ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__21 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-93M18
alt_ctg21_1_1
zK93M18
BX530036.7
finished
2 CH211-137A2
alt_ctg21_1_1
zC137A2
AL929250.8
finished
3 DKEY-245E8
alt_ctg21_1_1
zK245E8
CR749174.13
finished
  GAP (type-3) length unknown    
5 CH211-181B18
alt_ctg21_1_2
zC181B18
CR376852.17
finished
6 CH211-147L19
alt_ctg21_1_2
zC147L19
CR759923.6
finished
7 CH211-196I2
alt_ctg21_1_2
zC196I2
CR392357.6
finished
  GAP (type-3) length unknown    
9 DKEYP-23F6
alt_ctg21_1_3
zKp23F6
CR392036.21
finished
10 DKEY-16H22
alt_ctg21_1_3
zK16H22
CR936260.6
finished
11 CH73-7A17
alt_ctg21_1_3
zH7A17
CU929496.7
finished
  GAP (type-3) length unknown    
13 DKEY-11O15
alt_ctg21_1_4
zK11O15
BX901878.6
finished
14 DKEYP-75A7
alt_ctg21_1_4
zKp75A7
BX284112.25
finished
15 CH73-19K19
alt_ctg21_1_4
zH19K19
CU019551.5
finished
  GAP (type-3) length unknown    
17 DKEYP-87D8
alt_ctg21_1_5
zKp87D8
CR847785.15
finished
18 DKEYP-111B3
alt_ctg21_1_5
zKp111B3
BX530059.4
finished
19 CH211-32G22
alt_ctg21_1_5
zC32G22
CU464115.10
finished
  GAP (type-3) length unknown    
21 CH73-356P13
alt_ctg21_1_6
zH356P13
CU459071.6
finished
22 DKEY-18F18
alt_ctg21_1_6
zK18F18
BX004822.12
finished
23 CH211-271P5
alt_ctg21_1_6
zC271P5
BX255929.8
finished
  GAP (type-3) length unknown    
25 CH73-152D7
alt_ctg21_1_7
zH152D7
CU138576.9
finished
26 CH211-207A8
alt_ctg21_1_7
zC207A8
CU104694.12
finished
27 DKEY-237I15
alt_ctg21_1_7
zK237I15
BX005302.8
finished
  GAP (type-3) length unknown    
29 CH211-196O18
alt_ctg21_1_8
zC196O18
BX088716.7
finished
30 DKEYP-10E10
alt_ctg21_1_8
zKp10E10
CR394540.10
finished
31 DKEYP-46G10
alt_ctg21_1_8
zKp46G10
CR762400.8
finished
  GAP (type-3) length unknown    
33 DKEYP-116H7
alt_ctg21_1_9
zKp116H7
CR812470.8
finished
34 CH211-287M22
alt_ctg21_1_9
zC287M22
BX640581.8
finished
35 CH1073-47M16
alt_ctg21_1_9
zFD47M16
FP101878.3
finished
  GAP (type-3) length unknown    
37 CH211-85E10
alt_ctg21_1_10
zC85E10
BX649525.15
finished
38 CH73-28J10
alt_ctg21_1_10
zH28J10
CU915804.6
finished
39 CH211-59C8
alt_ctg21_1_10
zC59C8
BX004847.31
finished
40 CH211-262I10
alt_ctg21_1_10
zC262I10
BX927394.14
finished
  GAP (type-3) length unknown    
42 DKEY-250J7
alt_ctg21_1_11
zK250J7
BX511222.10
finished
43 CH211-121H6
alt_ctg21_1_11
zC121H6
CU138573.7
finished
44 DKEY-247M21
alt_ctg21_1_11
zK247M21
BX248308.11
finished
  GAP (type-3) length unknown    
46 CH211-208I16
alt_ctg21_1_12
zC208I16
BX530056.17
finished
47 CH211-174L22
alt_ctg21_1_12
CONTAINER
zC174L22
AL773542.11
finished
48 DKEY-57C9
alt_ctg21_1_12
CONTAINED
zK57C9
BX640476.7
finished
47 CH211-174L22
alt_ctg21_1_12
CONTAINER
zC174L22
AL773542.11
finished
  GAP (type-3) length unknown    
50 CH73-82A9
alt_ctg21_1_13
zH82A9
CU928016.6
finished
51 DKEY-282G23
alt_ctg21_1_13
zK282G23
CR388388.8
finished
52 DKEY-57F1
alt_ctg21_1_13
zK57F1
CR854959.9
finished
  GAP (type-3) length unknown    
54 DKEYP-69C1
alt_ctg21_1_14
zKp69C1
BX510940.8
finished
55 RP71-1P14
alt_ctg21_1_14
bZ1P14
AL627325.6
finished
56 CH73-115D3
alt_ctg21_1_14
zH115D3
CU928848.11
finished
  GAP (type-3) length unknown    
58 DKEY-192M20
alt_ctg21_1_15
zK192M20
CR749161.4
finished
59 CH211-42G2
alt_ctg21_1_15
CONTAINER
zC42G2
BX890629.6
finished
60 CH211-204E13
alt_ctg21_1_15
CONTAINED
zC204E13
BX004865.3
finished
59 CH211-42G2
alt_ctg21_1_15
CONTAINER
zC42G2
BX890629.6
finished
  GAP (type-3) length unknown    
62 DKEY-197A18
alt_ctg21_1_16
zK197A18
BX511175.6
finished
63 DKEY-225P19
alt_ctg21_1_16
zK225P19
CR381637.5
finished
64 CH211-196O14
alt_ctg21_1_16
zC196O14
CR405687.7
finished
  GAP (type-3) length unknown    
66 DKEY-28J24
alt_ctg21_1_17
zK28J24
BX511225.7
finished
67 CH211-11F22
alt_ctg21_1_17
zC11F22
BX005140.18
finished
68 DKEY-280K16
alt_ctg21_1_17
zK280K16
