ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__15 (TPF updated: 2015-03-20)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CTD-2022H16
HSCHR15_6_CTG8
bK2022H16
AC111152.2
finished
2 288P15
HSCHR15_6_CTG8
288P15
AC254979.1
contiguous
3 459P16
HSCHR15_6_CTG8
459P16
AC254962.1
finished
4 43L12
HSCHR15_6_CTG8
43L12
AC254958.1
finished
5 89G14
HSCHR15_6_CTG8
89G14
AC254952.1
finished
6 364D19
HSCHR15_6_CTG8
364D19
AC254957.1
finished
  GAP (type-2) length 1339926 bps    
8 362L5
HSCHR15_6_CTG8
362L5
AC254944.1
contiguous
9 439M17
HSCHR15_6_CTG8
439M17
AC254960.1
finished
10 89D21
HSCHR15_6_CTG8
89D21
AC254945.1
finished
11 RP11-758N13
HSCHR15_6_CTG8
bA758N13
AC090877.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 24102 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC111152.2 1 24102 +
24103 128335 2 A AC254979.1 1 104233 +
128336 253193 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254962.1 1 124858 -
253194 360659 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254958.1 1 107466 -
360660 470048 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254952.1 1 109389 -
470049 540670 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254957.1 1 70622 -
540671 1880596 7 N 1339926 contig yes # ALIGN GENUS
1880597 1943907 8 A AC254944.1 102435 165745 -
1943908 2073748 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC254960.1 76 129916 +
2073749 2234893 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC254945.1 9488 170632 +
2234894 2376950 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC090877.4 39404 181460 +

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-2022H16
HSCHR15_6_CTG8
bK2022H16
-
-
AC111152.2
finished
80119 CIT-HSP-D1 3' / 5'
24102 / 1
- / -
56004
0.12
Identified
2016-02-24
agp2oracle
humpub
 
2 288P15
HSCHR15_6_CTG8
288P15
-
-
AC254979.1
contiguous
171927 - 3' / 3'
104233 / 124858
- / -
67583
15.78
Identified
2016-02-24
agp2oracle
humpub
 
3 459P16
HSCHR15_6_CTG8
459P16
-
-
AC254962.1
finished
124858 - 5' / 3'
1 / 107466
- / -
53123
0.02
Identified
2016-02-24
agp2oracle
humpub
 
4 43L12
HSCHR15_6_CTG8
43L12
-
-
AC254958.1
finished
160589 - 5' / 3'
1 / 109389
- / -
73156
0
Identified
2016-02-24
agp2oracle
humpub
 
5 89G14
HSCHR15_6_CTG8
89G14
-
-
AC254952.1
finished
182546 - 5' / 3'
1 / 70622
- / -
101916
0
Identified
2016-02-24
agp2oracle
humpub
 
6 364D19
HSCHR15_6_CTG8
364D19
-
-
AC254957.1
finished
172542 -        
  GAP (type-2) length 1339926 bps                  
8 362L5
HSCHR15_6_CTG8
362L5
-
-
AC254944.1
contiguous
165745 - 5' / 5'
102435 / 76
- / 75
102415
0.08
Identified
2016-02-24
agp2oracle
humpub
 
9 439M17
HSCHR15_6_CTG8
439M17
-
-
AC254960.1
finished
129916 - 3' / 5'
129916 / 9488
- / -
9487
0
Identified
2016-02-24
agp2oracle
humpub
 
10 89D21
HSCHR15_6_CTG8
89D21
-
-
AC254945.1
finished
170632 - 3' / 5'
170632 / 39404
- / -
39394
0.19
Identified
2016-02-24
agp2oracle
humpub
 
11 RP11-758N13
HSCHR15_6_CTG8
bA758N13
-
-
AC090877.4
finished
181460 RPCI-11.3        

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
10
Clone HTGS Phases
contiguous
2
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
277,076
Total finished length of fin clones w/ overlap
1,202,662
Total finished length of fin clones w/o overlap
925,586
Total overlap length of fin+unfin clones
503,091
Total finished length of fin+unfin clones w/ overlap
1,540,334
Total finished length of fin+unfin clones w/o overlap
1,037,243

Dovetails

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# rank accession status length date
1 9 AC254960 unfinished 75 Mon, 15 Jan 2018 23:17

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