ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_16 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-261D10
Hschr16_random_ctg1
bA261D10
AC133551.3
finished
  GAP (type-2) length unknown    
3 RP11-408D2
Hschr16_random_ctg1
bA408D2
AC009091.9
finished
  GAP (type-2) length unknown    
5 RP11-22F7
Hschr16_random_ctg1
bA22F7
AC138511.2
finished
  GAP (type-2) length unknown    
7 RP11-554I17
Hschr16_random_ctg1
bA554I17
AC136625.2
finished
  GAP (type-2) length unknown    
9 RP11-319D11
Hschr16_random_ctg1
bA319D11
AC136612.2
finished
10 RP11-499D5
Hschr16_random_ctg1
bA499D5
AC007908.4
finished
11 RP11-44A7
Hschr16_random_ctg1
bA44A7
AC136616.4
finished
12 RP11-1415K9
Hschr16_random_ctg1
bA1415K9
AC141272.3
finished
  GAP (type-2) length unknown    
14 RP11-1217H2
Hschr16_random_ctg1
bA1217H2
AC145615.3
finished
  GAP (type-2) length unknown    
16 RP11-413O9
Hschr16_random_ctg1
bA413O9
AC133920.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 40861 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC133551.3 1 40861 +
40862 90861 2 N 50000 contig yes
90862 247134 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC009091.9 1 156273 +
247135 297134 4 N 50000 contig yes
297135 446171 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC138511.2 1 149037 +
446172 496171 6 N 50000 contig yes
496172 680465 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC136625.2 1 184294 +
680466 730465 8 N 50000 contig yes
730466 952087 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 AC136612.2 1 221622 -
952088 1116488 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 AC007908.4 1 164401 -
1116489 1255924 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 AC136616.4 35042 174477 +
1255925 1367513 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 AC141272.3 1 111589 -
1367514 1417513 13 N 50000 contig yes
1417514 1625402 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AC145615.3 1 207889 +
1625403 1675402 15 N 50000 contig yes
1675403 1872759 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AC133920.2 1 197357 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-261D10
Hschr16_random_ctg1
bA261D10
-
-
AC133551.3
finished
40861 RPCI-11.1        
  GAP (type-2) length unknown                  
3 RP11-408D2
Hschr16_random_ctg1
bA408D2
-
-
AC009091.9
finished
156273 RPCI-11.2        
  GAP (type-2) length unknown                  
5 RP11-22F7
Hschr16_random_ctg1
bA22F7
-
-
AC138511.2
finished
149037 RPCI-11.1        
  GAP (type-2) length unknown                  
7 RP11-554I17
Hschr16_random_ctg1
bA554I17
-
-
AC136625.2
finished
184294 RPCI-11.2        
  GAP (type-2) length unknown                  
9 RP11-319D11
Hschr16_random_ctg1
bA319D11
-
-
AC136612.2
finished
221622 RPCI-11.2 5' / 3'
1 / 164401
- / -
49709
0
Identified
2014-04-09
agp2oracle
humpub
 
10 RP11-499D5
Hschr16_random_ctg1
bA499D5
-
-
AC007908.4
finished
214110 RPCI-11.2 5' / 5'
1 / 35042
- / -
35041
0
Identified
2014-04-09
agp2oracle
humpub
 
11 RP11-44A7
Hschr16_random_ctg1
bA44A7
-
-
AC136616.4
finished
174477 RPCI-11.1 3' / 3'
174477 / 111589
- / -
73598
0
Identified
2014-04-09
agp2oracle
humpub
 
12 RP11-1415K9
Hschr16_random_ctg1
bA1415K9
-
-
AC141272.3
finished
185187 RPCI-11.5        
  GAP (type-2) length unknown                  
14 RP11-1217H2
Hschr16_random_ctg1
bA1217H2
-
-
AC145615.3
finished
207889 RPCI-11.5        
  GAP (type-2) length unknown                  
16 RP11-413O9
Hschr16_random_ctg1
bA413O9
-
-
AC133920.2
finished
197357 RPCI-11.2        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-2
6
Total clones
10
Clone HTGS Phases
finished
10
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
158,348
Total finished length of fin clones w/ overlap
1,731,107
Total finished length of fin clones w/o overlap
1,572,759
Total overlap length of fin+unfin clones
158,348
Total finished length of fin+unfin clones w/ overlap
1,731,107
Total finished length of fin+unfin clones w/o overlap
1,572,759

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Other links

* quick link - http://q.sanger.ac.uk/i23tj842