ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__18 (TPF updated: 2014-10-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-849I19
Hschr18_alt2_ctg2_1
CONTAINER
bA849I19
EPN details
AC099689.4
finished
2 ABC11-47170100H15
Hschr18_alt2_ctg2_1
CONTAINED
f11A47170100H15
AC216001.4
finished
1 RP11-849I19
Hschr18_alt2_ctg2_1
CONTAINER
bA849I19
EPN details
AC099689.4
finished
  GAP (type-3) length unknown    
4 RP11-123I22
Hschr18_alt21_ctg2_1
CONTAINER
bA123I22
EPN details
AC012572.17
finished
5
Hschr18_alt21_ctg2_1
CONTAINED
KF456461
KF456461.1
finished
4 RP11-123I22
Hschr18_alt21_ctg2_1
CONTAINER
bA123I22
EPN details
AC012572.17
finished
6 ABC11-47243300J20
Hschr18_alt21_ctg2_1
f11A47243300J20
AC226756.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 125009 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC099689.4 1 125009 +
125010 161595 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC216001.4 1 36586 -
161596 205117 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC099689.4 157998 201519 +
205118 255117 4 N 50000 contig no
255118 393772 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC012572.17 1 138655 +
393773 394115 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 KF456461.1 1 343 -
394116 427754 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC012572.17 138999 172637 +
427755 443251 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AC226756.3 1 15497 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-849I19
Hschr18_alt2_ctg2_1
CONTAINER
bA849I19
EPN details
Externally Finished
21-JAN-13
AC099689.4
finished
201519 RPCI-11.3 3' / 3'
125009 / 36586
43522 / -
36586
18.99
Identified
2014-10-01
fetch_ncbi...
humpub
Certificate approved
2 ABC11-47170100H15
Hschr18_alt2_ctg2_1
CONTAINED
f11A47170100H15
-
-
AC216001.4
finished
36586 ABC11 5' / 5'
1 / 157998
- / 125009
36586
18.99
Identified
2014-10-01
fetch_ncbi...
humpub
Certificate approved
1 RP11-849I19
Hschr18_alt2_ctg2_1
CONTAINER
bA849I19
EPN details
Externally Finished
21-JAN-13
AC099689.4
finished
201519 RPCI-11.3        
  GAP (type-3) length unknown                  
4 RP11-123I22
Hschr18_alt21_ctg2_1
CONTAINER
bA123I22
EPN details
Externally Finished
21-JAN-13
AC012572.17
finished
172637 RPCI-11.1 3' / 3'
138655 / 343
33639 / -
343
0.29
Identified
2014-10-01
fetch_ncbi...
humpub
 
5
Hschr18_alt21_ctg2_1
CONTAINED
KF456461
-
-
KF456461.1
finished
343 - 5' / 5'
1 / 138999
- / 138655
343
0.29
Identified
2014-10-01
fetch_ncbi...
humpub
 
4 RP11-123I22
Hschr18_alt21_ctg2_1
CONTAINER
bA123I22
EPN details
Externally Finished
21-JAN-13
AC012572.17
finished
172637 RPCI-11.1 3' / 3'
172637 / 15497
- / -
20660
3.79
Identified
2014-10-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
6 ABC11-47243300J20
Hschr18_alt21_ctg2_1
f11A47243300J20
-
-
AC226756.3
finished
36361 ABC11        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
32,293
Total finished length of fin clones w/ overlap
447,446
Total finished length of fin clones w/o overlap
415,153
Total overlap length of fin+unfin clones
32,293
Total finished length of fin+unfin clones w/ overlap
447,446
Total finished length of fin+unfin clones w/o overlap
415,153

Dovetails

# rank accession status length date
1 1 AC099689.4 unfinished 43,522 Wed, 01 Oct 2014 23:24
2 4 AC012572.17 unfinished 33,639 Wed, 01 Oct 2014 23:24

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Other links

* quick link - http://q.sanger.ac.uk/ym1d86ny