ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__14 (TPF updated: 2015-07-28)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-248B24
HSCHR14_1_CTG1
CONTAINER
bA248B24
AL133373.5
finished
2 ABC13-47640400A11
HSCHR14_1_CTG1
CONTAINED
f13A47640400A11
AC215700.3
finished
1 RP11-248B24
HSCHR14_1_CTG1
CONTAINER
bA248B24
AL133373.5
finished
3 RP11-747H7
HSCHR14_1_CTG1
bA747H7
AL121839.3
finished
  GAP (type-3) length unknown    
5 RP11-614O9
HSCHR14_2_CTG1
CONTAINER
bA614O9
BX927359.1
finished
6 ABC12-46662500D19
HSCHR14_2_CTG1
CONTAINED
f12A46662500D19
AC207871.4
finished
5 RP11-614O9
HSCHR14_2_CTG1
CONTAINER
bA614O9
BX927359.1
finished
  GAP (type-3) length unknown    
8 RP11-731F5
HSCHR14_3_CTG1
CONTAINER
bA731F5
AL928742.3
finished
9 ABC14-1014314L10
HSCHR14_3_CTG1
CONTAINED
f14A1014314L10
AC234458.2
finished
8 RP11-731F5
HSCHR14_3_CTG1
CONTAINER
bA731F5
AL928742.3
finished
10
HSCHR14_3_CTG1
AL928761
AL928761.2
finished
11
HSCHR14_3_CTG1
AL928769
AL928769.1
finished
12
HSCHR14_3_CTG1
AL928765
AL928765.1
finished
13
HSCHR14_3_CTG1
AL928767
AL928767.1
finished
14
HSCHR14_3_CTG1
AL928762
AL928762.2
finished
15 JAP2
HSCHR14_3_CTG1
JAP2
AL928768.1
finished
16 CTD-2194O15
HSCHR14_3_CTG1
bK2194O15
AL901608.1
finished
17 RP11-417P24
HSCHR14_3_CTG1
bA417P24
AL122127.6
finished
18 CH17-185P21
HSCHR14_3_CTG1
bMO185P21
AC246787.2
finished
19 CH17-262H11
HSCHR14_3_CTG1
bMO262H11
AC244226.3
finished
20 CH17-224D4
HSCHR14_3_CTG1
bMO224D4
AC247036.3
finished
21 CH17-60O17
HSCHR14_3_CTG1
CONTAINER
bMO60O17
AC245166.2
finished
22 ABC10-44687300P14
HSCHR14_3_CTG1
CONTAINED
f10A44687300P14
AC234301.2
finished
21 CH17-60O17
HSCHR14_3_CTG1
CONTAINER
bMO60O17
AC245166.2
finished
23 CH17-268I9
HSCHR14_3_CTG1
bMO268I9
AC244452.3
finished
24 CH17-212P11
HSCHR14_3_CTG1
CONTAINER
bMO212P11
AC245369.4
finished
25 ABC13-48573200C14
HSCHR14_3_CTG1
CONTAINED
f13A48573200C14
AC242528.2
finished
24 CH17-212P11
HSCHR14_3_CTG1
CONTAINER
bMO212P11
AC245369.4
finished
26 CH17-314I7
HSCHR14_3_CTG1
bMO314I7
AC245023.2
finished
  GAP (type-3) length unknown    
28 RP11-862G15
HSCHR14_7_CTG1
CONTAINER
bA862G15
AL117192.5
finished
29
HSCHR14_7_CTG1
CONTAINED
KF455995
KF455995.1
finished
28 RP11-862G15
HSCHR14_7_CTG1
CONTAINER
bA862G15
AL117192.5
finished
30 RP11-371E8
HSCHR14_7_CTG1
CONTAINER
bA371E8
AL110118.7
finished
31
HSCHR14_7_CTG1
CONTAINED
KF573699
KF573699.1
finished
30 RP11-371E8
HSCHR14_7_CTG1
CONTAINER
bA371E8
AL110118.7
finished
32 RP11-85G20
HSCHR14_7_CTG1
bA85G20
AL132838.4
finished
33 RP11-120E11
HSCHR14_7_CTG1
bA120E11
AL122023.3
finished
34 CTD-2022M23
HSCHR14_7_CTG1
bK2022M23
AL136338.4
finished
35 RP11-187A6
HSCHR14_7_CTG1
CONTAINER
bA187A6
AL157858.5
finished
36
HSCHR14_7_CTG1
CONTAINED
KF455993
KF455993.1
finished
35 RP11-187A6
HSCHR14_7_CTG1
CONTAINER
bA187A6
AL157858.5
finished
37 RP11-131H24
HSCHR14_7_CTG1
bA131H24
AL132642.4
finished
38 RP11-1089B7
HSCHR14_7_CTG1
bA1089B7
AL079302.7
finished
39 CTD-2068J7
HSCHR14_7_CTG1
CONTAINER
bK2068J7
AL121838.4
finished
40
HSCHR14_7_CTG1
CONTAINED
KF573698
KF573698.1
finished
39 CTD-2068J7
HSCHR14_7_CTG1
CONTAINER
bK2068J7
AL121838.4
finished
41
HSCHR14_7_CTG1
CONTAINED
KF455994
KF455994.1
finished
39 CTD-2068J7
HSCHR14_7_CTG1
CONTAINER
bK2068J7
AL121838.4
finished
42 RP11-304M6
HSCHR14_7_CTG1
CONTAINER
bA304M6
AL117259.6
finished
43
HSCHR14_7_CTG1
CONTAINED
KF455989
KF455989.1
finished
42 RP11-304M6
HSCHR14_7_CTG1
CONTAINER
bA304M6
AL117259.6
finished
44
HSCHR14_7_CTG1
CONTAINED
KF455992
KF455992.1
finished
42 RP11-304M6
HSCHR14_7_CTG1
CONTAINER
bA304M6
AL117259.6
finished
45 ABC13-988622F7
HSCHR14_7_CTG1
f13A988622F7
AC235087.2
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 93305 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL133373.5 69639 162943 -
93306 129031 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC215700.3 1 35726 +
129032 165959 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL133373.5 644 37571 -
165960 345556 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL121839.3 1 179597 -
345557 395556 5 N 50000 contig no
395557 412787 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX927359.1 1 17231 +
412788 454043 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 AC207871.4 1 41256 +
454044 576341 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 BX927359.1 51344 173641 +
576342 626341 9 N 50000 contig no
626342 718132 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928742.3 84447 176237 -
718133 750690 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC234458.2 14 32571 +
750691 802776 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928742.3 574 52659 -
802777 814816 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928761.2 1 12040 -
814817 824673 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928769.1 1501 11357 -
824674 832012 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928765.1 2 7340 -
832013 842597 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928767.1 25 10609 -
842598 844979 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928762.2 14 2395 -
844980 853804 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL928768.1 1 8825 -
853805 875615 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL901608.1 13168 34978 -
875616 932015 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AL122127.6 2 56401 +
932016 1136563 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC246787.2 1 204548 +
1136564 1227734 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC244226.3 1 91171 -
1227735 1356219 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC247036.3 1 128485 -
1356220 1490607 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC245166.2 73298 207685 -
1490608 1531513 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC234301.2 1 40906 +
1531514 1587814 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC245166.2 1 56301 -
1587815 1803864 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC244452.3 22461 238510 +
1803865 1911673 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC245369.4 49239 157047 +
1911674 1945230 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC242528.2 2 33558 +
1945231 1947485 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC245369.4 191110 193364 +
1947486 2029272 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 31 AC245023.2 129890 211676 +
2029273 2079272 32 N 50000 contig no
2079273 2105759 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL117192.5 184383 210869 -
2105760 2106117 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF455995.1 1 358 -
2106118 2290141 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL117192.5 1 184024 -
2290142 2407908 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL110118.7 15084 132850 -
2407909 2408427 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF573699.1 1 519 -
2408428 2422160 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL110118.7 831 14563 -
2422161 2476666 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL132838.4 4285 58790 +
2476667 2647094 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL122023.3 2 170429 +
2647095 2788270 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL136338.4 1 141176 -
2788271 2839084 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL157858.5 129180 179993 -
2839085 2839477 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF455993.1 1 393 -
2839478 2966670 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL157858.5 1594 128786 -
2966671 3147312 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL132642.4 2 180643 +
3147313 3310943 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL079302.7 32452 196082 +
3310944 3315790 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL121838.4 2 4848 +
3315791 3316276 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF573698.1 1 486 -
3316277 3340415 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL121838.4 5326 29464 +
3340416 3340753 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF455994.1 1 338 -
3340754 3409328 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL121838.4 29803 98377 +
3409329 3531253 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL117259.6 59517 181441 -
3531254 3531506 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF455989.1 1 253 -
3531507 3556475 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL117259.6 34295 59263 -
3556476 3556861 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 KF455992.1 1 386 -
3556862 3561346 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AL117259.6 29424 33908 -
3561347 3596747 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 57 AC235087.2 1 35401 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
42
Clone HTGS Phases
finished
42
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
710,575
Total finished length of fin clones w/ overlap
4,444,827
Total finished length of fin clones w/o overlap
3,734,252
Total overlap length of fin+unfin clones
710,575
Total finished length of fin+unfin clones w/ overlap
4,444,827
Total finished length of fin+unfin clones w/o overlap
3,734,252

