ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__8 (TPF updated: 2014-07-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-89M16
HSCHR8_1_CTG7
bA89M16
AC015807.5
finished
2 RP11-18K20
HSCHR8_1_CTG7
bA18K20
AC011198.2
finished
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
AC068570.23
finished
4
HSCHR8_1_CTG7
CONTAINED
KF458844
KF458844.1
finished
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
AC068570.23
finished
  GAP (type-3) length unknown    
6
HSCHR8_1_CTG1
CONTAINER
AF067845
AF067845.1
finished
7
HSCHR8_1_CTG1
CONTAINED
KC877200
KC877200.1
finished
6
HSCHR8_1_CTG1
CONTAINER
AF067845
AF067845.1
finished
8 RP11-115H22
HSCHR8_1_CTG1
bA115H22
AC131901.3
finished
9 GS1-110L19
HSCHR8_1_CTG1
bG110L19
AC005010.2
finished
  GAP (type-3) length unknown    
11 RP11-555E9
HSCHR8_2_CTG1
bA555E9
AC026950.16
finished
12 ABC9-43944400D2
HSCHR8_2_CTG1
f9A43944400D2
AC209538.4
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
14
HSCHR8_2_CTG1
CONTAINED
KC877190
KC877190.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
15
HSCHR8_2_CTG1
CONTAINED
KC877191
KC877191.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
16
HSCHR8_2_CTG1
CONTAINED
KC877196
KC877196.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
17
HSCHR8_2_CTG1
CONTAINED
KC877185
KC877185.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
18
HSCHR8_2_CTG1
CONTAINED
KC877183
KC877183.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
  GAP (type-3) length unknown    
20 SCb-295J18
HSCHR8_3_CTG1
b295J18
AF252830.5
finished
21 RP11-1118M6
HSCHR8_3_CTG1
bA1118M6
AC134684.5
finished
  GAP (type-3) length unknown    
23 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
AC025674.10
finished
24 ABC9-44022600E10
HSCHR8_1_CTG6
CONTAINED
f9A44022600E10
AC208161.2
finished
23 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
AC025674.10
finished
  GAP (type-3) length unknown    
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
27
HSCHR8_2_CTG7
CONTAINED
KF495788
KF495788.1
finished
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
28
HSCHR8_2_CTG7
CONTAINED
KF458883
KF458883.1
finished
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
29 ABC12-46977100J2
HSCHR8_2_CTG7
CONTAINED
f12A46977100J2
AC207869.4
finished
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
30
HSCHR8_2_CTG7
CONTAINED
KF458886
KF458886.1
finished
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
  GAP (type-3) length unknown    
32 RP11-661A12
HSCHR8_3_CTG7
bA661A12
AC067930.7
finished
33 ABC12-46354500L4
HSCHR8_3_CTG7
f12A46354500L4
AC243411.1
finished
34 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
AC105219.6
finished
35
HSCHR8_3_CTG7
CONTAINED
KF458881
KF458881.1
finished
34 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
AC105219.6
finished
  GAP (type-3) length unknown    
37 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
AC083982.13
finished
38 ABC10-43609100C20
HSCHR8_4_CTG7
CONTAINED
f10A43609100C20
AC236721.3
finished
37 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
AC083982.13
finished
  GAP (type-3) length unknown    
40 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
AC100797.4
finished
41 ABC13-47676200G18
HSCHR8_4_CTG1
CONTAINED
f13A47676200G18
AC221020.3
finished
40 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
AC100797.4
finished
  GAP (type-3) length unknown    
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
44
HSCHR8_5_CTG7
CONTAINED
KF510306
KF510306.1
finished
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
45 ABC9-43895800H12
HSCHR8_5_CTG7
CONTAINED
f9A43895800H12
AC241442.1
finished
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
  GAP (type-3) length unknown    
47 ABC9-44003900F15
HSCHR8_6_CTG7
f9A44003900F15
AC208147.4
finished
48 800816B5
HSCHR8_6_CTG7
800816B5
AC144407.2
finished
  GAP (type-3) length unknown    
50 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
AC019257.3
finished
51
HSCHR8_8_CTG1
CONTAINED
KF458656
KF458656.1
finished
50 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
AC019257.3
finished
52 RP11-1049H7
HSCHR8_8_CTG1
bA1049H7
AC125453.6
finished
53 RP11-715M14
HSCHR8_8_CTG1
bA715M14
AC022257.20
finished
54 RP11-140A18
HSCHR8_8_CTG1
bA140A18
AC090141.9
finished
55 ABC7-477422K1
HSCHR8_8_CTG1
f7A477422K1
AC242829.2
finished
56 ABC27-378K6
HSCHR8_8_CTG1
f27A378K6
AC240838.2
finished
57 CTD-2517C5
HSCHR8_8_CTG1
bK2517C5
AC133633.5
finished
58 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
AC104021.5
finished
59
HSCHR8_8_CTG1
CONTAINED
KF458663
KF458663.1
finished
58 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
AC104021.5
finished
60 CH17-61M15
HSCHR8_8_CTG1
bMO61M15
AC246817.2
finished
  GAP (type-3) length unknown    
62 RP11-479P21
HSCHR8_9_CTG1
bA479P21
AC105091.3
finished
63 CH17-462D8
HSCHR8_9_CTG1
bMO462D8
AC245594.2
finished
64 CH17-247K4
HSCHR8_9_CTG1
bMO247K4
AC245062.2
finished
65 CH17-31O1
HSCHR8_9_CTG1
bMO31O1
AC244257.3
finished
66 KB-1582A10
HSCHR8_9_CTG1
KB1582A10
AP005902.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 83133 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC015807.5 68216 151348 -
83134 274348 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC011198.2 10 191224 +
274349 304480 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC068570.23 46173 76304 +
304481 304866 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF458844.1 1 386 +
304867 376959 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC068570.23 76691 148783 +
376960 426959 6 N 50000 contig no
426960 457894 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AF067845.1 1 30935 +
457895 458381 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 KC877200.1 1 487 +
458382 515691 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AF067845.1 31423 88732 +
515692 549603 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC131901.3 1 33912 +
549604 719395 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC005010.2 27707 197498 +
719396 769395 12 N 50000 contig no
769396 908411 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC026950.16 21421 160436 -
908412 944923 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC209538.4 1 36512 +
