ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_QBL (TPF updated: 2008-09-10)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DAQB-239N17
Hschr6_MHC_QBL_ctg1
bQB239N17
AL844539.5
finished
2 DAQB-5M14
Hschr6_MHC_QBL_ctg1
bQB5M14
BX000360.7
finished
3 DAQB-73K12
Hschr6_MHC_QBL_ctg1
bQB73K12
BX537153.6
finished
4 DAQB-314F7
Hschr6_MHC_QBL_ctg1
bQB314F7
AL954865.13
finished
5 DAQB-117O11
Hschr6_MHC_QBL_ctg1
bQB117O11
AL929561.5
finished
6 DAQB-153A4
Hschr6_MHC_QBL_ctg1
bQB153A4
AL935156.4
finished
7 DAQB-169K4
Hschr6_MHC_QBL_ctg1
bQB169K4
AL929573.13
finished
  GAP (type-2) length 159310 bps    
9 DAQB-283L15
Hschr6_MHC_QBL_ctg1
bQB283L15
BX296534.5
finished
10 DAQB-304F3
Hschr6_MHC_QBL_ctg1
bQB304F3
BX004810.8
finished
11 DAQB-12N14
Hschr6_MHC_QBL_ctg1
bQB12N14
BX000531.11
finished
12 DAQB-36F16
Hschr6_MHC_QBL_ctg1
bQB36F16
BX000688.11
finished
13 DAQB-92E24
Hschr6_MHC_QBL_ctg1
bQB92E24
AL929591.8
finished
14 DAQB-335A13
Hschr6_MHC_QBL_ctg1
bQB335A13
AL844851.4
finished
15 DAQB-346J13
Hschr6_MHC_QBL_ctg1
bQB346J13
BX001005.6
finished
16 DAQB-90C11
Hschr6_MHC_QBL_ctg1
bQB90C11
AL845454.6
finished
17 DAQB-215D11
Hschr6_MHC_QBL_ctg1
bQB215D11
AL845439.5
finished
18 DAQB-112K1
Hschr6_MHC_QBL_ctg1
bQB112K1
BX322644.8
finished
19 DAQB-44E15
Hschr6_MHC_QBL_ctg1
bQB44E15
AL844220.3
finished
20 DAQB-256M13
Hschr6_MHC_QBL_ctg1
bQB256M13
AL845452.3
finished
21 DAQB-170I5
Hschr6_MHC_QBL_ctg1
bQB170I5
AL773535.8
finished
22 DAQB-39G10
Hschr6_MHC_QBL_ctg1
bQB39G10
AL844203.3
finished
23 DAQB-352F19
Hschr6_MHC_QBL_ctg1
bQB352F19
AL844213.2
finished
24 DAQB-256B5
Hschr6_MHC_QBL_ctg1
bQB256B5
BX000357.7
finished
25 DAQB-298I5
Hschr6_MHC_QBL_ctg1
bQB298I5
BX248507.3
finished
26 DAQB-47P19
Hschr6_MHC_QBL_ctg1
bQB47P19
AL845353.7
finished
27 DAQB-230F21
Hschr6_MHC_QBL_ctg1
bQB230F21
AL773551.4
finished
28 DAQB-10J12
Hschr6_MHC_QBL_ctg1
bQB10J12
AL805917.3
finished
29 DAQB-196C18
Hschr6_MHC_QBL_ctg1
bQB196C18
AL773589.3
finished
30 DAQB-11J22
Hschr6_MHC_QBL_ctg1
bQB11J22
AL773541.6
finished
31 DAQB-218D23
Hschr6_MHC_QBL_ctg1
bQB218D23
AL805909.5
finished
32 DAQB-185I1
Hschr6_MHC_QBL_ctg1
bQB185I1
AL773544.5
finished
33 DAQB-5G13
Hschr6_MHC_QBL_ctg1
bQB5G13
AL845458.9
finished
34 DAQB-115I13
Hschr6_MHC_QBL_ctg1
bQB115I13
BX322539.9
finished
35 DAQB-48K1
Hschr6_MHC_QBL_ctg1
bQB48K1
AL845443.3
finished
  GAP (type-2) length 51150 bps    
37 DAQB-72H16
Hschr6_MHC_QBL_ctg1
bQB72H16
BX001040.14
finished
38 DAQB-87N14
Hschr6_MHC_QBL_ctg1
bQB87N14
AL929587.5
finished
39 DAQB-195H10
Hschr6_MHC_QBL_ctg1
bQB195H10
AL805934.3
finished
40 DAQB-350E15
Hschr6_MHC_QBL_ctg1
bQB350E15
AL844216.3
finished
  GAP (type-2) length 26431 bps    
42 DAQB-147D11
Hschr6_MHC_QBL_ctg1
bQB147D11
AL929592.8
finished
43 DAQB-331I12
Hschr6_MHC_QBL_ctg1
bQB331I12
AL844853.23
finished
44 DAQB-124C11
Hschr6_MHC_QBL_ctg1
bQB124C11
AL929593.6
finished
  GAP (type-2) length 52793 bps    
46 DAQB-143M3
Hschr6_MHC_QBL_ctg1
bQB143M3
AL845464.5
finished
47 DAQB-282H15
Hschr6_MHC_QBL_ctg1
bQB282H15
AL845509.6
finished
48 DAQB-309N16
Hschr6_MHC_QBL_ctg1
bQB309N16
BX001039.5
finished
49 DAQB-184K4
Hschr6_MHC_QBL_ctg1
bQB184K4
AL935032.13
finished
50 DAQB-97F8
Hschr6_MHC_QBL_ctg1
bQB97F8
AL929581.5
finished
51 BQB97F8_109B10_3
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_3
CR854861.1
finished
52 BQB97F8_109B10_2
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_2
CR854860.1
finished
53 BQB97F8_109B10_1
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_1
CR854859.1
finished
54 DAQB-109B10
Hschr6_MHC_QBL_ctg1
bQB109B10
AL935026.4
finished
55 DAQB-187P15
Hschr6_MHC_QBL_ctg1
bQB187P15
AL773543.3
finished
  GAP (type-2) length 26975 bps    
57 DAQB-69D7
Hschr6_MHC_QBL_ctg1
bQB69D7
AL935043.4
finished
58 DAQB-96B10
Hschr6_MHC_QBL_ctg1
bQB96B10
AL935042.6
finished
59 DAQB-22D21
Hschr6_MHC_QBL_ctg1
bQB22D21
AL805913.4
finished
60 DAQB-79P13
Hschr6_MHC_QBL_ctg1
bQB79P13
AL845446.7
finished
61 DAQB-314F24
Hschr6_MHC_QBL_ctg1
bQB314F24
AL844527.6
finished
62 DAQB-193B15
Hschr6_MHC_QBL_ctg1
bQB193B15
BX000343.5
finished
63 DAQB-126H3
Hschr6_MHC_QBL_ctg1
bQB126H3
BX248088.18
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 98145 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 AL844539.5 1 98145 +
98146 140546 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 BX000360.7 2001 44401 +
140547 151079 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 BX537153.6 2001 12533 +
151080 190205 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 AL954865.13 2002 41127 +
190206 369316 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 AL929561.5 2001 181111 +
369317 462676 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 AL935156.4 2001 95360 +
462677 475847 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 AL929573.13 2001 15171 +
475848 635157 8 N 159310 contig yes
635158 641650 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX296534.5 1 6493 +
641651 672223 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX004810.8 2001 32573 +
672224 759362 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX000531.11 2001 89139 +
759363 860046 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX000688.11 2001 102684 +
