ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__8 (TPF updated: 2017-12-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-89M16
HSCHR8_1_CTG7
bA89M16
AC015807.5
finished
2 RP11-18K20
HSCHR8_1_CTG7
bA18K20
AC099816.2
finished
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
AC068570.23
finished
4
HSCHR8_1_CTG7
CONTAINED
KF458844
KF458844.1
finished
3 RP11-126N1
HSCHR8_1_CTG7
CONTAINER
bA126N1
AC068570.23
finished
  GAP (type-3) length unknown    
6
HSCHR8_1_CTG1
CONTAINER
AF067845
AF067845.1
finished
7
HSCHR8_1_CTG1
CONTAINED
KC877200
KC877200.1
finished
6
HSCHR8_1_CTG1
CONTAINER
AF067845
AF067845.1
finished
8 RP11-115H22
HSCHR8_1_CTG1
bA115H22
AC131901.3
finished
9 GS1-110L19
HSCHR8_1_CTG1
bG110L19
AC005010.2
finished
  GAP (type-3) length unknown    
11 RP11-555E9
HSCHR8_2_CTG1
bA555E9
AC026950.16
finished
12 ABC9-43944400D2
HSCHR8_2_CTG1
f9A43944400D2
AC209538.4
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
14
HSCHR8_2_CTG1
CONTAINED
KC877190
KC877190.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
15
HSCHR8_2_CTG1
CONTAINED
KC877191
KC877191.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
16
HSCHR8_2_CTG1
CONTAINED
KC877196
KC877196.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
17
HSCHR8_2_CTG1
CONTAINED
KC877185
KC877185.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
18
HSCHR8_2_CTG1
CONTAINED
KC877183
KC877183.1
finished
13 CTD-3212A4
HSCHR8_2_CTG1
CONTAINER
bK3212A4
AC129915.6
finished
  GAP (type-3) length unknown    
20 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
AC025674.10
finished
21 ABC9-44022600E10
HSCHR8_1_CTG6
CONTAINED
f9A44022600E10
AC208161.2
finished
20 RP11-513O17
HSCHR8_1_CTG6
CONTAINER
bA513O17
AC025674.10
finished
  GAP (type-3) length unknown    
23 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
24
HSCHR8_2_CTG7
CONTAINED
KF495788
KF495788.1
finished
23 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
25
HSCHR8_2_CTG7
CONTAINED
KF458883
KF458883.1
finished
23 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
26 ABC12-46977100J2
HSCHR8_2_CTG7
CONTAINED
f12A46977100J2
AC207869.4
finished
23 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
27
HSCHR8_2_CTG7
CONTAINED
KF458886
KF458886.1
finished
23 P7B3
HSCHR8_2_CTG7
CONTAINER
P7B3
AF186192.5
finished
  GAP (type-3) length unknown    
29 RP11-661A12
HSCHR8_3_CTG7
bA661A12
AC067930.7
finished
30 ABC12-46354500L4
HSCHR8_3_CTG7
f12A46354500L4
AC243411.1
finished
31 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
AC105219.6
finished
32
HSCHR8_3_CTG7
CONTAINED
KF458881
KF458881.1
finished
31 RP11-429J17
HSCHR8_3_CTG7
CONTAINER
bA429J17
AC105219.6
finished
  GAP (type-3) length unknown    
34 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
AC083982.13
finished
35 ABC10-43609100C20
HSCHR8_4_CTG7
CONTAINED
f10A43609100C20
AC236721.3
finished
34 RP11-520P18
HSCHR8_4_CTG7
CONTAINER
bA520P18
AC083982.13
finished
  GAP (type-3) length unknown    
37 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
AC100797.4
finished
38 ABC13-47676200G18
HSCHR8_4_CTG1
CONTAINED
f13A47676200G18
AC221020.3
finished
37 RP11-43A14
HSCHR8_4_CTG1
CONTAINER
bA43A14
AC100797.4
finished
  GAP (type-3) length unknown    
40 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
41
HSCHR8_5_CTG7
CONTAINED
KF510306
KF510306.1
finished
40 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
42 ABC9-43895800H12
HSCHR8_5_CTG7
CONTAINED
f9A43895800H12
AC241442.1
finished
40 CTD-3064M3
HSCHR8_5_CTG7
CONTAINER
bK3064M3
AC100803.11
finished
  GAP (type-3) length unknown    
44 ABC9-44003900F15
HSCHR8_6_CTG7
f9A44003900F15
AC208147.4
finished
45 800816B5
HSCHR8_6_CTG7
800816B5
AC144407.2
finished
  GAP (type-3) length unknown    
47 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
AC019257.3
finished
48
HSCHR8_8_CTG1
CONTAINED
KF458656
KF458656.1
finished
47 RP11-439C15
HSCHR8_8_CTG1
CONTAINER
bA439C15
AC019257.3
finished
49 RP11-1049H7
HSCHR8_8_CTG1
bA1049H7
AC125453.6
finished
50 RP11-715M14
HSCHR8_8_CTG1
bA715M14
AC022257.20
finished
51 RP11-140A18
HSCHR8_8_CTG1
bA140A18
AC090141.9
finished
52 ABC7-477422K1
HSCHR8_8_CTG1
f7A477422K1
AC242829.2
finished
53 ABC27-378K6
HSCHR8_8_CTG1
f27A378K6
AC240838.2
finished
54 CTD-2517C5
HSCHR8_8_CTG1
bK2517C5
AC133633.5
finished
55 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
AC104021.5
finished
56
HSCHR8_8_CTG1
CONTAINED
KF458663
KF458663.1
finished
55 RP11-378A12
HSCHR8_8_CTG1
CONTAINER
bA378A12
AC104021.5
finished
57 CH17-61M15
HSCHR8_8_CTG1
bMO61M15
AC246817.2
finished
  GAP (type-3) length unknown    
59 RP11-479P21
HSCHR8_9_CTG1
bA479P21
AC105091.3
