ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__15 (TPF updated: 2014-10-25)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-268O3
HSCHR15_4_CTG8
bA268O3
AC079090.4
finished
2 CH17-248C21
HSCHR15_4_CTG8
bMO248C21
AC243653.3
finished
3
HSCHR15_4_CTG8
AMYH02030122
AMYH02030122.1
finished
4 CH17-220P3
HSCHR15_4_CTG8
bMO220P3
AC243660.3
finished
5 CH17-184J24
HSCHR15_4_CTG8
bMO184J24
AC243913.2
finished
6 CH17-71L23
HSCHR15_4_CTG8
bMO71L23
AC243951.3
finished
7 CH17-169A12
HSCHR15_4_CTG8
bMO169A12
AC243657.2
finished
8
HSCHR15_4_CTG8
AMYH02030123
AMYH02030123.1
finished
  GAP (type-2) length 3433 bps    
10 CH17-215I18
HSCHR15_4_CTG8
bMO215I18
AC243901.3
finished
11 CH17-5C18
HSCHR15_4_CTG8
bMO5C18
AC243902.3
finished
12 CH17-245F8
HSCHR15_4_CTG8
bMO245F8
AC243686.3
finished
13 CH17-248A6
HSCHR15_4_CTG8
bMO248A6
AC243652.4
finished
14 CH17-141A19
HSCHR15_4_CTG8
bMO141A19
AC243587.3
finished
15 CH17-465I15
HSCHR15_4_CTG8
bMO465I15
AC244165.2
finished
16 CH17-455O19
HSCHR15_4_CTG8
bMO455O19
AC243949.2
finished
17 CH17-339B3
HSCHR15_4_CTG8
bMO339B3
AC243790.3
finished
18 CH17-267D1
HSCHR15_4_CTG8
bMO267D1
AC243679.3
finished
19 CH17-426F4
HSCHR15_4_CTG8
bMO426F4
AC247157.4
finished
20 CH17-250J22
HSCHR15_4_CTG8
bMO250J22
AC243687.3
finished
21 CH17-6K7
HSCHR15_4_CTG8
bMO6K7
AC244012.2
finished
22 CH17-404C3
HSCHR15_4_CTG8
bMO404C3
AC243758.2
finished
23 CH17-10D14
HSCHR15_4_CTG8
bMO10D14
AC243586.3
finished
24 CH17-151A19
HSCHR15_4_CTG8
bMO151A19
AC243650.3
finished
25 CH17-287M11
HSCHR15_4_CTG8
bMO287M11
AC243688.3
finished
26 CH17-406C17
HSCHR15_4_CTG8
bMO406C17
AC243759.3
finished
27 CH17-245I8
HSCHR15_4_CTG8
bMO245I8
AC243649.4
finished
28 CH17-331I9
HSCHR15_4_CTG8
bMO331I9
AC243734.3
finished
29 CH17-50J22
HSCHR15_4_CTG8
bMO50J22
AC243827.3
finished
30 CH17-311D18
HSCHR15_4_CTG8
bMO311D18
AC253577.2
finished
  GAP (type-2) length 33558 bps    
32 CH17-280K8
HSCHR15_4_CTG8
bMO280K8
AC243655.3
finished
33 CH17-325P22
HSCHR15_4_CTG8
bMO325P22
AC243948.1
finished
34 RP11-88O16
HSCHR15_4_CTG8
bA88O16
AC090982.4
finished
  GAP (type-3) length unknown    
36 ABC13-945422C12
HSCHR15_2_CTG3
f13A945422C12
AC225825.3
finished
37 RP11-467N20
HSCHR15_2_CTG3
bA467N20
AC116165.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 158510 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC079090.4 1 158510 -
158511 385255 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC243653.3 1 226745 -
385256 432291 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AMYH02030122.1 262715 309750 +
432292 629545 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC243660.3 1 197254 -
629546 836041 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC243913.2 1 206496 -
836042 940921 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC243951.3 1 104880 -
940922 1025678 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AC243657.2 122707 207463 +
1025679 1135547 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AMYH02030123.1 78561 188429 +
1135548 1138980 9 N 3433 contig yes # ALIGN GENUS
1138981 1351723 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243901.3 1 212743 -
1351724 1532502 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243902.3 1 180779 -
1532503 1714136 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243686.3 34966 216599 +
1714137 1873970 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243652.4 45976 205809 +
1873971 2041194 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243587.3 50260 217483 +
2041195 2225961 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC244165.2 21501 206267 +
2225962 2361071 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243949.2 1 135110 -
2361072 2510393 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243790.3 1 149322 -
2510394 2702489 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243679.3 1 192096 -
2702490 2757824 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC247157.4 168160 223494 +
2757825 2949743 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243687.3 27929 219847 +
2949744 3091032 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC244012.2 1 141289 -
3091033 3295517 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243758.2 1 204485 -
3295518 3485961 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243586.3 1 190444 -
3485962 3640826 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243650.3 84236 239100 +
3640827 3844409 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243688.3 1 203583 -
3844410 4023625 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243759.3 14039 193254 +
4023626 4176028 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243649.4 1 152403 -
4176029 4343382 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243734.3 1 167354 -
4343383 4540723 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC243827.3 1 197341 -
4540724 4560975 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 30 AC253577.2 1 20252 -
4560976 4594533 31 N 33558 contig yes # ALIGN GENUS
4594534 4805793 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC243655.3 1 211260 +
4805794 4988803 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC243948.1 1 183010 -
4988804 5058231 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC090982.4 1 69428 -
5058232 5108231 35 N 50000 contig no
5108232 5146477 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 AC225825.3 1 38246 -
5146478 5304615 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 AC116165.8 1 158138 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-268O3
HSCHR15_4_CTG8
bA268O3
-
-
AC079090.4
finished
158510 RPCI-11.1 5' / 3'
1 / 226745
- / -
6
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
2 CH17-248C21
HSCHR15_4_CTG8
bMO248C21
-
-
AC243653.3
finished
226751 CHORI-17 5' / 5'
1 / 262715
- / 35137
226697
0.42
Identified
2014-10-25
agp2oracle
humpub
Certificate approved
3
HSCHR15_4_CTG8
AMYH02030122
-
-
AMYH02030122.1
finished
421754 - 3' / 3'
309750 / 197254
4 / -
111712
0.51
Identified
2014-10-25
agp2oracle
humpub
 