944924 992069 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 23053 70198 +
992070 992629 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 KC877190.1 1 560 +
992630 995340 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 70759 73469 +
995341 995887 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 KC877191.1 1 547 -
995888 1038245 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 74017 116374 +
1038246 1038809 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 KC877196.1 1 564 +
1038810 1061521 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 116939 139650 +
1061522 1062081 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 KC877185.1 1 560 -
1062082 1066708 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 140211 144837 +
1066709 1067256 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 KC877183.1 1 548 -
1067257 1084230 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 25 AC129915.6 145386 162359 +
1084231 1134230 26 N 50000 contig no
1134231 1306790 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AF252830.5 1 172560 -
1306791 1434460 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AC134684.5 47533 175202 +
1434461 1484460 29 N 50000 contig no
1484461 1520162 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC025674.10 1 35702 +
1520163 1559728 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC208161.2 1 39566 +
1559729 1648675 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC025674.10 63505 152451 +
1648676 1698675 33 N 50000 contig no
1698676 1716034 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AF186192.5 1 17359 +
1716035 1716376 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 KF495788.1 1 342 +
1716377 1719914 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AF186192.5 17702 21239 +
1719915 1720271 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 KF458883.1 1 357 -
1720272 1749846 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AF186192.5 21597 51171 +
1749847 1786137 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AC207869.4 1 36291 -
1786138 1835208 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AF186192.5 84231 133301 +
1835209 1835599 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 KF458886.1 1 391 +
1835600 1847154 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 42 AF186192.5 133693 145247 +
1847155 1897154 43 N 50000 contig no
1897155 2047121 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 48 AC067930.7 1 149967 +
2047122 2087634 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 48 AC243411.1 1 40513 +
2087635 2230859 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 48 AC105219.6 20262 163486 -
2230860 2231198 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 48 KF458881.1 1 339 -
2231199 2251120 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 48 AC105219.6 1 19922 -
2251121 2301120 49 N 50000 contig no
2301121 2362613 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 AC083982.13 1 61493 +
2362614 2402719 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 AC236721.3 1 40106 -
2402720 2480327 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 AC083982.13 96303 173910 +
2480328 2530327 53 N 50000 contig no
2530328 2661341 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 AC100797.4 1 131014 +
2661342 2697533 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 AC221020.3 1 36192 +
2697534 2733041 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 AC100797.4 164833 200340 +
2733042 2783041 57 N 50000 contig no
2783042 2825905 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 62 AC100803.11 1 42864 +
2825906 2826119 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 62 KF510306.1 1 214 +
2826120 2862120 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 62 AC100803.11 43080 79080 +
2862121 2899616 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 62 AC241442.1 22 37517 +
2899617 2941360 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 62 AC100803.11 110675 152418 +
2941361 2991360 63 N 50000 contig no
2991361 3026947 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 65 AC208147.4 1 35587 +
3026948 3028000 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 65 AC144407.2 33852 34904 +
3028001 3078000 66 N 50000 contig no
3078001 3172705 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC019257.3 125497 220201 -
3172706 3173091 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 KF458656.1 1 386 -
3173092 3298201 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC019257.3 1 125110 -
3298202 3478398 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC125453.6 1 180197 -
3478399 3625046 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC022257.20 1 146648 -
3625047 3702170 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC090141.9 78931 156054 +
3702171 3711341 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC242829.2 28735 37905 +
3711342 3745949 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC240838.2 1 34608 -
3745950 3789867 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC133633.5 50278 94195 +
3789868 3870722 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC104021.5 36059 116913 -
3870723 3871101 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 KF458663.1 1 379 +
3871102 3906780 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC104021.5 1 35679 -
3906781 4083108 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 79 AC246817.2 31510 207837 +
4083109 4133108 80 N 50000 contig no
4133109 4233120 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 85 AC105091.3 1 100012 +
4233121 4426955 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 85 AC245594.2 1 193835 -
4426956 4526211 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 85 AC245062.2 1 99256 -
4526212 4678897 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 85 AC244257.3 1 152686 -
4678898 4788839 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 85 AP005902.2 39636 149577 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-89M16
HSCHR8_1_CTG7
bA89M16
-
-
AC015807.5
finished
151348 RPCI-11.1 5' / 5'
68216 / 10
- / 9
68215
0
Identified
2014-01-21
fetch_ncbi...
humpub
 