finished
60 CH17-462D8
HSCHR8_9_CTG1
bMO462D8
AC245594.2
finished
61 CH17-247K4
HSCHR8_9_CTG1
bMO247K4
AC245062.2
finished
62 CH17-31O1
HSCHR8_9_CTG1
bMO31O1
AC244257.3
finished
63 KB-1582A10
HSCHR8_9_CTG1
KB1582A10
AP005902.2
finished
  GAP (type-3) length unknown    
65 RP11-274M4
HSCHR8_7_CTG7
CONTAINER
bA274M4
AC022849.5
finished
66 WI2-1526M3
HSCHR8_7_CTG7
CONTAINED
fW1526M3
AC196515.1
finished
65 RP11-274M4
HSCHR8_7_CTG7
CONTAINER
bA274M4
AC022849.5
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 151348 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC015807.5 1 151348 +
151349 156348 2 N 5000 No overlap in database    
156349 307808 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC099816.2 1 151460 +
307809 312808 4 N 5000 No overlap in database    
312809 389112 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC068570.23 1 76304 +
389113 389498 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 KF458844.1 1 386 +
389499 461591 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC068570.23 76691 148783 +
461592 511591 8 N 50000 contig no
511592 542526 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AF067845.1 1 30935 +
542527 543013 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 KC877200.1 1 487 +
543014 600323 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AF067845.1 31423 88732 +
600324 634235 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AC131901.3 1 33912 +
634236 804027 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 13 AC005010.2 27707 197498 +
804028 854027 14 N 50000 contig no
854028 993043 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC026950.16 21421 160436 -
993044 1029555 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC209538.4 1 36512 +
1029556 1076701 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 23053 70198 +
1076702 1077261 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 KC877190.1 1 560 +
1077262 1079972 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 70759 73469 +
1079973 1080519 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 KC877191.1 1 547 -
1080520 1122877 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 74017 116374 +
1122878 1123441 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 KC877196.1 1 564 +
1123442 1146153 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 116939 139650 +
1146154 1146713 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 KC877185.1 1 560 -
1146714 1151340 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 140211 144837 +
1151341 1151888 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 KC877183.1 1 548 -
1151889 1168862 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 27 AC129915.6 145386 162359 +
1168863 1218862 28 N 50000 contig no
1218863 1254564 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC025674.10 1 35702 +
1254565 1294130 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC208161.2 1 39566 +
1294131 1383077 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC025674.10 63505 152451 +
1383078 1433077 32 N 50000 contig no
1433078 1450436 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AF186192.5 1 17359 +
1450437 1450778 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 KF495788.1 1 342 +
1450779 1454316 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AF186192.5 17702 21239 +
1454317 1454673 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 KF458883.1 1 357 -
1454674 1484248 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AF186192.5 21597 51171 +
1484249 1520539 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AC207869.4 1 36291 -
1520540 1569610 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AF186192.5 84231 133301 +
1569611 1570001 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 KF458886.1 1 391 +
1570002 1581556 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 41 AF186192.5 133693 145247 +
1581557 1631556 42 N 50000 contig no
1631557 1781523 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC067930.7 1 149967 +
1781524 1822036 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC243411.1 1 40513 +
1822037 1965261 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC105219.6 20262 163486 -
1965262 1965600 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 KF458881.1 1 339 -
1965601 1985522 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC105219.6 1 19922 -
1985523 2035522 48 N 50000 contig no
2035523 2097015 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 AC083982.13 1 61493 +
2097016 2137121 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 AC236721.3 1 40106 -
