ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__15 (TPF updated: 2014-04-25)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-268O3
HSCHR15_4_CTG8
bA268O3
AC079090.4
finished
2 CH17-248C21
HSCHR15_4_CTG8
bMO248C21
AC243653.3
finished
  GAP (type-2) length 160822 bps    
4 CH17-220P3
HSCHR15_4_CTG8
bMO220P3
AC243660.3
finished
5 CH17-184J24
HSCHR15_4_CTG8
bMO184J24
AC243913.2
finished
6 CH17-71L23
HSCHR15_4_CTG8
bMO71L23
AC243951.3
finished
7 CH17-169A12
HSCHR15_4_CTG8
bMO169A12
AC243657.2
finished
  GAP (type-2) length 112000 bps    
9 CH17-215I18
HSCHR15_4_CTG8
bMO215I18
AC243901.3
finished
10 CH17-5C18
HSCHR15_4_CTG8
bMO5C18
AC243902.3
finished
11 CH17-245F8
HSCHR15_4_CTG8
bMO245F8
AC243686.3
finished
12 CH17-248A6
HSCHR15_4_CTG8
bMO248A6
AC243652.4
finished
13 CH17-141A19
HSCHR15_4_CTG8
bMO141A19
AC243587.3
finished
14 CH17-465I15
HSCHR15_4_CTG8
bMO465I15
AC244165.2
finished
15 CH17-455O19
HSCHR15_4_CTG8
bMO455O19
AC243949.2
finished
16 CH17-339B3
HSCHR15_4_CTG8
bMO339B3
AC243790.3
finished
17 CH17-267D1
HSCHR15_4_CTG8
bMO267D1
AC243679.3
finished
  GAP (type-2) length 27375 bps    
19 CH17-250J22
HSCHR15_4_CTG8
bMO250J22
AC243687.3
finished
20 CH17-6K7
HSCHR15_4_CTG8
bMO6K7
AC244012.2
finished
21 CH17-404C3
HSCHR15_4_CTG8
bMO404C3
AC243758.2
finished
22 CH17-10D14
HSCHR15_4_CTG8
bMO10D14
AC243586.3
finished
23 CH17-151A19
HSCHR15_4_CTG8
bMO151A19
AC243650.3
finished
24 CH17-287M11
HSCHR15_4_CTG8
bMO287M11
AC243688.3
finished
25 CH17-406C17
HSCHR15_4_CTG8
bMO406C17
AC243759.3
finished
26 CH17-245I8
HSCHR15_4_CTG8
bMO245I8
AC243649.4
finished
27 CH17-331I9
HSCHR15_4_CTG8
bMO331I9
AC243734.3
finished
28 CH17-50J22
HSCHR15_4_CTG8
bMO50J22
AC243827.3
finished
29 CH17-472E17
HSCHR15_4_CTG8
bMO472E17
AC244501.1
unfinished
  GAP (type-2) length 53810 bps    
31 CH17-280K8
HSCHR15_4_CTG8
bMO280K8
AC243655.3
finished
32 CH17-325P22
HSCHR15_4_CTG8
bMO325P22
AC243948.1
finished
33 RP11-88O16
HSCHR15_4_CTG8
bA88O16
AC090982.4
finished
  GAP (type-3) length unknown    
35 ABC13-945422C12
HSCHR15_2_CTG3
f13A945422C12
AC225825.3
finished
36 RP11-467N20
HSCHR15_2_CTG3
bA467N20
AC116165.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 158510 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC079090.4 1 158510 -
158511 385255 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC243653.3 1 226745 -
385256 546077 3 N 160822 contig yes # ALIGN GENUS
546078 743331 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AC243660.3 1 197254 -
743332 949827 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AC243913.2 1 206496 -
949828 1054707 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AC243951.3 1 104880 -
1054708 1139464 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AC243657.2 122707 207463 +
1139465 1251464 8 N 112000 contig yes # ALIGN GENUS
1251465 1464207 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243901.3 1 212743 -
1464208 1644986 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243902.3 1 180779 -
1644987 1826620 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243686.3 34966 216599 +
1826621 1986454 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243652.4 45976 205809 +
1986455 2153678 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243587.3 50260 217483 +
2153679 2338445 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC244165.2 21501 206267 +
2338446 2473555 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243949.2 1 135110 -
2473556 2622877 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243790.3 1 149322 -
2622878 2814973 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 17 AC243679.3 1 192096 -
2814974 2842348 18 N 27375 contig yes # ALIGN GENUS
2842349 3062195 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243687.3 1 219847 +
3062196 3203484 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC244012.2 1 141289 -
3203485 3407969 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243758.2 1 204485 -
3407970 3598413 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243586.3 1 190444 -
3598414 3753278 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243650.3 84236 239100 +
3753279 3956861 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243688.3 1 203583 -
3956862 4136077 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243759.3 14039 193254 +
4136078 4288480 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243649.4 1 152403 -
4288481 4455834 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243734.3 1 167354 -
4455835 4653175 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 28 AC243827.3 1 197341 -
4653176 4703175 29 N 50000 clone no
4703176 4756985 30 N 53810 contig yes # ALIGN GENUS
4756986 4968245 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC243655.3 1 211260 +
4968246 5151255 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC243948.1 1 183010 -
5151256 5220683 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC090982.4 1 69428 -
5220684 5270683 34 N 50000 contig no
5270684 5308929 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 AC225825.3 1 38246 -
5308930 5467067 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 AC116165.8 1 158138 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-268O3
HSCHR15_4_CTG8
bA268O3
-
-
AC079090.4
finished
158510 RPCI-11.1 5' / 3'
1 / 226745
- / -
6
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CH17-248C21
HSCHR15_4_CTG8
bMO248C21
-
-
AC243653.3
finished
226751 CHORI-17        
  GAP (type-2) length 160822 bps                  
4 CH17-220P3
HSCHR15_4_CTG8
bMO220P3
-
-
AC243660.3
finished
197254 CHORI-17 5' / 3'
1 / 206496
- / -
4079
0.05
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH17-184J24
HSCHR15_4_CTG8
bMO184J24
-
-
AC243913.2
finished
210575 CHORI-17 5' / 3'
1 / 104880
- / -
103048
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
6 CH17-71L23
HSCHR15_4_CTG8
bMO71L23
-
-
AC243951.3
finished
207928 CHORI-17 5' / 5'
1 / 122707
- / -
122706
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
7 CH17-169A12
HSCHR15_4_CTG8
bMO169A12
-
-
AC243657.2
finished
207463 CHORI-17        
  GAP (type-2) length 112000 bps                  
9 CH17-215I18
HSCHR15_4_CTG8
bMO215I18
-
-
AC243901.3
finished
212743 CHORI-17 5' / 3'
1 / 180779
- / -
60515
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 CH17-5C18
HSCHR15_4_CTG8
bMO5C18
-
-
AC243902.3
finished
241294 CHORI-17 5' / 5'
1 / 34966
- / -
34962
0.72
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
11 CH17-245F8
HSCHR15_4_CTG8
bMO245F8
-
-
AC243686.3
finished
216599 CHORI-17 3' / 5'
216599 / 45976
- / -
45975
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
12 CH17-248A6
HSCHR15_4_CTG8
bMO248A6
-
-
AC243652.4
finished
205809 CHORI-17 3' / 5'
205809 / 50260
- / -
50259
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
13 CH17-141A19
HSCHR15_4_CTG8
bMO141A19
-
-
AC243587.3
finished
217483 CHORI-17 3' / 5'
217483 / 21501
- / -
21500
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
14 CH17-465I15
HSCHR15_4_CTG8
bMO465I15
-
-
AC244165.2
finished
206267 CHORI-17 3' / 3'
206267 / 135110
- / -
61694
2.8
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
15 CH17-455O19
HSCHR15_4_CTG8
bMO455O19
-
-
AC243949.2
finished
196830 CHORI-17 5' / 3'
1 / 149322
- / -
56244
0.02
Identified
2014-04-09
fetch_ncbi...
humpub
 
