ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__8 (TPF updated: 2014-10-31)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 GS1-110L19
HSCHR8_5_CTG1
bG110L19
AC005010.2
finished
2 GS1-402E12
HSCHR8_5_CTG1
bG402E12
AF181898.6
finished
3 RP11-666I19
HSCHR8_5_CTG1
bA666I19
AC126333.7
finished
  GAP (type-3) length unknown    
5 RP11-1116K10
HSCHR8_6_CTG1
bA1116K10
AC120035.6
finished
6 ABC14-1110122D7
HSCHR8_6_CTG1
f14A1110122D7
AC242019.2
finished
7 CTD-2281E23
HSCHR8_6_CTG1
bK2281E23
AC110288.10
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 34388 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC005010.2 1 34388 +
34389 295539 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AF181898.6 1 261151 +
295540 319009 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC126333.7 1 23470 -
319010 369009 4 N 50000 contig no
369010 504173 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC120035.6 1 135164 +
504174 548490 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC242019.2 1 44317 -
548491 590730 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC110288.10 60513 102752 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 GS1-110L19
HSCHR8_5_CTG1
bG110L19
-
-
AC005010.2
finished
197498 Genome Systems ReleaseI 3' / 5'
34388 / 1
- / -
160983
3.25
Identified
2014-10-31
fetch_ncbi...
humpub
Certificate submitted, not yet approved
2 GS1-402E12
HSCHR8_5_CTG1
bG402E12
-
-
AF181898.6
finished
261151 Genome Systems ReleaseI 3' / 3'
261151 / 23470
- / -
103113
1.63
Identified
2014-10-31
fetch_ncbi...
humpub
Certificate submitted, not yet approved
3 RP11-666I19
HSCHR8_5_CTG1
bA666I19
-
-
AC126333.7
finished
127374 RPCI-11.3        
  GAP (type-3) length unknown                  
5 RP11-1116K10
HSCHR8_6_CTG1
bA1116K10
-
-
AC120035.6
finished
151045 RPCI-11.4 3' / 3'
135164 / 44317
- / -
15877
0.49
Identified
2014-10-31
fetch_ncbi...
humpub
 
6 ABC14-1110122D7
HSCHR8_6_CTG1
f14A1110122D7
-
-
AC242019.2
finished
44317 ABC14 5' / 5'
1 / 60513
- / 13780
43953
8.97
Identified
2014-10-31
fetch_ncbi...
humpub
Certificate submitted, not yet approved
7 CTD-2281E23
HSCHR8_6_CTG1
bK2281E23
-
-
AC110288.10
finished
102752 CIT-HSP-D1        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
323,926
Total finished length of fin clones w/ overlap
884,137
Total finished length of fin clones w/o overlap
560,211
Total overlap length of fin+unfin clones
323,926
Total finished length of fin+unfin clones w/ overlap
884,137
Total finished length of fin+unfin clones w/o overlap
560,211

Dovetails

# rank accession status length date
1 7 AC110288.10 unfinished 13,780 Thu, 30 Oct 2014 23:55

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