2 RP11-18K20
HSCHR8_1_CTG7
bA18K20
-
-
AC011198.2
finished
191233 RPCI-11.1 3' / 5'
191224 / 46173
9 / -
46172
0
Identified
2014-01-21
fetch_ncbi...
humpub
 
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
-
-
AC068570.23
finished
148783 RPCI-11.1 3' / 5'
76304 / 1
72093 / -
386
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
4
HSCHR8_1_CTG7
CONTAINED
KF458844
-
-
KF458844.1
finished
386 - 3' / 5'
386 / 76691
- / 76304
386
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
-
-
AC068570.23
finished
148783 RPCI-11.1        
  GAP (type-3) length unknown                  
6
HSCHR8_1_CTG1
CONTAINER
AF067845
-
-
AF067845.1
finished
108932 - 3' / 5'
30935 / 1
77510 / -
487
0.21
Identified
2014-07-23
fetch_ncbi...
humpub
 
7
HSCHR8_1_CTG1
CONTAINED
KC877200
-
-
KC877200.1
finished
487 - 3' / 5'
487 / 31423
- / 30935
487
0.21
Identified
2014-07-23
fetch_ncbi...
humpub
 
6
HSCHR8_1_CTG1
CONTAINER
AF067845
-
-
AF067845.1
finished
108932 - 3' / 5'
88732 / 1
- / -
19303
8.06
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
8 RP11-115H22
HSCHR8_1_CTG1
bA115H22
-
-
AC131901.3
finished
33912 RPCI-11.1 3' / 5'
33912 / 27707
- / -
14395
93.74
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
9 GS1-110L19
HSCHR8_1_CTG1
bG110L19
-
-
AC005010.2
finished
197498 Genome Systems ReleaseI        
  GAP (type-3) length unknown                  
11 RP11-555E9
HSCHR8_2_CTG1
bA555E9
-
-
AC026950.16
finished
160436 RPCI-11.2 5' / 5'
21421 / 1
- / -
21367
0.42
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
12 ABC9-43944400D2
HSCHR8_2_CTG1
f9A43944400D2
-
-
AC209538.4
finished
36512 ABC9 3' / 5'
36512 / 23053
- / -
23036
13.49
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2 3' / 5'
70198 / 1
91601 / -
560
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
14
HSCHR8_2_CTG1
CONTAINED
KC877190
-
-
KC877190.1
finished
560 - 3' / 5'
560 / 70759
- / 70198
560
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2 3' / 3'
73469 / 547
88343 / -
547
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
15
HSCHR8_2_CTG1
CONTAINED
KC877191
-
-
KC877191.1
finished
547 - 5' / 5'
1 / 74017
- / 73469
547
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2 3' / 5'
116374 / 1
45421 / -
564
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
16
HSCHR8_2_CTG1
CONTAINED
KC877196
-
-
KC877196.1
finished
564 - 3' / 5'
564 / 116939
- / 116374
564
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2 3' / 3'
139650 / 560
22149 / -
560
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
17
HSCHR8_2_CTG1
CONTAINED
KC877185
-
-
KC877185.1
finished
560 - 5' / 5'
1 / 140211
- / 139650
560
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2 3' / 3'
144837 / 548
16974 / -
548
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
18
HSCHR8_2_CTG1
CONTAINED
KC877183
-
-
KC877183.1
finished
548 - 5' / 5'
1 / 145386
- / 144837
548
0.18
Identified
2014-07-23
fetch_ncbi...
humpub
 
