ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__13 (TPF updated: 2015-07-02)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-315H15
Hschr13_1_ctg1
bA315H15
AL162499.20
finished
2 1716N4
Hschr13_1_ctg1
1716N4
AC238892.3
finished
3 RP11-480K16
Hschr13_1_ctg1
bA480K16
AL160033.21
finished
  GAP (type-3) length unknown    
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
AL136438.10
finished
6 ABC9-43848000H5
Hschr13_1_ctg2
CONTAINED
f9A43848000H5
AC206479.3
finished
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
AL136438.10
finished
  GAP (type-3) length unknown    
8 RP11-38M15
Hschr13_1_ctg3
bA38M15
AL391382.10
finished
9 ABC10-44495600J7
Hschr13_1_ctg3
f10A44495600J7
AC203639.2
finished
  GAP (type-3) length unknown    
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
AL158067.18
finished
12 ABC9-43896200K6
Hschr13_1_ctg4
CONTAINED
f9A43896200K6
AC204972.3
finished
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
AL158067.18
finished
  GAP (type-3) length unknown    
14 42420300M23
Hschr13_1_ctg5
42420300M23
FP565177.2
finished
15 WI2-3697E2
Hschr13_1_ctg5
fW3697E2
AC187648.1
finished
  GAP (type-3) length unknown    
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
AL354823.7
finished
18 ABC9-41234200G22
Hschr13_1_ctg6
CONTAINED
f9A41234200G22
AC207597.3
finished
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
AL354823.7
finished
  GAP (type-3) length unknown    
20 RP11-120L14
Hschr13_1_ctg7
CONTAINER
bA120L14
AL162493.21
finished
21 ABC9-43831400G1
Hschr13_1_ctg7
CONTAINED
f9A43831400G1
AC212759.2
finished
20 RP11-120L14
Hschr13_1_ctg7
CONTAINER
bA120L14
AL162493.21
finished
  GAP (type-3) length unknown    
23 RP11-67J18
Hschr13_1_ctg8
bA67J18
AL157771.11
finished
24 ABC10-44448000O6
Hschr13_1_ctg8
f10A44448000O6
AC225710.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 87291 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL162499.20 53617 140907 -
87292 124939 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC238892.3 1 37648 -
124940 307013 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL160033.21 289 182362 +
307014 357013 4 N 50000 contig no
357014 372074 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL136438.10 1 15061 +
372075 410484 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC206479.3 1 38410 -
410485 539319 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL136438.10 49485 178319 +
539320 589319 8 N 50000 contig no
589320 743513 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AL391382.10 1 154194 +
743514 783003 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AC203639.2 1 39490 +
783004 833003 11 N 50000 contig no
833004 876842 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AL158067.18 1 43839 +
876843 915771 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AC204972.3 1 38929 +
915772 1002237 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AL158067.18 78765 165230 +
1002238 1052237 15 N 50000 contig no
1052238 1080836 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 FP565177.2 1 28599 -
1080837 1089524 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC187648.1 1 8688 -
1089525 1139524 18 N 50000 contig no
1139525 1160284 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL354823.7 1 20760 +
1160285 1196836 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC207597.3 1 36552 +
1196837 1243456 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL354823.7 54472 101091 +
1243457 1293456 22 N 50000 contig no
1293457 1331573 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AL162493.21 1 38117 +
1331574 1372641 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC212759.2 1 41068 +
1372642 1461702 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AL162493.21 69023 158083 +
1461703 1511702 26 N 50000 contig no
1511703 1597408 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AL157771.11 1 85706 +
1597409 1637182 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AC225710.3 1 39774 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
349,699
Total finished length of fin clones w/ overlap
1,569,259
Total finished length of fin clones w/o overlap
1,219,560
Total overlap length of fin+unfin clones
349,699
Total finished length of fin+unfin clones w/ overlap
1,569,259
Total finished length of fin+unfin clones w/o overlap
1,219,560

Dovetails

# rank accession status length date
1 5 AL136438.10 unfinished 128,835 Wed, 01 Jul 2015 23:12
2 11 AL158067.18 unfinished 86,466 Wed, 01 Jul 2015 23:12
3 14 FP565177.2 unfinished 594 Wed, 01 Jul 2015 23:12
4 15 AC187648.1 unfinished 8,688 Wed, 01 Jul 2015 23:12
5 17 AL354823.7 unfinished 46,620 Wed, 01 Jul 2015 23:12

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Other links

* quick link - http://q.sanger.ac.uk/2e2nofzl