ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__8 (TPF updated: 2014-09-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-666I19
HSCHR8_7_CTG1
bA666I19
AC126333.7
finished
2 RP4-593A12
HSCHR8_7_CTG1
dJ593A12
AF188030.5
finished
3 CTD-2336O2
HSCHR8_7_CTG1
bK2336O2
AC100810.18
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 10910 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC126333.7 116465 127374 -
10911 162239 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AF188030.5 1 151329 +
162240 234128 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC100810.18 1 71889 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-666I19
HSCHR8_7_CTG1
bA666I19
-
-
AC126333.7
finished
127374 RPCI-11.3 5' / 5'
116465 / 1
- / -
115597
1.52
Identified
2014-09-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
2 RP4-593A12
HSCHR8_7_CTG1
dJ593A12
-
-
AF188030.5
finished
151329 RPCI-4 3' / 3'
151329 / 71889
- / -
42738
0.23
Identified
2014-09-23
fetch_ncbi...
humpub
 
3 CTD-2336O2
HSCHR8_7_CTG1
bK2336O2
-
-
AC100810.18
finished
114639 CIT-HSP-D1        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
158,335
Total finished length of fin clones w/ overlap
393,342
Total finished length of fin clones w/o overlap
235,007
Total overlap length of fin+unfin clones
158,335
Total finished length of fin+unfin clones w/ overlap
393,342
Total finished length of fin+unfin clones w/o overlap
235,007

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Other links

* quick link - http://q.sanger.ac.uk/csx1buvp