CU019662.7
finished
  GAP (type-3) length unknown    
70 DKEY-228B12
alt_ctg21_1_18
zK228B12
CT573493.8
finished
71 CH211-208J14
alt_ctg21_1_18
zC208J14
CU151888.9
finished
  GAP (type-3) length unknown    
73 DKEY-212J2
alt_ctg21_1_19
zK212J2
CR762496.7
finished
74 DKEY-192J13
alt_ctg21_1_19
zK192J13
CT998559.8
finished
75 CH211-213N8
alt_ctg21_1_19
zC213N8
CT027760.15
finished
  GAP (type-3) length unknown    
77 DKEY-101D4
alt_ctg21_1_20
zK101D4
BX936442.10
finished
78 CH211-201F1
alt_ctg21_1_20
zC201F1
BX936451.13
finished
79 CH211-241L3
alt_ctg21_1_20
zC241L3
AL935199.4
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 160906 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX530036.7 1 160906 +
160907 225146 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL929250.8 30295 94534 +
225147 270219 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR749174.13 1 45073 -
270220 320219 4 N 50000 contig no
320220 452710 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR376852.17 1 132491 +
452711 600274 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR759923.6 1 147564 -
600275 627543 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR392357.6 109523 136791 +
627544 677543 8 N 50000 contig no
677544 810456 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR392036.21 1 132913 +
810457 1022919 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR936260.6 1 212463 +
1022920 1073907 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CU929496.7 1 50988 -
1073908 1123907 12 N 50000 contig no
1123908 1178298 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX901878.6 162920 217310 -
1178299 1394774 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX284112.25 1 216476 +
1394775 1396768 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU019551.5 25059 27052 +
1396769 1446768 16 N 50000 contig no
1446769 1471683 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR847785.15 1 24915 +
1471684 1650728 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX530059.4 1 179045 +
1650729 1674288 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CU464115.10 40470 64029 +
1674289 1724288 20 N 50000 contig no
1724289 1789015 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CU459071.6 39499 104225 -
1789016 1990917 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX004822.12 1 201902 -
1990918 2006443 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX255929.8 1 15526 -
2006444 2056443 24 N 50000 contig no
2056444 2103468 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CU138576.9 1 47025 -
2103469 2254866 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CU104694.12 47907 199304 +
2254867 2313038 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX005302.8 1 58172 -
2313039 2363038 28 N 50000 contig no
2363039 2474149 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 BX088716.7 44969 156079 -
2474150 2633042 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR394540.10 449 159341 -
2633043 2745851 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR762400.8 40822 153630 +
2745852 2795851 32 N 50000 contig no
2795852 2908535 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR812470.8 1 112684 +
2908536 3049909 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX640581.8 1 141374 -
3049910 3071996 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 FP101878.3 1 22087 -
3071997 3121996 36 N 50000 contig no
3121997 3300580 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 BX649525.15 736 179319 -
3300581 3345659 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 CU915804.6 1 45079 -
3345660 3522038 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 BX004847.31 1 176379 -
3522039 3664920 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 BX927394.14 22018 164899 +
