ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__2 (TPF updated: 2014-11-21)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-341N2
HSCHR2_2_CTG15
CONTAINER
bA341N2
AC093642.5
finished
2 ABC14-1064714G8
HSCHR2_2_CTG15
CONTAINED
f14A1064714G8
AC244167.1
finished
1 RP11-341N2
HSCHR2_2_CTG15
CONTAINER
bA341N2
AC093642.5
finished
  GAP (type-3) length unknown    
4 CTD-2007N20
HSCHR2_2_CTG7
bK2007N20
AC145029.2
finished
5 CH17-132F21
HSCHR2_2_CTG7
bMO132F21
AC233263.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 43207 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC093642.5 1 43207 +
43208 79212 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC244167.1 1 36005 -
79213 163218 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC093642.5 74198 158203 +
163219 213218 4 N 50000 contig no
213219 377583 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AC145029.2 1 164365 +
377584 427376 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AC233263.2 1 49793 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-341N2
HSCHR2_2_CTG15
CONTAINER
bA341N2
-
-
AC093642.5
finished
158203 RPCI-11.2 3' / 3'
43207 / 36005
84006 / -
36005
18.22
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
2 ABC14-1064714G8
HSCHR2_2_CTG15
CONTAINED
f14A1064714G8
-
-
AC244167.1
finished
36005 ABC14 5' / 5'
1 / 74198
- / 43207
36005
18.22
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
1 RP11-341N2
HSCHR2_2_CTG15
CONTAINER
bA341N2
-
-
AC093642.5
finished
158203 RPCI-11.2        
  GAP (type-3) length unknown                  
4 CTD-2007N20
HSCHR2_2_CTG7
bK2007N20
-
-
AC145029.2
finished
164365 CIT-HSP-D1 3' / 3'
164365 / 49793
- / -
122208
9.93
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
5 CH17-132F21
HSCHR2_2_CTG7
bMO132F21
-
-
AC233263.2
finished
173578 CHORI-17        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
153,066
Total finished length of fin clones w/ overlap
532,151
Total finished length of fin clones w/o overlap
379,085
Total overlap length of fin+unfin clones
153,066
Total finished length of fin+unfin clones w/ overlap
532,151
Total finished length of fin+unfin clones w/o overlap
379,085

Dovetails

# rank accession status length date
1 1 AC093642.5 unfinished 84,006 Fri, 21 Nov 2014 23:32

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