16 CH17-339B3
HSCHR15_4_CTG8
bMO339B3
-
-
AC243790.3
finished
205570 CHORI-17 5' / 3'
1 / 192096
- / -
29815
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
17 CH17-267D1
HSCHR15_4_CTG8
bMO267D1
-
-
AC243679.3
finished
221911 CHORI-17        
  GAP (type-2) length 27375 bps                  
19 CH17-250J22
HSCHR15_4_CTG8
bMO250J22
-
-
AC243687.3
finished
219847 CHORI-17 3' / 3'
219847 / 141289
- / -
55699
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
20 CH17-6K7
HSCHR15_4_CTG8
bMO6K7
-
-
AC244012.2
finished
196989 CHORI-17 5' / 3'
1 / 204485
- / -
3953
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
21 CH17-404C3
HSCHR15_4_CTG8
bMO404C3
-
-
AC243758.2
finished
208438 CHORI-17 5' / 3'
1 / 190444
- / -
30782
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
22 CH17-10D14
HSCHR15_4_CTG8
bMO10D14
-
-
AC243586.3
finished
221226 CHORI-17 5' / 5'
1 / 84236
- / -
84235
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
23 CH17-151A19
HSCHR15_4_CTG8
bMO151A19
-
-
AC243650.3
finished
239100 CHORI-17 3' / 3'
239100 / 203583
- / -
27760
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
24 CH17-287M11
HSCHR15_4_CTG8
bMO287M11
-
-
AC243688.3
finished
231344 CHORI-17 5' / 5'
1 / 14039
- / -
14038
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
25 CH17-406C17
HSCHR15_4_CTG8
bMO406C17
-
-
AC243759.3
finished
193254 CHORI-17 3' / 3'
193254 / 152403
- / -
69763
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
26 CH17-245I8
HSCHR15_4_CTG8
bMO245I8
-
-
AC243649.4
finished
222166 CHORI-17 5' / 3'
1 / 167354
- / -
42520
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
27 CH17-331I9
HSCHR15_4_CTG8
bMO331I9
-
-
AC243734.3
finished
209874 CHORI-17 5' / 3'
1 / 197341
- / -
21619
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
28 CH17-50J22
HSCHR15_4_CTG8
bMO50J22
-
-
AC243827.3
finished
218960 CHORI-17 5' / 5'
1 / 49614
- / -
49541
0.52
Identified
2014-04-09
fetch_ncbi...
humpub
 
