ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__11 (TPF updated: 2015-05-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-1335O1
Hschr11_2_ctg1
bA1335O1
AP006477.2
finished
2 DD0002R4YNU_A20
Hschr11_2_ctg1
DD0002R4YNU_A20
AC239872.3
finished
  GAP (type-3) length unknown    
4 RP13-25N22
Hschr11_2_ctg1_1
bB25N22
AP006285.2
finished
5 RP11-269A12
Hschr11_2_ctg1_1
bA269A12
AC130310.17
finished
  GAP (type-3) length unknown    
7 RP11-494M8
Hschr11_1_ctg1_2
CONTAINER
bA494M8
AC044810.7
finished
8 ABC12-46337700I3
Hschr11_1_ctg1_2
CONTAINED
f12A46337700I3
AC243812.1
finished
7 RP11-494M8
Hschr11_1_ctg1_2
CONTAINER
bA494M8
AC044810.7
finished
9
Hschr11_1_ctg1_2
CONTAINED
KF459744
KF459744.1
finished
7 RP11-494M8
Hschr11_1_ctg1_2
CONTAINER
bA494M8
AC044810.7
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 71579 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AP006477.2 1 71579 +
71580 106711 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC239872.3 1 35132 -
106712 156711 3 N 50000 contig no
156712 234684 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AP006285.2 1 77973 +
234685 390221 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC130310.17 1 155537 +
390222 440221 6 N 50000 contig no
440222 464823 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC044810.7 1 24602 +
464824 505595 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC243812.1 1 40772 +
505596 530361 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC044810.7 55249 80014 +
530362 530747 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 KF459744.1 1 386 +
530748 644644 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC044810.7 80401 194297 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
283,944
Total finished length of fin clones w/ overlap
693,723
Total finished length of fin clones w/o overlap
409,779
Total overlap length of fin+unfin clones
283,944
Total finished length of fin+unfin clones w/ overlap
693,723
Total finished length of fin+unfin clones w/o overlap
409,779

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* quick link - http://q.sanger.ac.uk/gqv1etwk