860047 919289 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL929591.8 2001 61243 +
919290 1036319 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL844851.4 2001 119030 +
1036320 1084493 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX001005.6 2001 50174 +
1084494 1241920 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845454.6 2001 159427 +
1241921 1314684 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845439.5 2001 74764 +
1314685 1365612 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX322644.8 2001 52928 +
1365613 1515910 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL844220.3 2001 152298 +
1515911 1521480 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845452.3 2001 7570 +
1521481 1607554 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL773535.8 2001 88074 +
1607555 1655479 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL844203.3 2001 49925 +
1655480 1751109 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL844213.2 2001 97630 +
1751110 1813281 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX000357.7 2001 64172 +
1813282 1833423 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX248507.3 2001 22142 +
1833424 1962178 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845353.7 2001 130755 +
1962179 2036403 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL773551.4 2001 76225 +
2036404 2099776 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL805917.3 2001 65373 +
2099777 2112153 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL773589.3 2792 15168 +
2112154 2213933 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL773541.6 2001 103780 +
2213934 2297734 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL805909.5 2001 85801 +
2297735 2409122 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL773544.5 2001 113388 +
2409123 2421290 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845458.9 2001 14168 +
2421291 2488785 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 BX322539.9 2001 69495 +
2488786 2634861 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 35 AL845443.3 2001 148076 +
2634862 2686011 36 N 51150 contig yes
2686012 2769531 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 BX001040.14 1 83520 +
2769532 2828889 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 AL929587.5 2001 61358 +
2828890 2925998 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 AL805934.3 2001 99109 +
2925999 2977123 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 AL844216.3 2001 53125 +
2977124 3003554 41 N 26431 contig yes
3003555 3063390 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AL929592.8 1 59836 +
3063391 3214854 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AL844853.23 2001 153464 +
3214855 3270193 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AL929593.6 2001 57339 +
3270194 3322986 45 N 52793 contig yes
3322987 3379733 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL845464.5 1 56747 +
3379734 3504137 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL845509.6 2001 126404 +
3504138 3560565 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 BX001039.5 2001 58428 +
3560566 3653828 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL935032.13 2001 95263 +
3653829 3770599 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL929581.5 2001 118771 +
3770600 3778895 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 CR854861.1 101 8396 +
3778896 3785727 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 CR854860.1 101 6932 +
3785728 3792596 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 CR854859.1 101 6969 +
3792597 3831675 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL935026.4 101 39179 +
3831676 3946978 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 55 AL773543.3 2001 117303 +
3946979 3973953 56 N 26975 contig yes
3973954 4037132 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 AL935043.4 1 63179 +
4037133 4130920 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 AL935042.6 2001 95788 +
4130921 4235648 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 AL805913.4 2001 106728 +
4235649 4327490 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 AL845446.7 2001 93842 +
4327491 4435013 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 AL844527.6 2001 109523 +
4435014 4453356 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 BX000343.5 2001 20343 +
4453357 4565931 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 63 BX248088.18 2001 114575 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
5
Gap types
type-2
5
Total clones
58
Clone HTGS Phases
finished
58
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
97,192
Total finished length of fin clones w/ overlap
4,346,464
Total finished length of fin clones w/o overlap
4,249,272
Total overlap length of fin+unfin clones
97,192
Total finished length of fin+unfin clones w/ overlap
4,346,464
Total finished length of fin+unfin clones w/o overlap
4,249,272

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Other links

* quick link - http://q.sanger.ac.uk/0almh7yb