Dovetails

# rank accession status length date
1 1 AL133373.5 unfinished 37,571 Mon, 27 Jul 2015 23:17
2 5 BX927359.1 unfinished 122,298 Mon, 27 Jul 2015 23:17
3 8 AL928742.3 unfinished 52,659 Mon, 27 Jul 2015 23:17
4 9 AC234458.2 unfinished 13 Mon, 27 Jul 2015 23:17
5 11 AL928769.1 unfinished 5 Mon, 27 Jul 2015 23:17
6 12 AL928765.1 unfinished 1 Mon, 27 Jul 2015 23:17
7 12 AL928765.1 unfinished 1 Mon, 27 Jul 2015 23:17
8 14 AL928762.2 unfinished 4 Mon, 27 Jul 2015 23:17
9 21 AC245166.2 unfinished 56,301 Mon, 27 Jul 2015 23:17
10 24 AC245369.4 unfinished 2,255 Mon, 27 Jul 2015 23:17
11 25 AC242528.2 unfinished 1 Mon, 27 Jul 2015 23:17
12 28 AL117192.5 unfinished 184,024 Mon, 27 Jul 2015 23:17
13 30 AL110118.7 unfinished 14,563 Mon, 27 Jul 2015 23:17
14 35 AL157858.5 unfinished 128,786 Mon, 27 Jul 2015 23:17
15 39 AL121838.4 unfinished 94,354 Mon, 27 Jul 2015 23:17
16 42 AL117259.6 unfinished 59,263 Mon, 27 Jul 2015 23:17

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Other links

* quick link - http://q.sanger.ac.uk/dzzu4wq3