clones
31
Clone HTGS Phases
finished
31
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,422,794
Total finished length of fin clones w/ overlap
4,430,451
Total finished length of fin clones w/o overlap
3,007,657
Total overlap length of fin+unfin clones
1,422,794
Total finished length of fin+unfin clones w/ overlap
4,430,451
Total finished length of fin+unfin clones w/o overlap
3,007,657

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