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
-
-
AC129915.6
finished
162359 CIT-HSP-D2        
  GAP (type-3) length unknown                  
20 SCb-295J18
HSCHR8_3_CTG1
b295J18
-
-
AF252830.5
finished
172560 SCb 5' / 5'
1 / 47533
- / -
47512
0.44
Identified
2014-07-23
fetch_ncbi...
humpub
 
21 RP11-1118M6
HSCHR8_3_CTG1
bA1118M6
-
-
AC134684.5
finished
175202 RPCI-11.4        
  GAP (type-3) length unknown                  
23 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
-
-
AC025674.10
finished
152451 RPCI-11.2 3' / 5'
35702 / 1
88947 / -
39566
42.49
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
24 ABC9-44022600E10
HSCHR8_1_CTG6
CONTAINED
f9A44022600E10
-
-
AC208161.2
finished
39566 ABC9 3' / 5'
39566 / 63505
- / 35702
39566
42.49
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
-
-
AC025674.10
finished
152451 RPCI-11.2        
  GAP (type-3) length unknown                  
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
-
-
AF186192.5
finished
145247 - 3' / 5'
17359 / 1
127546 / -
342
0.58
Identified
2014-07-23
fetch_ncbi...
humpub
 
27
HSCHR8_2_CTG7
CONTAINED
KF495788
-
-
KF495788.1
finished
342 - 3' / 5'
342 / 17702
- / 17359
342
0.58
Identified
2014-07-23
fetch_ncbi...
humpub
 
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
-
-
AF186192.5
finished
145247 - 3' / 3'
21239 / 357
123651 / -
357
0.28
Identified
2014-07-23
fetch_ncbi...
humpub
 
28
HSCHR8_2_CTG7
CONTAINED
KF458883
-
-
KF458883.1
finished
357 - 5' / 5'
1 / 21597
- / 21239
357
0.28
Identified
2014-07-23
fetch_ncbi...
humpub
 
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
-
-
AF186192.5
finished
145247 - 3' / 3'
51171 / 36291
61017 / -
36291
10.24
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
29 ABC12-46977100J2
HSCHR8_2_CTG7
CONTAINED
f12A46977100J2
-
-
AC207869.4
finished
36291 ABC12 5' / 5'
1 / 84231
- / 51171
36291
10.24
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
-
-
AF186192.5
finished
145247 - 3' / 5'
133301 / 1
11555 / -
391
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
30
HSCHR8_2_CTG7
CONTAINED
KF458886
-
-
KF458886.1
finished
391 - 3' / 5'
391 / 133693
- / 133301
391
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
26 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
-
-
AF186192.5
finished
145247 -        
  GAP (type-3) length unknown                  
32 RP11-661A12
HSCHR8_3_CTG7
bA661A12
-
-
AC067930.7
finished
174906 RPCI-11.3 3' / 5'
149967 / 1
- / -
10728
100.2
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
33 ABC12-46354500L4
HSCHR8_3_CTG7
f12A46354500L4
-
-
AC243411.1
finished
40513 ABC12 3' / 3'
40513 / 163486
- / -
14313
11.63
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
34 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
-
-
AC105219.6
finished
177816 RPCI-11.2 5' / 3'
20262 / 339
19922 / -
339
0.29
Identified
2014-07-23
fetch_ncbi...
humpub
 
