ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__4 (TPF updated: 2016-05-30)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 RP11-45F23
HSCHR4_7_CTG12
bA45F23
AC020698.4
finished
2 CH17-330E15
HSCHR4_7_CTG12
bMO330E15
AC243969.4
finished
3 RP11-463J17
HSCHR4_7_CTG12
CONTAINER
bA463J17
AF250324.1
finished
4
HSCHR4_7_CTG12
CONTAINED
KF510253
KF510253.1
finished
3 RP11-463J17
HSCHR4_7_CTG12
CONTAINER
bA463J17
AF250324.1
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 126005 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC020698.4 22414 148418 -
126006 339406 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC243969.4 1 213401 +
339407 470679 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AF250324.1 30635 161907 +
470680 471045 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF510253.1 1 366 -
471046 554479 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AF250324.1 162275 245708 +

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-45F23
HSCHR4_7_CTG12
bA45F23
-
-
AC020698.4
finished
148418 RPCI-11.1 5' / 5'
22414 / 1
- / -
22413
0.36
Identified
2016-02-24
agp2oracle
humpub
Certificate submitted, not yet approved
2 CH17-330E15
HSCHR4_7_CTG12
bMO330E15
-
-
AC243969.4
finished
213401 CHORI-17 3' / 5'
213401 / 30635
- / -
30542
5.43
Identified
2016-02-24
agp2oracle
humpub
Certificate submitted, not yet approved
3 RP11-463J17
HSCHR4_7_CTG12
CONTAINER
bA463J17
-
-
AF250324.1
finished
245708 RPCI-11.2 3' / 3'
161907 / 366
83434 / -
366
0.27
Identified
2016-02-24
fetch_ncbi...
humpub
 
4
HSCHR4_7_CTG12
CONTAINED
KF510253
-
-
KF510253.1
finished
366 - 5' / 5'
1 / 162275
- / 161907
366
0.27
Identified
2016-02-24
fetch_ncbi...
humpub
 
3 RP11-463J17
HSCHR4_7_CTG12
CONTAINER
bA463J17
-
-
AF250324.1
finished
245708 RPCI-11.2        

Statistics

Help

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
53,321
Total finished length of fin clones w/ overlap
607,893
Total finished length of fin clones w/o overlap
554,572
Total overlap length of fin+unfin clones
53,321
Total finished length of fin+unfin clones w/ overlap
607,893
Total finished length of fin+unfin clones w/o overlap
554,572

Dovetails

Help

# rank accession status length date
1 3 AF250324 unfinished 83,434 Sun, 29 May 2016 23:54

Search

Search Project, Accession or International clone name:

Select region

Other links

Short-link