ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__8 (TPF updated: 2015-07-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 GS1-110L19
HSCHR8_5_CTG1
bG110L19
AC005010.2
finished
2 GS1-402E12
HSCHR8_5_CTG1
bG402E12
AF181898.6
finished
3 RP11-666I19
HSCHR8_5_CTG1
bA666I19
AC126333.7
finished
  GAP (type-3) length unknown    
5 RP11-1116K10
HSCHR8_6_CTG1
bA1116K10
AC120035.6
finished
6 ABC14-1110122D7
HSCHR8_6_CTG1
f14A1110122D7
AC242019.2
finished
7 CTD-2281E23
HSCHR8_6_CTG1
bK2281E23
AC110288.10
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 34388 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC005010.2 1 34388 +
34389 295539 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AF181898.6 1 261151 +
295540 319009 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC126333.7 1 23470 -
319010 369009 4 N 50000 contig no
369010 504173 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC120035.6 1 135164 +
504174 548490 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC242019.2 1 44317 -
548491 590730 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC110288.10 60513 102752 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
323,926
Total finished length of fin clones w/ overlap
884,137
Total finished length of fin clones w/o overlap
560,211
Total overlap length of fin+unfin clones
323,926
Total finished length of fin+unfin clones w/ overlap
884,137
Total finished length of fin+unfin clones w/o overlap
560,211

Dovetails

# rank accession status length date
1 7 AC110288.10 unfinished 13,780 Fri, 03 Jul 2015 23:54

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