3664921 3714920 41 N 50000 contig no
3714921 3800965 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX511222.10 1 86045 +
3800966 3960206 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CU138573.7 1 159241 +
3960207 4086351 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX248308.11 45462 171606 +
4086352 4136351 45 N 50000 contig no
4136352 4372129 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 49 BX530056.17 1 235778 +
4372130 4374104 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 49 AL773542.11 20519 22493 +
4374105 4499895 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 49 BX640476.7 1 125791 +
4499896 4517394 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 49 AL773542.11 145945 163443 +
4517395 4567394 50 N 50000 contig no
4567395 4590137 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 CU928016.6 17659 40401 -
4590138 4690643 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 CR388388.8 1 100506 +
4690644 4848650 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 CR854959.9 1 158007 -
4848651 4898650 54 N 50000 contig no
4898651 5069255 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 BX510940.8 2001 172605 -
5069256 5233137 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 AL627325.6 1 163882 -
5233138 5235131 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CU928848.11 59548 61541 +
5235132 5285131 58 N 50000 contig no
5285132 5329943 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 CR749161.4 1 44812 -
5329944 5329944 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 BX890629.6 2001 2001 +
5329945 5473081 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 BX004865.3 1 143137 -
5473082 5491395 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 BX890629.6 150855 169168 +
5491396 5541395 63 N 50000 contig no
5541396 5616833 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 BX511175.6 1 75438 +
5616834 5788058 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR381637.5 1 171225 +
5788059 5863645 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR405687.7 21057 96643 +
5863646 5913645 67 N 50000 contig no
5913646 6142702 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 70 BX511225.7 27619 256675 -
6142703 6319601 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 70 BX005140.18 414 177312 -
6319602 6409745 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 70 CU019662.7 18655 108798 +
6409746 6459745 71 N 50000 contig no
6459746 6500828 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 CT573493.8 10536 51618 -
6500829 6709170 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 CU151888.9 1 208342 -
6709171 6759170 74 N 50000 contig no
6759171 6819883 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 CR762496.7 179068 239780 -
6819884 7056702 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 CT998559.8 2 236820 +
7056703 7102039 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 77 CT027760.15 1 45337 -
7102040 7152039 78 N 50000 contig no
7152040 7379760 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 BX936442.10 2001 229721 -
7379761 7544964 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 BX936451.13 4625 169828 -
7544965 7639144 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 AL935199.4 1 94180 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
19
Gap types
type-3
19
Total clones
60
Clone HTGS Phases
finished
60
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,187,010
Total finished length of fin clones w/ overlap
8,842,281
Total finished length of fin clones w/o overlap
6,655,271
Total overlap length of fin+unfin clones
2,187,010
Total finished length of fin+unfin clones w/ overlap
8,842,281
Total finished length of fin+unfin clones w/o overlap
6,655,271

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