ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__15 (TPF updated: 2015-03-20)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CTD-2022H16
HSCHR15_6_CTG8
bK2022H16
AC111152.2
finished
2 288P15
HSCHR15_6_CTG8
288P15
AC254979.1
contiguous
3 459P16
HSCHR15_6_CTG8
459P16
AC254962.1
finished
4 43L12
HSCHR15_6_CTG8
43L12
AC254958.1
finished
5 89G14
HSCHR15_6_CTG8
89G14
AC254952.1
finished
6 364D19
HSCHR15_6_CTG8
364D19
AC254957.1
finished
  GAP (type-2) length 1339926 bps    
8 362L5
HSCHR15_6_CTG8
362L5
AC254944.1
contiguous
9 439M17
HSCHR15_6_CTG8
439M17
AC254960.1
finished
10 89D21
HSCHR15_6_CTG8
89D21
AC254945.1
finished
11 RP11-758N13
HSCHR15_6_CTG8
bA758N13
AC090877.4
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 24102 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC111152.2 1 24102 +
24103 128335 2 A AC254979.1 1 104233 +
128336 253193 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254962.1 1 124858 -
253194 360659 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254958.1 1 107466 -
360660 470048 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254952.1 1 109389 -
470049 540670 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC254957.1 1 70622 -
540671 1880596 7 N 1339926 contig yes # ALIGN GENUS
1880597 1943907 8 A AC254944.1 102435 165745 -
1943908 2073748 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC254960.1 76 129916 +
2073749 2234893 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC254945.1 9488 170632 +
2234894 2376950 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC090877.4 39404 181460 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
10
Clone HTGS Phases
contiguous
2
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
277,076
Total finished length of fin clones w/ overlap
1,202,662
Total finished length of fin clones w/o overlap
925,586
Total overlap length of fin+unfin clones
503,091
Total finished length of fin+unfin clones w/ overlap
1,540,334
Total finished length of fin+unfin clones w/o overlap
1,037,243

Dovetails

Help

# rank accession status length date
1 9 AC254960 unfinished 75 Mon, 18 Sep 2017 23:16

Search

Search Project, Accession or International clone name:

Select region

Other links

Short-link