4 CH17-220P3
HSCHR15_4_CTG8
bMO220P3
-
-
AC243660.3
finished
197254 CHORI-17 5' / 3'
1 / 206496
- / -
4079
0.05
Identified
2014-10-25
fetch_ncbi...
humpub
 
5 CH17-184J24
HSCHR15_4_CTG8
bMO184J24
-
-
AC243913.2
finished
210575 CHORI-17 5' / 3'
1 / 104880
- / -
103048
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
6 CH17-71L23
HSCHR15_4_CTG8
bMO71L23
-
-
AC243951.3
finished
207928 CHORI-17 5' / 5'
1 / 122707
- / -
122706
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
7 CH17-169A12
HSCHR15_4_CTG8
bMO169A12
-
-
AC243657.2
finished
207463 CHORI-17 3' / 5'
207463 / 78561
- / -
78526
0.04
Identified
2014-10-25
agp2oracle
humpub
 
8
HSCHR15_4_CTG8
AMYH02030123
-
-
AMYH02030123.1
finished
188429 -        
  GAP (type-2) length 3433 bps                  
10 CH17-215I18
HSCHR15_4_CTG8
bMO215I18
-
-
AC243901.3
finished
212743 CHORI-17 5' / 3'
1 / 180779
- / -
60515
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
11 CH17-5C18
HSCHR15_4_CTG8
bMO5C18
-
-
AC243902.3
finished
241294 CHORI-17 5' / 5'
1 / 34966
- / -
34962
0.72
Identified
2014-10-25
fetch_ncbi...
humpub
Certificate approved
12 CH17-245F8
HSCHR15_4_CTG8
bMO245F8
-
-
AC243686.3
finished
216599 CHORI-17 3' / 5'
216599 / 45976
- / -
45975
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
13 CH17-248A6
HSCHR15_4_CTG8
bMO248A6
-
-
AC243652.4
finished
205809 CHORI-17 3' / 5'
205809 / 50260
- / -
50259
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
14 CH17-141A19
HSCHR15_4_CTG8
bMO141A19
-
-
AC243587.3
finished
217483 CHORI-17 3' / 5'
217483 / 21501
- / -
21500
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
15 CH17-465I15
HSCHR15_4_CTG8
bMO465I15
-
-
AC244165.2
finished
206267 CHORI-17 3' / 3'
206267 / 135110
- / -
61694
2.8
Identified
2014-10-25
fetch_ncbi...
humpub
Certificate approved
16 CH17-455O19
HSCHR15_4_CTG8
bMO455O19
-
-
AC243949.2
finished
196830 CHORI-17 5' / 3'
1 / 149322
- / -
56244
0.02
Identified
2014-10-25
fetch_ncbi...
humpub
 