29 CH17-472E17
HSCHR15_4_CTG8
bMO472E17
-
-
AC244501.1
unfinished
182048 CHORI-17        
  GAP (type-2) length 53810 bps                  
31 CH17-280K8
HSCHR15_4_CTG8
bMO280K8
-
-
AC243655.3
finished
211260 CHORI-17 3' / 3'
211260 / 183010
- / -
29495
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
32 CH17-325P22
HSCHR15_4_CTG8
bMO325P22
-
-
AC243948.1
finished
212505 CHORI-17 5' / 3'
1 / 69428
- / -
125996
0.35
Identified
2014-04-09
fetch_ncbi...
humpub
 
33 RP11-88O16
HSCHR15_4_CTG8
bA88O16
-
-
AC090982.4
finished
195549 RPCI-11.1        
  GAP (type-3) length unknown                  
35 ABC13-945422C12
HSCHR15_2_CTG3
f13A945422C12
-
-
AC225825.3
finished
38246 ABC13 5' / 3'
1 / 158138
- / 62
22182
1.33
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
36 RP11-467N20
HSCHR15_2_CTG3
bA467N20
-
-
AC116165.8
finished
180405 RPCI-11.2        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-2
4
type-3
1
Total clones
31
Clone HTGS Phases
finished
30
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,118,845
Total finished length of fin clones w/ overlap
6,132,150
Total finished length of fin clones w/o overlap
5,013,305
Total overlap length of fin+unfin clones
1,168,386
Total finished length of fin+unfin clones w/ overlap
6,314,198
Total finished length of fin+unfin clones w/o overlap
5,145,812

Dovetails

# rank accession status length date
1 36 AC116165.8 unfinished 62 Thu, 24 Apr 2014 23:15

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Other links

* quick link - http://q.sanger.ac.uk/p7w6rbec