ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__16 (TPF updated: 2017-11-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-4E22
alt_ctg16_1_1
zK4E22
CR385082.11
finished
2 DKEY-208J8
alt_ctg16_1_1
zK208J8
CR388060.19
finished
3 CH211-256M12
alt_ctg16_1_1
zC256M12
BX927222.8
finished
  GAP (type-3) length unknown    
5 CH211-160K2
alt_ctg16_1_2
zC160K2
AL935025.11
finished
6 DKEY-237G17
alt_ctg16_1_2
zK237G17
AL844171.13
finished
7 CH211-195I24
alt_ctg16_1_2
zC195I24
BX470242.10
finished
  GAP (type-3) length unknown    
9 CH211-198O19
alt_ctg16_1_3
CONTAINER
zC198O19
AL845419.18
finished
10 CH211-284M7
alt_ctg16_1_3
CONTAINED
zC284M7
AL929040.12
finished
9 CH211-198O19
alt_ctg16_1_3
CONTAINER
zC198O19
AL845419.18
finished
  GAP (type-3) length unknown    
12 DKEY-11F7
alt_ctg16_1_4
CONTAINER
zK11F7
BX324207.8
finished
13 CH211-204A14
alt_ctg16_1_4
CONTAINED
zC204A14
AL954736.9
finished
12 DKEY-11F7
alt_ctg16_1_4
CONTAINER
zK11F7
BX324207.8
finished
  GAP (type-3) length unknown    
15 DKEY-11O1
alt_ctg16_1_5
CONTAINER
zK11O1
CR388405.11
finished
16 DKEY-228E22
alt_ctg16_1_5
CONTAINED
zK228E22
CR848785.8
finished
15 DKEY-11O1
alt_ctg16_1_5
CONTAINER
zK11O1
CR388405.11
finished
  GAP (type-3) length unknown    
18 DKEY-250K15
alt_ctg16_1_6
zK250K15
BX571826.20
finished
19 DKEY-81P7
alt_ctg16_1_6
zK81P7
BX005342.14
finished
20 DKEY-269D20
alt_ctg16_1_6
zK269D20
CR848719.17
finished
  GAP (type-3) length unknown    
22 CH73-296E2
alt_ctg16_1_7
zH296E2
CU467865.7
finished
23 CH211-69G19
alt_ctg16_1_7
zC69G19
AL929502.10
finished
24 DKEY-197A20
alt_ctg16_1_7
zK197A20
CT027619.10
finished
  GAP (type-3) length unknown    
26 DKEYP-69B9
alt_ctg16_1_8
zKp69B9
BX323458.7
finished
27 CH211-217M19
alt_ctg16_1_8
zC217M19
AL928695.23
finished
28 CH211-149K23
alt_ctg16_1_8
zC149K23
CU459065.8
finished
  GAP (type-3) length unknown    
30 CH211-32J10
alt_ctg16_1_9
zC32J10
CU459067.8
finished
31 CH211-54A4
alt_ctg16_1_9
zC54A4
CU179645.8
finished
32 CH73-382H2
alt_ctg16_1_9
zH382H2
FP102086.5
finished
  GAP (type-3) length unknown    
34 CH211-167H17
alt_ctg16_1_10
zC167H17
CR524827.17
finished
35 DKEY-73G17
alt_ctg16_1_10
zK73G17
CR848674.8
finished
36 CH73-79G6
alt_ctg16_1_10
zH79G6
FP067425.8
finished
  GAP (type-3) length unknown    
38 CH73-320A17
alt_ctg16_1_11
zH320A17
FP016055.7
finished
39 CH211-154O6
alt_ctg16_1_11
zC154O6
BX294670.6
finished
40 CH73-322B17
alt_ctg16_1_11
zH322B17
FP015862.5
finished
  GAP (type-3) length unknown    
42 DKEY-92I15
alt_ctg16_1_12
zK92I15
CR376750.10
finished
43 CH211-66F1
alt_ctg16_1_12
zC66F1
CR381547.15
finished
44 DKEY-238M4
alt_ctg16_1_12
zK238M4
BX927297.12
finished
  GAP (type-3) length unknown    
46 CH211-197I17
alt_ctg16_1_13
zC197I17
BX569792.15
finished
47 DKEY-166M7
alt_ctg16_1_13
zK166M7
BX088600.12
finished
48 CH211-251P5
alt_ctg16_1_13
zC251P5
CR626923.10
finished
  GAP (type-3) length unknown    
50 CH211-57K11
alt_ctg16_1_14
CONTAINER
zC57K11
BX511250.8
finished
51 DKEYP-19G6
alt_ctg16_1_14
CONTAINED
zKp19G6
CR853289.16
finished
50 CH211-57K11
alt_ctg16_1_14
CONTAINER
zC57K11
BX511250.8
finished
  GAP (type-3) length unknown    
53 CH211-209O12
alt_ctg16_1_15
zC209O12
CR533571.9
finished
54 CH211-201N18
alt_ctg16_1_15
zC201N18
BX247875.6
finished
55 DKEY-48A22
alt_ctg16_1_15
zK48A22
CR848729.10
finished
  GAP (type-3) length unknown    
57 DKEY-66C10
alt_ctg16_1_16
zK66C10
AL844887.10
finished
58 CH211-177P5
alt_ctg16_1_16
zC177P5
BX682233.6
finished
59 DKEY-15O4
alt_ctg16_1_16
zK15O4
AL954832.12
finished
  GAP (type-3) length unknown    
61 DKEY-34D22
alt_ctg16_1_17
zK34D22
CR936484.5
finished
62 CH211-154I8
alt_ctg16_1_17
zC154I8
CR339043.11
finished
  GAP (type-3) length unknown    
64 CH73-215D9
alt_ctg16_1_18
zH215D9
CU468287.6
finished
65 DKEY-88D9
alt_ctg16_1_18
zK88D9
CT485618.9
finished
66 CH211-208K15
alt_ctg16_1_18
CONTAINER
zC208K15
BX248115.12
finished
67 DKEY-193G10
alt_ctg16_1_18
CONTAINED
zK193G10
CT583721.6
finished
66 CH211-208K15
alt_ctg16_1_18
CONTAINER
zC208K15
BX248115.12
finished
  GAP (type-3) length unknown    
69 DKEYP-2D10
alt_ctg16_1_19
zKp2D10
BX294107.4
finished
70 CH211-214D1
alt_ctg16_1_19
zC214D1
AL954130.8
finished
71 CH211-198C19
alt_ctg16_1_19
zC198C19
BX088579.5
finished
  GAP (type-3) length unknown    
73 DKEY-23O4
alt_ctg16_1_20
CONTAINER
zK23O4
BX005412.17
finished
74 CH211-236E8
