ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_9__19 (TPF updated: 2014-09-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
HSCHR19_4_CTG3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
AC012314.8
finished
3 CTD-2337J16
HSCHR19_4_CTG3_1
bK2337J16
AC010492.9
finished
4 LLNLR-268G8
HSCHR19_4_CTG3_1
llnlrE268G8
AC098789.2
finished
5 LLNLR-260H6
HSCHR19_4_CTG3_1
llnlrE260H6
AC010518.7
finished
6 LLNLF-191E4
HSCHR19_4_CTG3_1
llnlfE191E4
AC008984.5
finished
7 CTD-2587H19
HSCHR19_4_CTG3_1
bK2587H19
AC008746.10
finished
8 LLNLR-308D7
HSCHR19_4_CTG3_1
llnlrE308D7
AC104536.2
finished
9 CTB-83J4
HSCHR19_4_CTG3_1
bK83J4
AC009892.5
finished
10 LLNLF-139A9
HSCHR19_4_CTG3_1
llnlfE139A9
AC011515.4
finished
11 LLNLR-250B1
HSCHR19_4_CTG3_1
llnlrE250B1
AC098784.2
finished
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
AC006293.1
finished
13
HSCHR19_4_CTG3_1
CONTAINED
KF459842
KF459842.1
finished
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
AC006293.1
finished
14 CTB-61M7
HSCHR19_4_CTG3_1
bK61M7
AC011501.8
finished
15 CTC-550B14
HSCHR19_4_CTG3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC012314.8 137602 198017 +
198019 245781 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC010492.9 32665 80427 +
245782 247429 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC098789.2 1118 2765 +
247430 280825 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC010518.7 1279 34674 +
280826 318579 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC008984.5 1 37754 -
318580 510057 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC008746.10 8593 200070 +
510058 525157 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC104536.2 23568 38667 +
525158 647538 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC009892.5 11628 134008 +
647539 688275 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011515.4 6348 47084 +
688276 692657 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC098784.2 1497 5878 +
692658 695663 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC006293.1 1225 4230 +
695664 696119 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 KF459842.1 1 456 +
696120 734960 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC006293.1 4687 43527 +
734961 895005 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011501.8 1174 161218 +
895006 1069186 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC011476.8 12884 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-09-20
fetch_ncbi...
humpub
 
2
HSCHR19_4_CTG3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-09-20
fetch_ncbi...
humpub
 
1 CTD-3093M3
HSCHR19_4_CTG3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
198017 / 32665
- / -
32658
0.1
Identified
2014-09-20
fetch_ncbi...
humpub
 
3 CTD-2337J16
HSCHR19_4_CTG3_1
bK2337J16
-
-
AC010492.9
finished
80427 CIT-HSP-D1 3' / 5'
80427 / 1118
- / -
1117
0.09
Identified
2014-09-20
fetch_ncbi...
humpub
 
4 LLNLR-268G8
HSCHR19_4_CTG3_1
llnlrE268G8
-
-
AC098789.2
finished
2765 LLNLR 3' / 5'
2765 / 1279
- / -
1278
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
5 LLNLR-260H6
HSCHR19_4_CTG3_1
llnlrE260H6
-
-
AC010518.7
finished
34674 LLNLR 3' / 3'
34674 / 37754
- / -
2075
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
6 LLNLF-191E4
HSCHR19_4_CTG3_1
llnlfE191E4
-
-
AC008984.5
finished
39829 LLNLF 5' / 5'
1 / 8593
- / -
8590
0.16
Identified
2014-09-20
fetch_ncbi...
humpub
 
7 CTD-2587H19
HSCHR19_4_CTG3_1
bK2587H19
-
-
AC008746.10
finished
200070 CIT-HSP-D2 3' / 5'
200070 / 23568
- / -
23567
0.07
Identified
2014-09-20
fetch_ncbi...
humpub
 
8 LLNLR-308D7
HSCHR19_4_CTG3_1
llnlrE308D7
-
-
AC104536.2
finished
38667 LLNLR 3' / 5'
38667 / 11628
- / -
11611
0.27
Identified
2014-09-20
fetch_ncbi...
humpub
 
9 CTB-83J4
HSCHR19_4_CTG3_1
bK83J4
-
-
AC009892.5
finished
134008 CIT978SK-B 3' / 5'
134008 / 6348
- / -
6342
0.3
Identified
2014-09-20
fetch_ncbi...
humpub
 
10 LLNLF-139A9
HSCHR19_4_CTG3_1
llnlfE139A9
-
-
AC011515.4
finished
47084 LLNLF 3' / 5'
47084 / 1497
- / -
1496
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
11 LLNLR-250B1
HSCHR19_4_CTG3_1
llnlrE250B1
-
-
AC098784.2
finished
5878 LLNLR 3' / 5'
5878 / 1225
- / -
1224
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
-
-
AC006293.1
finished
43527 LLNLF 3' / 5'
4230 / 1
38841 / -
456
0.22
Identified
2014-09-20
fetch_ncbi...
humpub
 
13
HSCHR19_4_CTG3_1
CONTAINED
KF459842
-
-
KF459842.1
finished
456 - 3' / 5'
456 / 4687
- / 4230
456
0.22
Identified
2014-09-20
fetch_ncbi...
humpub
 
12 LLNLF-112A2
HSCHR19_4_CTG3_1
CONTAINER
llnlfE112A2
-
-
AC006293.1
finished
43527 LLNLF 3' / 5'
43527 / 1174
- / -
1173
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
14 CTB-61M7
HSCHR19_4_CTG3_1
bK61M7
-
-
AC011501.8
finished
161218 CIT978SK-B 3' / 5'
161218 / 12884
- / -
12883
0.01
Identified
2014-09-20
fetch_ncbi...
humpub
 
15 CTC-550B14
HSCHR19_4_CTG3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
0
Total clones
15
Clone HTGS Phases
finished
15
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
71,050
Total finished length of fin clones w/ overlap
1,174,096
Total finished length of fin clones w/o overlap
1,103,046
Total overlap length of fin+unfin clones
71,050
Total finished length of fin+unfin clones w/ overlap
1,174,096
Total finished length of fin+unfin clones w/o overlap
1,103,046

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Fri, 19 Sep 2014 23:28
2 12 AC006293.1 unfinished 38,841 Fri, 19 Sep 2014 23:28

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Other links

* quick link - http://q.sanger.ac.uk/1ajiu2rr