ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__11 (TPF updated: 2014-09-30)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-1335O1
Hschr11_2_ctg1
bA1335O1
EPN details
AP006477.2
finished
2 DD0002R4YNU_A20
Hschr11_2_ctg1
DD0002R4YNU_A20
AC239872.3
finished
  GAP (type-3) length unknown    
4 RP13-25N22
Hschr11_2_ctg1_1
bB25N22
EPN details
AP006285.2
finished
5 RP11-269A12
Hschr11_2_ctg1_1
bA269A12
AC130310.17
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 71579 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AP006477.2 1 71579 +
71580 106711 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC239872.3 1 35132 -
106712 156711 3 N 50000 contig no
156712 234684 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AP006285.2 1 77973 +
234685 390221 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC130310.17 1 155537 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-1335O1
Hschr11_2_ctg1
bA1335O1
EPN details
Externally Finished
21-JAN-13
AP006477.2
finished
77332 RPCI-11.5 3' / 3'
71579 / 35132
- / -
5753
0.17
Identified
2014-09-30
fetch_ncbi...
humpub
 
2 DD0002R4YNU_A20
Hschr11_2_ctg1
DD0002R4YNU_A20
-
-
AC239872.3
finished
35132 -        
  GAP (type-3) length unknown                  
4 RP13-25N22
Hschr11_2_ctg1_1
bB25N22
EPN details
Externally Finished
21-JAN-13
AP006285.2
finished
190267 RPCI-13.1 3' / 5'
77973 / 1
- / -
108496
4.86
Identified
2014-09-30
fetch_ncbi...
humpub
Certificate approved
5 RP11-269A12
Hschr11_2_ctg1_1
bA269A12
-
-
AC130310.17
finished
155537 RPCI-11.1        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
114,249
Total finished length of fin clones w/ overlap
458,268
Total finished length of fin clones w/o overlap
344,019
Total overlap length of fin+unfin clones
114,249
Total finished length of fin+unfin clones w/ overlap
458,268
Total finished length of fin+unfin clones w/o overlap
344,019

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