35
HSCHR8_3_CTG7
CONTAINED
KF458881
-
-
KF458881.1
finished
339 - 5' / 3'
1 / 19922
- / 157555
339
0.29
Identified
2014-07-23
fetch_ncbi...
humpub
 
34 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
-
-
AC105219.6
finished
177816 RPCI-11.2        
  GAP (type-3) length unknown                  
37 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
-
-
AC083982.13
finished
173910 RPCI-11.2 3' / 3'
61493 / 40106
77608 / -
40106
17
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
38 ABC10-43609100C20
HSCHR8_4_CTG7
CONTAINED
f10A43609100C20
-
-
AC236721.3
finished
40106 ABC10 5' / 5'
1 / 96303
- / 61493
40106
17
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
37 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
-
-
AC083982.13
finished
173910 RPCI-11.2        
  GAP (type-3) length unknown                  
40 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
-
-
AC100797.4
finished
200340 RPCI-11.1 3' / 5'
131014 / 1
35508 / -
36272
7.53
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
41 ABC13-47676200G18
HSCHR8_4_CTG1
CONTAINED
f13A47676200G18
-
-
AC221020.3
finished
36272 ABC13 3' / 5'
36192 / 164833
80 / 131014
36272
7.53
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
40 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
-
-
AC100797.4
finished
200340 RPCI-11.1        
  GAP (type-3) length unknown                  
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
-
-
AC100803.11
finished
152418 CIT-HSP-D2 3' / 5'
42864 / 1
109339 / -
214
0.47
Identified
2014-07-23
fetch_ncbi...
humpub
 
44
HSCHR8_5_CTG7
CONTAINED
KF510306
-
-
KF510306.1
finished
214 - 3' / 5'
214 / 43080
- / 42864
214
0.47
Identified
2014-07-23
fetch_ncbi...
humpub
 
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
-
-
AC100803.11
finished
152418 CIT-HSP-D2 3' / 5'
79080 / 22
41744 / 21
37538
18.86
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
45 ABC9-43895800H12
HSCHR8_5_CTG7
CONTAINED
f9A43895800H12
-
-
AC241442.1
finished
37538 ABC9 3' / 5'
37517 / 110675
21 / 79080
37538
18.86
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
43 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
-
-
AC100803.11
finished
152418 CIT-HSP-D2        
  GAP (type-3) length unknown                  
47 ABC9-44003900F15
HSCHR8_6_CTG7
f9A44003900F15
-
-
AC208147.4
finished
35590 ABC9 3' / 5'
35587 / 33852
3 / 1465
32374
10.11
Identified
2014-07-22
agp2oracle
humpub
Certificate submitted, not yet approved
48 800816B5
HSCHR8_6_CTG7
800816B5
-
-
AC144407.2
finished
34904 -        
  GAP (type-3) length unknown                  
50 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
-
-
AC019257.3
finished
220201 RPCI-11.2 5' / 3'
125497 / 386
125110 / -
386
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
51
HSCHR8_8_CTG1
CONTAINED
KF458656
-
-
KF458656.1
finished
386 - 5' / 3'
1 / 125110
- / 94705
386
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
50 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
-
-
AC019257.3
finished
220201 RPCI-11.2 5' / 3'
1 / 180197
- / -
6387
0.51
Identified
2014-07-23
fetch_ncbi...
humpub
 
52 RP11-1049H7
HSCHR8_8_CTG1
bA1049H7
-
-
AC125453.6
finished
186608 RPCI-11.4 5' / 3'
1 / 146648
- / -
27980
0
Identified
2014-07-23
fetch_ncbi...
humpub
 
53 RP11-715M14
HSCHR8_8_CTG1
bA715M14
-
-
AC022257.20
finished
174628 RPCI-11.3 5' / 5'
1 / 78931
- / -
78930
0
Identified
2014-07-23
fetch_ncbi...
humpub
 
54 RP11-140A18
HSCHR8_8_CTG1
bA140A18
-
-
AC090141.9
finished
156054 RPCI-11.1 3' / 5'
156054 / 28735
- / -
28733
0.25
Identified
2014-07-23
fetch_ncbi...
humpub
 
55 ABC7-477422K1
HSCHR8_8_CTG1
f7A477422K1
-
-
AC242829.2
finished
37905 ABC7 3' / 3'
37905 / 34608
- / -
4890
0.47
Identified
2014-07-23
fetch_ncbi...
humpub
 
