ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__X (TPF updated: 2014-10-22)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 WI2-769P15
HSCHRX_1_CTG3
Cl/Pr fW769P15/fW81109H8 swap
EPN details
BX649323.12
finished
2 LL0XNC01-148H9
HSCHRX_1_CTG3
Cl/Pr cU148H9/cUP1837 swap
EPN details
BX000476.5
finished
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
EPN details
AL732314.18
finished
4
HSCHRX_1_CTG3
CONTAINED
KF458949
KF458949.1
finished
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
EPN details
AL732314.18
finished
  GAP (type-3) length unknown    
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
EPN details
AL031000.1
finished
7 ABC9-41267300G24
HSCHRX_2_ctg12
CONTAINED
f9A41267300G24
AC207450.3
finished
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
EPN details
AL031000.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 37892 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX649323.12 1 37892 -
37893 68146 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX000476.5 3087 33340 +
68147 266542 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 2001 200396 +
266543 266843 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF458949.1 1 301 -
266844 284869 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 200698 218723 +
284870 334869 6 N 50000 contig no
334870 426254 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL031000.1 1 91385 +
426255 466346 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC207450.3 1 40092 -
466347 479175 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL031000.1 119201 132029 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 WI2-769P15
HSCHRX_1_CTG3
Cl/Pr fW769P15/fW81109H8 swap
EPN details
Analysed
02-JUL-04
BX649323.12
finished
37892 Whitehead fosmid 5' / 5'
1 / 3087
- / -
3085
7.97
Identified
2014-10-22
fetch_ncbi...
humpub
Certificate approved
2 LL0XNC01-148H9
HSCHRX_1_CTG3
Cl/Pr cU148H9/cUP1837 swap
EPN details
Submitted to EMBL
14-JAN-09
BX000476.5
finished
33340 LL0XNC01 3' / 5'
33340 / 2001
- / -
2000
0.05
Identified
2014-10-22
fetch_ncbi...
humpub
 
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
EPN details
Submitted to EMBL
14-JAN-09
AL732314.18
finished
218723 RPCI-13.2 3' / 3'
200396 / 301
18026 / -
301
0.33
Identified
2014-10-22
fetch_ncbi...
humpub
 
4
HSCHRX_1_CTG3
CONTAINED
KF458949
-
-
KF458949.1
finished
301 - 5' / 5'
1 / 200698
- / 200396
301
0.33
Identified
2014-10-22
fetch_ncbi...
humpub
 
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
EPN details
Submitted to EMBL
14-JAN-09
AL732314.18
finished
218723 RPCI-13.2        
  GAP (type-3) length unknown                  
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
EPN details
Submitted to EMBL
14-JAN-09
AL031000.1
finished
132029 RPCI-4 3' / 3'
91385 / 40092
12829 / -
40092
45.6
Identified
2014-10-22
fetch_ncbi...
humpub
Certificate approved
7 ABC9-41267300G24
HSCHRX_2_ctg12
CONTAINED
f9A41267300G24
-
-
AC207450.3
finished
40092 ABC9 5' / 5'
1 / 119201
- / 91385
40092
45.6
Identified
2014-10-22
fetch_ncbi...
humpub
Certificate approved
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
EPN details
Submitted to EMBL
14-JAN-09
AL031000.1
finished
132029 RPCI-4        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
33,104
Total finished length of fin clones w/ overlap
462,377
Total finished length of fin clones w/o overlap
429,273
Total overlap length of fin+unfin clones
33,104
Total finished length of fin+unfin clones w/ overlap
462,377
Total finished length of fin+unfin clones w/o overlap
429,273

Dovetails

# rank accession status length date
1 3 AL732314.18 unfinished 18,026 Wed, 22 Oct 2014 00:06
2 6 AL031000.1 unfinished 12,829 Wed, 22 Oct 2014 00:06

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Other links

* quick link - http://q.sanger.ac.uk/l9ttvs19