ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__5 (TPF updated: 2014-10-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-98J23
HSCHR5_1_CTG1_1
bA98J23
AC131392.2
finished
2 CH17-39B16
HSCHR5_1_CTG1_1
bMO39B16
AC245690.2
finished
3 CH17-133H2
HSCHR5_1_CTG1_1
bMO133H2
AC244635.3
finished
  GAP (type-2) length unknown    
5 CH17-64J14
HSCHR5_1_CTG1_1
bMO64J14
AC244260.3
finished
6 CH17-160G8
HSCHR5_1_CTG1_1
bMO160G8
AC243922.2
finished
7 CH17-468I21
HSCHR5_1_CTG1_1
bMO468I21
AC245931.3
finished
8 RP11-1174L13
HSCHR5_1_CTG1_1
bA1174L13
AC138832.2
finished
  GAP (type-3) length unknown    
10 RP11-423H2
HSCHR5_3_CTG5
bA423H2
AC106795.3
finished
11 ABC13-49738200M16
HSCHR5_3_CTG5
f13A49738200M16
AC236592.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 65703 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC131392.2 89101 154803 -
65704 269980 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC245690.2 1 204277 -
269981 408851 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC244635.3 1 138871 -
408852 458851 4 N 50000 contig yes
458852 686280 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC244260.3 1 227429 +
686281 837548 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC243922.2 1 151268 -
837549 1048302 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC245931.3 1 210754 -
1048303 1161462 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC138832.2 112225 225384 +
1161463 1211462 9 N 50000 contig no
1211463 1382070 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC106795.3 6509 177116 -
1382071 1415489 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC236592.3 1 33419 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-98J23
HSCHR5_1_CTG1_1
bA98J23
-
-
AC131392.2
finished
154803 RPCI-11.1 5' / 3'
89101 / 204277
- / -
89005
23.26
Identified
2014-10-02
fetch_ncbi...
humpub
Certificate approved
2 CH17-39B16
HSCHR5_1_CTG1_1
bMO39B16
-
-
AC245690.2
finished
204277 CHORI-17 5' / 3'
1 / 138871
- / -
75074
0
Identified
2014-10-02
fetch_ncbi...
humpub
 
3 CH17-133H2
HSCHR5_1_CTG1_1
bMO133H2
-
-
AC244635.3
finished
213945 CHORI-17        
  GAP (type-2) length unknown                  
5 CH17-64J14
HSCHR5_1_CTG1_1
bMO64J14
-
-
AC244260.3
finished
227429 CHORI-17 3' / 3'
227429 / 151268
- / -
77608
0
Identified
2014-10-02
fetch_ncbi...
humpub
 
6 CH17-160G8
HSCHR5_1_CTG1_1
bMO160G8
-
-
AC243922.2
finished
228876 CHORI-17 5' / 3'
1 / 210754
- / -
6
0
Identified
2014-10-02
fetch_ncbi...
humpub
 
7 CH17-468I21
HSCHR5_1_CTG1_1
bMO468I21
-
-
AC245931.3
finished
210760 CHORI-17 5' / 5'
1 / 112225
- / -
112167
0.19
Identified
2014-10-02
fetch_ncbi...
humpub
 
8 RP11-1174L13
HSCHR5_1_CTG1_1
bA1174L13
-
-
AC138832.2
finished
225384 RPCI-11.5        
  GAP (type-3) length unknown                  
10 RP11-423H2
HSCHR5_3_CTG5
bA423H2
-
-
AC106795.3
finished
177116 RPCI-11.2 5' / 3'
6509 / 33419
- / -
6504
0.28
Identified
2014-10-02
fetch_ncbi...
humpub
 
11 ABC13-49738200M16
HSCHR5_3_CTG5
f13A49738200M16
-
-
AC236592.3
finished
33419 ABC13        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
1
type-3
1
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
360,364
Total finished length of fin clones w/ overlap
1,676,009
Total finished length of fin clones w/o overlap
1,315,645
Total overlap length of fin+unfin clones
360,364
Total finished length of fin+unfin clones w/ overlap
1,676,009
Total finished length of fin+unfin clones w/o overlap
1,315,645

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Other links

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