ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_9__19 (TPF updated: 2015-08-31)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
HSCHR19_4_CTG3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
AC012314.8
finished
3 CTD-2337J16
HSCHR19_4_CTG3_1
bK2337J16
AC010492.9
finished
4 LLNLR-268G8
HSCHR19_4_CTG3_1
llnlrE268G8
AC098789.2
finished
5 LLNLR-260H6
HSCHR19_4_CTG3_1
llnlrE260H6
AC010518.7
finished
6 LLNLF-191E4
HSCHR19_4_CTG3_1
llnlfE191E4
AC008984.5
finished
7 CTD-2587H19
HSCHR19_4_CTG3_1
bK2587H19
AC008746.10
finished
8 LLNLR-308D7
HSCHR19_4_CTG3_1
llnlrE308D7
AC104536.2
finished
9 CTB-83J4
HSCHR19_4_CTG3_1
bK83J4
AC009892.5
finished
10 LLNLF-139A9
HSCHR19_4_CTG3_1
llnlfE139A9
AC011515.4
finished
11 LLNLR-250B1
HSCHR19_4_CTG3_1
llnlrE250B1
AC098784.2
finished
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
AC006293.1
finished
13
HSCHR19_4_CTG3_1
CONTAINED
KF459842
KF459842.1
finished
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
AC006293.1
finished
14 CTB-61M7
HSCHR19_4_CTG3_1
bK61M7
AC011501.8
finished
15 CTC-550B14
HSCHR19_4_CTG3_1
bK550B14
AC011476.8
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC012314.8 137602 198017 +
198019 245781 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC010492.9 32665 80427 +
245782 247429 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC098789.2 1118 2765 +
247430 280825 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC010518.7 1279 34674 +
280826 318579 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC008984.5 1 37754 -
318580 510057 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC008746.10 8593 200070 +
510058 525157 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC104536.2 23568 38667 +
525158 647538 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC009892.5 11628 134008 +
647539 688275 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011515.4 6348 47084 +
688276 692657 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC098784.2 1497 5878 +
692658 695663 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC006293.1 1225 4230 +
695664 696119 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 KF459842.1 1 456 +
696120 734960 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC006293.1 4687 43527 +
734961 895005 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011501.8 1174 161218 +
895006 1069186 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011476.8 12884 187064 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
15
Clone HTGS Phases
finished
15
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
71,050
Total finished length of fin clones w/ overlap
1,174,096
Total finished length of fin clones w/o overlap
1,103,046
Total overlap length of fin+unfin clones
71,050
Total finished length of fin+unfin clones w/ overlap
1,174,096
Total finished length of fin+unfin clones w/o overlap
1,103,046

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Mon, 31 Aug 2015 23:24
2 12 AC006293.1 unfinished 38,841 Mon, 31 Aug 2015 23:24

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* quick link - http://q.sanger.ac.uk/1ajiu2rr