ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__1 (TPF updated: 2016-07-02)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-407H12
Hschr1_alt2_1_ctg32_1
CONTAINER
bA407H12
AC138089.2
finished
2 ABC14-50150300K14
Hschr1_alt2_1_ctg32_1
CONTAINED
f14A50150300K14
AC231953.3
finished
1 RP11-407H12
Hschr1_alt2_1_ctg32_1
CONTAINER
bA407H12
AC138089.2
finished
  GAP (type-3) length unknown    
4 CH17-409J4
HSCHR1_5_CTG3
bMO409J4
AC245056.3
finished
5 WI2-3308P17
HSCHR1_5_CTG3
fW3308P17
CR589905.6
finished
6 CH17-223I5
HSCHR1_5_CTG3
bMO223I5
AC244216.2
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 43431 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138089.2 1 43431 +
43432 75589 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC231953.3 1 32158 +
75590 177432 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138089.2 73145 174987 +
177433 227432 4 N 50000 contig no
227433 401907 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC245056.3 18133 192607 -
401908 438890 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR589905.6 1 36983 -
438891 506091 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC244216.2 1 67201 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
75,420
Total finished length of fin clones w/ overlap
661,009
Total finished length of fin clones w/o overlap
585,589
Total overlap length of fin+unfin clones
75,420
Total finished length of fin+unfin clones w/ overlap
661,009
Total finished length of fin+unfin clones w/o overlap
585,589

Dovetails

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# rank accession status length date
1 1 AC138089 unfinished 101,843 Fri, 01 Jul 2016 23:00
2 4 AC245056 unfinished 5,944 Fri, 01 Jul 2016 23:00
3 6 AC244216 unfinished 90,330 Fri, 01 Jul 2016 23:00

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