alt_ctg16_1_20
CONTAINED
zC236E8
BX248414.5
finished
73 DKEY-23O4
alt_ctg16_1_20
CONTAINER
zK23O4
BX005412.17
finished
  GAP (type-3) length unknown    
76 DKEY-77N11
alt_ctg16_1_21
zK77N11
AL929190.3
finished
77 DKEY-29L21
alt_ctg16_1_21
zK29L21
BX465860.7
finished
78 DKEY-152J12
alt_ctg16_1_21
zK152J12
BX294114.8
finished
79 CH73-275N5
alt_ctg16_1_21
zH275N5
CU855802.8
finished
  GAP (type-3) length unknown    
81 DKEY-199F5
alt_ctg16_1_22
CONTAINER
zK199F5
CR318611.4
finished
82 CH211-265P12
alt_ctg16_1_22
CONTAINED
zC265P12
AL954724.9
finished
81 DKEY-199F5
alt_ctg16_1_22
CONTAINER
zK199F5
CR318611.4
finished
  GAP (type-3) length unknown    
84 CH211-214L23
alt_ctg16_1_23
zC214L23
CT027645.24
finished
85 CH211-12C17
alt_ctg16_1_23
zC12C17
BX682531.11
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 55634 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR385082.11 93698 149331 -
55635 269206 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388060.19 15 213586 +
269207 294136 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX927222.8 1 24930 -
294137 344136 4 N 50000 contig no
344137 428467 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL935025.11 1 84331 +
428468 600788 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL844171.13 1 172321 +
600789 700426 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX470242.10 14512 114149 +
700427 750426 8 N 50000 contig no
750427 758458 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL845419.18 1 8032 +
758459 929784 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL929040.12 1 171326 -
929785 931570 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL845419.18 174594 176379 +
931571 981570 12 N 50000 contig no
981571 1008226 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX324207.8 1 26656 +
1008227 1162985 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL954736.9 5204 159962 -
1162986 1176104 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX324207.8 174034 187152 +
1176105 1226104 16 N 50000 contig no
1226105 1292557 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR388405.11 1 66453 +
1292558 1317517 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR848785.8 1 24960 +
1317518 1342379 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR388405.11 81296 106157 +
1342380 1392379 20 N 50000 contig no
1392380 1469410 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX571826.20 1 77031 +
1469411 1622517 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX005342.14 1116 154222 -
1622518 1655931 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR848719.17 97894 131307 +
1655932 1705931 24 N 50000 contig no
1705932 1718594 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CU467865.7 1 12663 +
1718595 1884208 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL929502.10 1 165614 -
1884209 1997589 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CT027619.10 68986 182366 +
1997590 2047589 28 N 50000 contig no
2047590 2159440 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 BX323458.7 82528 194378 -
2159441 2375318 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AL928695.23 1 215878 -
2375319 2520589 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CU459065.8 5665 150935 +
2520590 2570589 32 N 50000 contig no
2570590 2578593 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CU459067.8 1 8004 +
2578594 2702978 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CU179645.8 1 124385 -
2702979 2756896 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 FP102086.5 42801 96718 +
2756897 2806896 36 N 50000 contig no
2806897 2885152 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CR524827.17 50553 128808 -
2885153 3034804 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CR848674.8 1 149652 -
3034805 3045080 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 FP067425.8 1 10276 -
3045081 3095080 40 N 50000 contig no
3095081 3131647 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 FP016055.7 51337 87903 -
3131648 3330703 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX294670.6 15 199070 -
3330704 3340246 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 FP015862.5 1 9543 -
3340247 3390246 44 N 50000 contig no
3390247 3423937 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 CR376750.10 1 33691 +
