ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__13 (TPF updated: 2014-07-28)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-315H15
Hschr13_1_ctg1
bA315H15
EPN details
AL162499.20
finished
2 1716N4
Hschr13_1_ctg1
1716N4
AC238892.3
finished
3 RP11-480K16
Hschr13_1_ctg1
bA480K16
EPN details
AL160033.21
finished
  GAP (type-3) length unknown    
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
EPN details
AL136438.10
finished
6 ABC9-43848000H5
Hschr13_1_ctg2
CONTAINED
f9A43848000H5
AC206479.3
finished
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
EPN details
AL136438.10
finished
  GAP (type-3) length unknown    
8 RP11-38M15
Hschr13_1_ctg3
bA38M15
EPN details
AL391382.10
finished
9 ABC10-44495600J7
Hschr13_1_ctg3
f10A44495600J7
AC203639.2
finished
  GAP (type-3) length unknown    
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
EPN details
AL158067.18
finished
12 ABC9-43896200K6
Hschr13_1_ctg4
CONTAINED
f9A43896200K6
AC204972.3
finished
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
EPN details
AL158067.18
finished
  GAP (type-3) length unknown    
14 42420300M23
Hschr13_1_ctg5
Cl/Pr 42420300M23/f7A42420300M23 swap
EPN details
FP565177.2
finished
15 WI2-3697E2
Hschr13_1_ctg5
fW3697E2
AC187648.1
finished
  GAP (type-3) length unknown    
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
EPN details
AL354823.7
finished
18 ABC9-41234200G22
Hschr13_1_ctg6
CONTAINED
f9A41234200G22
AC207597.3
finished
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
EPN details
AL354823.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 87291 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL162499.20 53617 140907 -
87292 124939 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC238892.3 1 37648 -
124940 307013 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL160033.21 289 182362 +
307014 357013 4 N 50000 contig no
357014 372074 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL136438.10 1 15061 +
372075 410484 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC206479.3 1 38410 -
410485 539319 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL136438.10 49485 178319 +
539320 589319 8 N 50000 contig no
589320 743513 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AL391382.10 1 154194 +
743514 783003 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AC203639.2 1 39490 +
783004 833003 11 N 50000 contig no
833004 876842 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AL158067.18 1 43839 +
876843 915771 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AC204972.3 1 38929 +
915772 1002237 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 14 AL158067.18 78765 165230 +
1002238 1052237 15 N 50000 contig no
1052238 1080836 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 FP565177.2 1 28599 -
1080837 1089524 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC187648.1 1 8688 -
1089525 1139524 18 N 50000 contig no
1139525 1160284 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL354823.7 1 20760 +
1160285 1196836 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC207597.3 1 36552 +
1196837 1243456 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL354823.7 54472 101091 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-315H15
Hschr13_1_ctg1
bA315H15
EPN details
Submitted to EMBL
12-JAN-09
AL162499.20
finished
140907 RPCI-11.2 5' / 3'
53617 / 37648
- / -
37219
51.74
Identified
2014-07-28
fetch_ncbi...
humpub
 
2 1716N4
Hschr13_1_ctg1
1716N4
-
-
AC238892.3
finished
37649 - 5' / 5'
1 / 289
- / -
288
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
3 RP11-480K16
Hschr13_1_ctg1
bA480K16
EPN details
Submitted to EMBL
12-JAN-09
AL160033.21
finished
182362 RPCI-11.2        
  GAP (type-3) length unknown                  
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
EPN details
Submitted to EMBL
12-JAN-09
AL136438.10
finished
178319 RPCI-11.1 3' / 3'
15061 / 38410
128835 / -
38410
11.74
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate approved
6 ABC9-43848000H5
Hschr13_1_ctg2
CONTAINED
f9A43848000H5
-
-
AC206479.3
finished
38410 ABC9 5' / 5'
1 / 49485
- / 15061
38410
11.74
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate approved
5 RP11-111G7
Hschr13_1_ctg2
CONTAINER
bA111G7
EPN details
Submitted to EMBL
12-JAN-09
AL136438.10
finished
178319 RPCI-11.1        
  GAP (type-3) length unknown                  
8 RP11-38M15
Hschr13_1_ctg3
bA38M15
EPN details
Submitted to EMBL
12-JAN-09
AL391382.10
finished
186458 RPCI-11.1 3' / 5'
154194 / 1
- / -
32236
18.6
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate submitted, not yet approved
9 ABC10-44495600J7
Hschr13_1_ctg3
f10A44495600J7
-
-
AC203639.2
finished
39490 ABC10        
  GAP (type-3) length unknown                  
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
EPN details
Submitted to EMBL
12-JAN-09
AL158067.18
finished
165230 RPCI-11.1 3' / 5'
43839 / 1
86466 / -
39249
11.92
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate approved
12 ABC9-43896200K6
Hschr13_1_ctg4
CONTAINED
f9A43896200K6
-
-
AC204972.3
finished
39249 ABC9 3' / 5'
38929 / 78765
320 / 43839
39249
11.92
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate approved
11 RP11-86C3
Hschr13_1_ctg4
CONTAINER
bA86C3
EPN details
Submitted to EMBL
12-JAN-09
AL158067.18
finished
165230 RPCI-11.1        
  GAP (type-3) length unknown                  
14 42420300M23
Hschr13_1_ctg5
Cl/Pr 42420300M23/f7A42420300M23 swap
EPN details
Analysed
19-AUG-09
FP565177.2
finished
28599 - 5' / 3'
1 / 8688
- / 4510
27460
3.35
Identified
2014-07-27
agp2oracle
humpub
 
15 WI2-3697E2
Hschr13_1_ctg5
fW3697E2
-
-
AC187648.1
finished
40775 Whitehead fosmid        
  GAP (type-3) length unknown                  
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
EPN details
Submitted to EMBL
12-JAN-09
AL354823.7
finished
101091 RPCI-11.2 3' / 5'
20760 / 1
46620 / -
36552
8.64
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate submitted, not yet approved
18 ABC9-41234200G22
Hschr13_1_ctg6
CONTAINED
f9A41234200G22
-
-
AC207597.3
finished
36552 ABC9 3' / 5'
36552 / 54472
- / 20760
36552
8.64
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate submitted, not yet approved
17 RP11-452L13
Hschr13_1_ctg6
CONTAINER
bA452L13
EPN details
Submitted to EMBL
12-JAN-09
AL354823.7
finished
101091 RPCI-11.2        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
13
Clone HTGS Phases
finished
13
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
200,196
Total finished length of fin clones w/ overlap
1,215,091
Total finished length of fin clones w/o overlap
1,014,895
Total overlap length of fin+unfin clones
200,196
Total finished length of fin+unfin clones w/ overlap
1,215,091
Total finished length of fin+unfin clones w/o overlap
1,014,895

Dovetails

# rank accession status length date
1 5 AL136438.10 unfinished 128,835 Sun, 27 Jul 2014 23:20
2 11 AL158067.18 unfinished 86,466 Sun, 27 Jul 2014 23:20
3 14 FP565177.2 unfinished 594 Sun, 27 Jul 2014 23:20
4 15 AC187648.1 unfinished 8,688 Sun, 27 Jul 2014 23:20
5 17 AL354823.7 unfinished 46,620 Sun, 27 Jul 2014 23:20

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Other links

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