2137122 2214729 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 AC083982.13 96303 173910 +
2214730 2264729 52 N 50000 contig no
2264730 2395743 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 AC100797.4 1 131014 +
2395744 2431935 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 AC221020.3 1 36192 +
2431936 2467443 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 AC100797.4 164833 200340 +
2467444 2517443 56 N 50000 contig no
2517444 2560307 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 61 AC100803.11 1 42864 +
2560308 2560521 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 61 KF510306.1 1 214 +
2560522 2596522 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 61 AC100803.11 43080 79080 +
2596523 2634018 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 61 AC241442.1 22 37517 +
2634019 2675762 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 61 AC100803.11 110675 152418 +
2675763 2725762 62 N 50000 contig no
2725763 2761349 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 AC208147.4 1 35587 +
2761350 2762402 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 AC144407.2 33852 34904 +
2762403 2812402 65 N 50000 contig no
2812403 2907107 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC019257.3 125497 220201 -
2907108 2907493 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 KF458656.1 1 386 -
2907494 3032603 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC019257.3 1 125110 -
3032604 3212800 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC125453.6 1 180197 -
3212801 3359448 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC022257.20 1 146648 -
3359449 3436572 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC090141.9 78931 156054 +
3436573 3445743 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC242829.2 28735 37905 +
3445744 3480351 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC240838.2 1 34608 -
3480352 3524269 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC133633.5 50278 94195 +
3524270 3605124 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC104021.5 36059 116913 -
3605125 3605503 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 KF458663.1 1 379 +
3605504 3641182 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC104021.5 1 35679 -
3641183 3817510 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 78 AC246817.2 31510 207837 +
3817511 3867510 79 N 50000 contig no
3867511 3967522 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 AC105091.3 1 100012 +
3967523 4161357 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 AC245594.2 1 193835 -
4161358 4260613 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 AC245062.2 1 99256 -
4260614 4413299 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 AC244257.3 1 152686 -
4413300 4523241 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 AP005902.2 39636 149577 +
4523242 4573241 85 N 50000 contig no
4573242 4651162 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 AC022849.5 1 77921 +
4651163 4691256 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 AC196515.1 1 40094 +
4691257 4736802 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 AC022849.5 108966 154511 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
12
Gap types
type-3
12
Total clones
54
Clone HTGS Phases
finished
54
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
742,903
Total finished length of fin clones w/ overlap
5,021,059
Total finished length of fin clones w/o overlap
4,278,156
Total overlap length of fin+unfin clones
742,903
Total finished length of fin+unfin clones w/ overlap
5,021,059
Total finished length of fin+unfin clones w/o overlap
4,278,156

Dovetails

Help

# rank accession status length date
1 2 AC011198 unfinished 9 Sat, 16 Dec 2017 00:20
2 2 AC011198 unfinished 9 Sat, 16 Dec 2017 00:20
3 3 AC068570 unfinished 72,093 Sat, 16 Dec 2017 00:20
4 6 AF067845 unfinished 77,510 Sat, 16 Dec 2017 00:20
5 13 AC129915 unfinished 91,601 Sat, 16 Dec 2017 00:20
6 20 AC025674 unfinished 88,947 Sat, 16 Dec 2017 00:20
7 23 AF186192 unfinished 127,546 Sat, 16 Dec 2017 00:20
8 31 AC105219 unfinished 19,922 Sat, 16 Dec 2017 00:20
9 34 AC083982 unfinished 77,608 Sat, 16 Dec 2017 00:20
10 37 AC100797 unfinished 35,508 Sat, 16 Dec 2017 00:20
11 40 AC100803 unfinished 109,339 Sat, 16 Dec 2017 00:20
12 45 AC144407 unfinished 1,053 Sat, 16 Dec 2017 00:20
13 47 AC019257 unfinished 125,110 Sat, 16 Dec 2017 00:20
14 54 AC133633 unfinished 41,710 Sat, 16 Dec 2017 00:20
15 55 AC104021 unfinished 35,679 Sat, 16 Dec 2017 00:20

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