56 ABC27-378K6
HSCHR8_8_CTG1
f27A378K6
-
-
AC240838.2
finished
39505 ABC27 5' / 5'
1 / 50278
- / 41710
8550
6.43
Identified
2014-07-23
fetch_ncbi...
humpub
Certificate approved
57 CTD-2517C5
HSCHR8_8_CTG1
bK2517C5
-
-
AC133633.5
finished
94195 CIT-HSP-D2 3' / 3'
94195 / 116913
- / -
19084
0.28
Identified
2014-07-23
fetch_ncbi...
humpub
 
58 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
-
-
AC104021.5
finished
135998 RPCI-11.2 5' / 5'
36059 / 1
35679 / -
379
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
59
HSCHR8_8_CTG1
CONTAINED
KF458663
-
-
KF458663.1
finished
379 - 3' / 3'
379 / 35679
- / 99940
379
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
58 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
-
-
AC104021.5
finished
135998 RPCI-11.2 5' / 5'
1 / 31510
- / -
31494
1.54
Identified
2014-07-23
fetch_ncbi...
humpub
 
60 CH17-61M15
HSCHR8_8_CTG1
bMO61M15
-
-
AC246817.2
finished
207837 CHORI-17        
  GAP (type-3) length unknown                  
62 RP11-479P21
HSCHR8_9_CTG1
bA479P21
-
-
AC105091.3
finished
173888 RPCI-11.2 3' / 3'
100012 / 193835
- / -
73863
0.24
Identified
2014-07-23
fetch_ncbi...
humpub
 
63 CH17-462D8
HSCHR8_9_CTG1
bMO462D8
-
-
AC245594.2
finished
193835 CHORI-17 5' / 3'
1 / 99256
- / -
119933
0
Identified
2014-07-23
fetch_ncbi...
humpub
 
64 CH17-247K4
HSCHR8_9_CTG1
bMO247K4
-
-
AC245062.2
finished
219189 CHORI-17 5' / 3'
1 / 152686
- / -
49180
0
Identified
2014-07-23
fetch_ncbi...
humpub
 
65 CH17-31O1
HSCHR8_9_CTG1
bMO31O1
-
-
AC244257.3
finished
201866 CHORI-17 5' / 5'
1 / 39636
- / -
39615
0.26
Identified
2014-07-23
fetch_ncbi...
humpub
 
66 KB-1582A10
HSCHR8_9_CTG1
KB1582A10
-
-
AP005902.2
finished
149577 KB        

Statistics

Clone Summary

Number of gaps
12
Gap types
type-3
12
Total clones
54
Clone HTGS Phases
finished
54
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
828,212
Total finished length of fin clones w/ overlap
5,213,989
Total finished length of fin clones w/o overlap
4,385,777
Total overlap length of fin+unfin clones
828,212
Total finished length of fin+unfin clones w/ overlap
5,213,989
Total finished length of fin+unfin clones w/o overlap
4,385,777

Dovetails

# rank accession status length date
1 3 AC068570.23 unfinished 72,093 Thu, 24 Jul 2014 00:09
2 6 AF067845.1 unfinished 77,510 Thu, 24 Jul 2014 00:09
3 13 AC129915.6 unfinished 91,601 Thu, 24 Jul 2014 00:09
4 23 AC025674.10 unfinished 88,947 Thu, 24 Jul 2014 00:09
5 26 AF186192.5 unfinished 127,546 Thu, 24 Jul 2014 00:09
6 34 AC105219.6 unfinished 19,922 Thu, 24 Jul 2014 00:09
7 37 AC083982.13 unfinished 77,608 Thu, 24 Jul 2014 00:09
8 40 AC100797.4 unfinished 35,508 Thu, 24 Jul 2014 00:09
9 43 AC100803.11 unfinished 109,339 Thu, 24 Jul 2014 00:09
10 48 AC144407.2 unfinished 1,053 Thu, 24 Jul 2014 00:09
11 50 AC019257.3 unfinished 125,110 Thu, 24 Jul 2014 00:09
12 57 AC133633.5 unfinished 41,710 Thu, 24 Jul 2014 00:09
13 58 AC104021.5 unfinished 35,679 Thu, 24 Jul 2014 00:09

Search

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Other links

* quick link - http://q.sanger.ac.uk/pbk9n6e1