3423938 3608183 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 CR381547.15 9015 193260 -
3608184 3735807 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 BX927297.12 4416 132039 +
3735808 3785807 48 N 50000 contig no
3785808 3850603 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 BX569792.15 169784 234579 -
3850604 4043237 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 BX088600.12 359 192992 -
4043238 4138900 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 CR626923.10 45884 141546 +
4138901 4188900 52 N 50000 contig no
4188901 4199032 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 BX511250.8 178950 189081 -
4199033 4361661 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 CR853289.16 1 162629 -
4361662 4370714 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 BX511250.8 1 9053 -
4370715 4420714 56 N 50000 contig no
4420715 4507683 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 CR533571.9 1 86969 +
4507684 4720713 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 BX247875.6 64 213093 +
4720714 4770922 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 CR848729.10 76415 126623 +
4770923 4820922 60 N 50000 contig no
4820923 4943053 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 AL844887.10 121740 243870 -
4943054 5088589 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX682233.6 1 145536 -
5088590 5257214 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 AL954832.12 1 168625 -
5257215 5307214 64 N 50000 contig no
5307215 5425347 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 66 CR936484.5 2001 120133 -
5425348 5598900 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 66 CR339043.11 1 173553 -
5598901 5648900 67 N 50000 contig no
5648901 5659460 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 72 CU468287.6 1 10560 +
5659461 5883637 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 72 CT485618.9 1 224177 -
5883638 5898395 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 72 BX248115.12 180620 195377 -
5898396 6061168 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 72 CT583721.6 1 162773 -
6061169 6073186 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 72 BX248115.12 1 12018 -
6073187 6123186 73 N 50000 contig no
6123187 6137486 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX294107.4 50842 65141 -
6137487 6372722 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 AL954130.8 1 235236 -
6372723 6377943 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX088579.5 1 5221 -
6377944 6427943 77 N 50000 contig no
6427944 6535207 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 BX005412.17 143699 250962 -
6535208 6684787 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 BX248414.5 1 149580 +
6684788 6706821 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 80 BX005412.17 1 22034 -
6706822 6756821 81 N 50000 contig no
6756822 6881089 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 85 AL929190.3 1 124268 +
6881090 7034990 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 85 BX465860.7 1 153901 +
7034991 7228641 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 85 BX294114.8 2001 195651 +
7228642 7287113 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 85 CU855802.8 17108 75579 +
7287114 7337113 86 N 50000 contig no
7337114 7362302 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 CR318611.4 1 25189 +
7362303 7499194 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 AL954724.9 1 136892 -
7499195 7506103 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 89 CR318611.4 155441 162349 +
7506104 7556103 90 N 50000 contig no
7556104 7628168 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 92 CT027645.24 41056 113120 -
7628169 7799281 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 92 BX682531.11 1 171113 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
22
Gap types
type-3
22
Total clones
63
Clone HTGS Phases
finished
63
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
3,483,098
Total finished length of fin clones w/ overlap
10,076,200
Total finished length of fin clones w/o overlap
6,593,102
Total overlap length of fin+unfin clones
3,483,098
Total finished length of fin+unfin clones w/ overlap
10,076,200
Total finished length of fin+unfin clones w/o overlap
6,593,102

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