ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__X (TPF updated: 2016-12-07)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 WI2-769P15
HSCHRX_1_CTG3
fW769P15
BX649323.12
finished
2 LL0XNC01-148H9
HSCHRX_1_CTG3
cU148H9
BX000476.5
finished
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
AL732314.18
finished
4
HSCHRX_1_CTG3
CONTAINED
KF458949
KF458949.1
finished
3 RP13-465B17
HSCHRX_1_CTG3
CONTAINER
bB465B17
AL732314.18
finished
  GAP (type-3) length unknown    
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
AL031000.1
finished
7 ABC9-41267300G24
HSCHRX_2_ctg12
CONTAINED
f9A41267300G24
AC207450.3
finished
6 RP4-795G23
HSCHRX_2_ctg12
CONTAINER
dJ795G23
AL031000.1
finished
  GAP (type-3) length unknown    
9 RP11-323F10
HSCHRX_3_CTG7
CONTAINER
bA323F10
AC017047.4
finished
10 ABC9-44025900M3
HSCHRX_3_CTG7
CONTAINED
f9A44025900M3
AC209283.2
finished
9 RP11-323F10
HSCHRX_3_CTG7
CONTAINER
bA323F10
AC017047.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 37892 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX649323.12 1 37892 -
37893 68146 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX000476.5 3087 33340 +
68147 266542 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 2001 200396 +
266543 266843 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF458949.1 1 301 -
266844 284869 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL732314.18 200698 218723 +
284870 334869 6 N 50000 contig no
334870 426254 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL031000.1 1 91385 +
426255 466346 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC207450.3 1 40092 -
466347 479175 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL031000.1 119201 132029 +
479176 529175 10 N 50000 contig no
529176 604335 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC017047.4 105163 180322 -
604336 644555 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC209283.2 1 40220 +
644556 718989 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC017047.4 1 74434 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
138,992
Total finished length of fin clones w/ overlap
682,919
Total finished length of fin clones w/o overlap
543,927
Total overlap length of fin+unfin clones
138,992
Total finished length of fin+unfin clones w/ overlap
682,919
Total finished length of fin+unfin clones w/o overlap
543,927

Dovetails

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# rank accession status length date
1 3 AL732314 unfinished 18,026 Wed, 07 Dec 2016 00:15
2 6 AL031000 unfinished 12,829 Wed, 07 Dec 2016 00:15

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