ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__X (TPF updated: 2014-07-26)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 WI2-1617O3
HSCHRX_2_CTG3
Cl/Pr fW1617O3/fW82516H2 swap
EPN details
BX511099.12
finished
2 LL0XNC01-148H9
HSCHRX_2_CTG3
Cl/Pr cU148H9/cUP1837 swap
EPN details
BX000476.5
finished
3 RP13-465B17
HSCHRX_2_CTG3
CONTAINER
bB465B17
EPN details
AL732314.18
finished
4
HSCHRX_2_CTG3
CONTAINED
KF458949
KF458949.1
finished
3 RP13-465B17
HSCHRX_2_CTG3
CONTAINER
bB465B17
EPN details
AL732314.18
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 25946 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX511099.12 1 25946 +
25947 57286 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX000476.5 2001 33340 +
57287 255682 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 2001 200396 +
255683 255983 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF458949.1 1 301 -
255984 274009 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 200698 218723 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 WI2-1617O3
HSCHRX_2_CTG3
Cl/Pr fW1617O3/fW82516H2 swap
EPN details
Analysed
19-FEB-04
BX511099.12
finished
25946 Whitehead fosmid 3' / 5'
25946 / 2001
- / -
2000
0
Identified
2014-07-26
fetch_ncbi...
humpub
 
2 LL0XNC01-148H9
HSCHRX_2_CTG3
Cl/Pr cU148H9/cUP1837 swap
EPN details
Submitted to EMBL
14-JAN-09
BX000476.5
finished
33340 LL0XNC01 3' / 5'
33340 / 2001
- / -
2000
0.05
Identified
2014-07-26
fetch_ncbi...
humpub
 
3 RP13-465B17
HSCHRX_2_CTG3
CONTAINER
bB465B17
EPN details
Submitted to EMBL
14-JAN-09
AL732314.18
finished
218723 RPCI-13.2 3' / 3'
200396 / 301
18026 / -
301
0.33
Identified
2014-07-26
fetch_ncbi...
humpub
 
4
HSCHRX_2_CTG3
CONTAINED
KF458949
-
-
KF458949.1
finished
301 - 5' / 5'
1 / 200698
- / 200396
301
0.33
Identified
2014-07-26
fetch_ncbi...
humpub
 
3 RP13-465B17
HSCHRX_2_CTG3
CONTAINER
bB465B17
EPN details
Submitted to EMBL
14-JAN-09
AL732314.18
finished
218723 RPCI-13.2        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,301
Total finished length of fin clones w/ overlap
278,310
Total finished length of fin clones w/o overlap
274,009
Total overlap length of fin+unfin clones
4,301
Total finished length of fin+unfin clones w/ overlap
278,310
Total finished length of fin+unfin clones w/o overlap
274,009

Dovetails

# rank accession status length date
1 3 AL732314.18 unfinished 18,026 Sat, 26 Jul 2014 00:51

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/op6qxggm