17 CH17-339B3
HSCHR15_4_CTG8
bMO339B3
-
-
AC243790.3
finished
205570 CHORI-17 5' / 3'
1 / 192096
- / -
29815
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
18 CH17-267D1
HSCHR15_4_CTG8
bMO267D1
-
-
AC243679.3
finished
221911 CHORI-17 5' / 5'
1 / 168160
- / -
168158
0.01
Identified
2014-10-25
agp2oracle
humpub
 
19 CH17-426F4
HSCHR15_4_CTG8
bMO426F4
-
-
AC247157.4
finished
223494 CHORI-17 3' / 5'
223494 / 27929
- / -
27928
0
Identified
2014-10-25
agp2oracle
humpub
 
20 CH17-250J22
HSCHR15_4_CTG8
bMO250J22
-
-
AC243687.3
finished
219847 CHORI-17 3' / 3'
219847 / 141289
- / -
55699
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
21 CH17-6K7
HSCHR15_4_CTG8
bMO6K7
-
-
AC244012.2
finished
196989 CHORI-17 5' / 3'
1 / 204485
- / -
3953
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
22 CH17-404C3
HSCHR15_4_CTG8
bMO404C3
-
-
AC243758.2
finished
208438 CHORI-17 5' / 3'
1 / 190444
- / -
30782
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
23 CH17-10D14
HSCHR15_4_CTG8
bMO10D14
-
-
AC243586.3
finished
221226 CHORI-17 5' / 5'
1 / 84236
- / -
84235
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
24 CH17-151A19
HSCHR15_4_CTG8
bMO151A19
-
-
AC243650.3
finished
239100 CHORI-17 3' / 3'
239100 / 203583
- / -
27760
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
25 CH17-287M11
HSCHR15_4_CTG8
bMO287M11
-
-
AC243688.3
finished
231344 CHORI-17 5' / 5'
1 / 14039
- / -
14038
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
26 CH17-406C17
HSCHR15_4_CTG8
bMO406C17
-
-
AC243759.3
finished
193254 CHORI-17 3' / 3'
193254 / 152403
- / -
69763
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
27 CH17-245I8
HSCHR15_4_CTG8
bMO245I8
-
-
AC243649.4
finished
222166 CHORI-17 5' / 3'
1 / 167354
- / -
42520
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
28 CH17-331I9
HSCHR15_4_CTG8
bMO331I9
-
-
AC243734.3
finished
209874 CHORI-17 5' / 3'
1 / 197341
- / -
21619
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
29 CH17-50J22
HSCHR15_4_CTG8
bMO50J22
-
-
AC243827.3
finished
218960 CHORI-17 5' / 3'
1 / 20252
- / -
173346
0
Identified
2014-10-25
agp2oracle
humpub
 
30 CH17-311D18
HSCHR15_4_CTG8
bMO311D18
-
-
AC253577.2
finished
193601 CHORI-17        
  GAP (type-2) length 33558 bps                  
32 CH17-280K8
HSCHR15_4_CTG8
bMO280K8
-
-
AC243655.3
finished
211260 CHORI-17 3' / 3'
211260 / 183010
- / -
29495
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
33 CH17-325P22
HSCHR15_4_CTG8
bMO325P22
-
-
AC243948.1
finished
212505 CHORI-17 5' / 3'
1 / 69428
- / -
125996
0.35
Identified
2014-10-25
fetch_ncbi...
humpub
 
34 RP11-88O16
HSCHR15_4_CTG8
bA88O16
-
-
AC090982.4
finished
195549 RPCI-11.1        
  GAP (type-3) length unknown                  
36 ABC13-945422C12
HSCHR15_2_CTG3
f13A945422C12
-
-
AC225825.3
finished
38246 ABC13 5' / 3'
1 / 158138
- / 62
22182
1.33
Identified
2014-10-25
fetch_ncbi...
humpub
Certificate submitted, not yet approved
37 RP11-467N20
HSCHR15_2_CTG3
bA467N20
-
-
AC116165.8
finished
180405 RPCI-11.2        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
2
type-3
1
Total clones
34
Clone HTGS Phases
finished
34
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,905,212
Total finished length of fin clones w/ overlap
7,159,428
Total finished length of fin clones w/o overlap
5,254,216
Total overlap length of fin+unfin clones
1,905,212
Total finished length of fin+unfin clones w/ overlap
7,159,428
Total finished length of fin+unfin clones w/o overlap
5,254,216

Dovetails

# rank accession status length date
1 3 AMYH02030122.1 unfinished 35,137 Sat, 25 Oct 2014 23:19
2 3 AMYH02030122.1 unfinished 4 Sat, 25 Oct 2014 23:19
3 37 AC116165.8 unfinished 62 Sat, 25 Oct 2014 23:19

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Other links

* quick link - http://q.sanger.ac.uk/p7w6rbec